data_7NVP
#
_model_server_result.job_id            7hE3gnRNqavTAhwbY5XCzw 
_model_server_result.datetime_utc      '2024-11-16 11:53:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nvp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    7NVP 
#
_exptl.entry_id    7NVP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NVP 
_cell.length_a            66.096 
_cell.length_b            133.334 
_cell.length_c            158.912 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NVP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 53 AAA CYS 52 1_555 A SG CYS 58 AAA CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
disulf ? disulf2 B SG CYS 53 BBB CYS 52 1_555 B SG CYS 58 BBB CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 220 n n 
C1 C2 GOL sing 221 n n 
C1 H11 GOL sing 222 n n 
C1 H12 GOL sing 223 n n 
O1 HO1 GOL sing 224 n n 
C2 O2 GOL sing 225 n n 
C2 C3 GOL sing 226 n n 
C2 H2 GOL sing 227 n n 
O2 HO2 GOL sing 228 n n 
C3 O3 GOL sing 229 n n 
C3 H31 GOL sing 230 n n 
C3 H32 GOL sing 231 n n 
O3 HO3 GOL sing 232 n n 
#
_atom_sites.entry_id                     7NVP 
_atom_sites.fract_transf_matrix[1][1]    0.01513 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0075 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006293 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD AAA 1 501 1491 FAD FAD . 
D 3 UT2 AAA 1 502 1501 UT2 A17 . 
E 4 GOL AAA 1 503 1502 GOL GOL . 
F 5 SO4 AAA 1 504 3 SO4 SO4 . 
G 5 SO4 AAA 1 505 4 SO4 SO4 . 
H 5 SO4 AAA 1 506 6 SO4 SO4 . 
I 5 SO4 AAA 1 507 8 SO4 SO4 . 
J 2 FAD BBB 1 501 1491 FAD FAD . 
K 3 UT2 BBB 1 502 1501 UT2 A17 . 
L 5 SO4 BBB 1 503 1 SO4 SO4 . 
M 5 SO4 BBB 1 504 2 SO4 SO4 . 
N 5 SO4 BBB 1 505 7 SO4 SO4 . 
O 6 HOH AAA 1 601 11 HOH HOH . 
O 6 HOH AAA 2 602 136 HOH HOH . 
O 6 HOH AAA 3 603 144 HOH HOH . 
O 6 HOH AAA 4 604 122 HOH HOH . 
O 6 HOH AAA 5 605 184 HOH HOH . 
O 6 HOH AAA 6 606 185 HOH HOH . 
O 6 HOH AAA 7 607 26 HOH HOH . 
O 6 HOH AAA 8 608 193 HOH HOH . 
O 6 HOH AAA 9 609 35 HOH HOH . 
O 6 HOH AAA 10 610 160 HOH HOH . 
O 6 HOH AAA 11 611 97 HOH HOH . 
O 6 HOH AAA 12 612 15 HOH HOH . 
O 6 HOH AAA 13 613 8 HOH HOH . 
O 6 HOH AAA 14 614 37 HOH HOH . 
O 6 HOH AAA 15 615 148 HOH HOH . 
O 6 HOH AAA 16 616 176 HOH HOH . 
O 6 HOH AAA 17 617 209 HOH HOH . 
O 6 HOH AAA 18 618 194 HOH HOH . 
O 6 HOH AAA 19 619 91 HOH HOH . 
O 6 HOH AAA 20 620 30 HOH HOH . 
O 6 HOH AAA 21 621 25 HOH HOH . 
O 6 HOH AAA 22 622 94 HOH HOH . 
O 6 HOH AAA 23 623 125 HOH HOH . 
O 6 HOH AAA 24 624 4 HOH HOH . 
O 6 HOH AAA 25 625 92 HOH HOH . 
O 6 HOH AAA 26 626 21 HOH HOH . 
O 6 HOH AAA 27 627 5 HOH HOH . 
O 6 HOH AAA 28 628 22 HOH HOH . 
O 6 HOH AAA 29 629 12 HOH HOH . 
O 6 HOH AAA 30 630 113 HOH HOH . 
O 6 HOH AAA 31 631 210 HOH HOH . 
O 6 HOH AAA 32 632 88 HOH HOH . 
O 6 HOH AAA 33 633 68 HOH HOH . 
O 6 HOH AAA 34 634 89 HOH HOH . 
O 6 HOH AAA 35 635 7 HOH HOH . 
O 6 HOH AAA 36 636 137 HOH HOH . 
O 6 HOH AAA 37 637 140 HOH HOH . 
O 6 HOH AAA 38 638 24 HOH HOH . 
O 6 HOH AAA 39 639 105 HOH HOH . 
O 6 HOH AAA 40 640 2 HOH HOH . 
O 6 HOH AAA 41 641 90 HOH HOH . 
O 6 HOH AAA 42 642 27 HOH HOH . 
O 6 HOH AAA 43 643 126 HOH HOH . 
O 6 HOH AAA 44 644 182 HOH HOH . 
O 6 HOH AAA 45 645 47 HOH HOH . 
O 6 HOH AAA 46 646 93 HOH HOH . 
O 6 HOH AAA 47 647 55 HOH HOH . 
O 6 HOH AAA 48 648 13 HOH HOH . 
O 6 HOH AAA 49 649 69 HOH HOH . 
O 6 HOH AAA 50 650 17 HOH HOH . 
O 6 HOH AAA 51 651 45 HOH HOH . 
O 6 HOH AAA 52 652 128 HOH HOH . 
O 6 HOH AAA 53 653 146 HOH HOH . 
O 6 HOH AAA 54 654 131 HOH HOH . 
O 6 HOH AAA 55 655 10 HOH HOH . 
O 6 HOH AAA 56 656 16 HOH HOH . 
O 6 HOH AAA 57 657 180 HOH HOH . 
O 6 HOH AAA 58 658 40 HOH HOH . 
O 6 HOH AAA 59 659 101 HOH HOH . 
O 6 HOH AAA 60 660 179 HOH HOH . 
O 6 HOH AAA 61 661 74 HOH HOH . 
O 6 HOH AAA 62 662 155 HOH HOH . 
O 6 HOH AAA 63 663 87 HOH HOH . 
O 6 HOH AAA 64 664 130 HOH HOH . 
O 6 HOH AAA 65 665 49 HOH HOH . 
O 6 HOH AAA 66 666 202 HOH HOH . 
O 6 HOH AAA 67 667 42 HOH HOH . 
O 6 HOH AAA 68 668 48 HOH HOH . 
O 6 HOH AAA 69 669 141 HOH HOH . 
O 6 HOH AAA 70 670 56 HOH HOH . 
O 6 HOH AAA 71 671 150 HOH HOH . 
O 6 HOH AAA 72 672 20 HOH HOH . 
O 6 HOH AAA 73 673 86 HOH HOH . 
O 6 HOH AAA 74 674 177 HOH HOH . 
O 6 HOH AAA 75 675 96 HOH HOH . 
O 6 HOH AAA 76 676 178 HOH HOH . 
O 6 HOH AAA 77 677 158 HOH HOH . 
O 6 HOH AAA 78 678 191 HOH HOH . 
O 6 HOH AAA 79 679 134 HOH HOH . 
O 6 HOH AAA 80 680 159 HOH HOH . 
O 6 HOH AAA 81 681 196 HOH HOH . 
O 6 HOH AAA 82 682 123 HOH HOH . 
O 6 HOH AAA 83 683 189 HOH HOH . 
O 6 HOH AAA 84 684 73 HOH HOH . 
O 6 HOH AAA 85 685 129 HOH HOH . 
O 6 HOH AAA 86 686 70 HOH HOH . 
O 6 HOH AAA 87 687 142 HOH HOH . 
O 6 HOH AAA 88 688 197 HOH HOH . 
O 6 HOH AAA 89 689 139 HOH HOH . 
O 6 HOH AAA 90 690 147 HOH HOH . 
O 6 HOH AAA 91 691 206 HOH HOH . 
O 6 HOH AAA 92 692 127 HOH HOH . 
O 6 HOH AAA 93 693 195 HOH HOH . 
O 6 HOH AAA 94 694 112 HOH HOH . 
O 6 HOH AAA 95 695 132 HOH HOH . 
O 6 HOH AAA 96 696 198 HOH HOH . 
O 6 HOH AAA 97 697 119 HOH HOH . 
O 6 HOH AAA 98 698 102 HOH HOH . 
O 6 HOH AAA 99 699 187 HOH HOH . 
O 6 HOH AAA 100 700 135 HOH HOH . 
O 6 HOH AAA 101 701 117 HOH HOH . 
O 6 HOH AAA 102 702 156 HOH HOH . 
O 6 HOH AAA 103 703 211 HOH HOH . 
O 6 HOH AAA 104 704 100 HOH HOH . 
O 6 HOH AAA 105 705 181 HOH HOH . 
O 6 HOH AAA 106 706 84 HOH HOH . 
O 6 HOH AAA 107 707 58 HOH HOH . 
O 6 HOH AAA 108 708 157 HOH HOH . 
O 6 HOH AAA 109 709 133 HOH HOH . 
O 6 HOH AAA 110 710 95 HOH HOH . 
P 6 HOH BBB 1 602 50 HOH HOH . 
P 6 HOH BBB 2 603 201 HOH HOH . 
P 6 HOH BBB 3 604 81 HOH HOH . 
P 6 HOH BBB 4 605 108 HOH HOH . 
P 6 HOH BBB 5 606 171 HOH HOH . 
P 6 HOH BBB 6 607 1 HOH HOH . 
P 6 HOH BBB 7 608 175 HOH HOH . 
P 6 HOH BBB 8 609 109 HOH HOH . 
P 6 HOH BBB 9 610 151 HOH HOH . 
P 6 HOH BBB 10 611 115 HOH HOH . 
P 6 HOH BBB 11 612 79 HOH HOH . 
P 6 HOH BBB 12 613 3 HOH HOH . 
P 6 HOH BBB 13 614 28 HOH HOH . 
P 6 HOH BBB 14 615 60 HOH HOH . 
P 6 HOH BBB 15 616 72 HOH HOH . 
P 6 HOH BBB 16 617 121 HOH HOH . 
P 6 HOH BBB 17 618 32 HOH HOH . 
P 6 HOH BBB 18 619 166 HOH HOH . 
P 6 HOH BBB 19 620 14 HOH HOH . 
P 6 HOH BBB 20 621 46 HOH HOH . 
P 6 HOH BBB 21 622 83 HOH HOH . 
P 6 HOH BBB 22 623 78 HOH HOH . 
P 6 HOH BBB 23 624 44 HOH HOH . 
P 6 HOH BBB 24 625 31 HOH HOH . 
P 6 HOH BBB 25 626 163 HOH HOH . 
P 6 HOH BBB 26 627 6 HOH HOH . 
P 6 HOH BBB 27 628 19 HOH HOH . 
P 6 HOH BBB 28 629 124 HOH HOH . 
P 6 HOH BBB 29 630 52 HOH HOH . 
P 6 HOH BBB 30 631 104 HOH HOH . 
P 6 HOH BBB 31 632 116 HOH HOH . 
P 6 HOH BBB 32 633 61 HOH HOH . 
P 6 HOH BBB 33 634 33 HOH HOH . 
P 6 HOH BBB 34 635 173 HOH HOH . 
P 6 HOH BBB 35 636 75 HOH HOH . 
P 6 HOH BBB 36 637 200 HOH HOH . 
P 6 HOH BBB 37 638 152 HOH HOH . 
P 6 HOH BBB 38 639 98 HOH HOH . 
P 6 HOH BBB 39 640 41 HOH HOH . 
P 6 HOH BBB 40 641 174 HOH HOH . 
P 6 HOH BBB 41 642 168 HOH HOH . 
P 6 HOH BBB 42 643 149 HOH HOH . 
P 6 HOH BBB 43 644 205 HOH HOH . 
P 6 HOH BBB 44 645 107 HOH HOH . 
P 6 HOH BBB 45 646 99 HOH HOH . 
P 6 HOH BBB 46 647 57 HOH HOH . 
P 6 HOH BBB 47 648 114 HOH HOH . 
P 6 HOH BBB 48 649 23 HOH HOH . 
P 6 HOH BBB 49 650 162 HOH HOH . 
P 6 HOH BBB 50 651 64 HOH HOH . 
P 6 HOH BBB 51 652 106 HOH HOH . 
P 6 HOH BBB 52 653 188 HOH HOH . 
P 6 HOH BBB 53 654 143 HOH HOH . 
P 6 HOH BBB 54 655 172 HOH HOH . 
P 6 HOH BBB 55 656 164 HOH HOH . 
P 6 HOH BBB 56 657 71 HOH HOH . 
P 6 HOH BBB 57 658 76 HOH HOH . 
P 6 HOH BBB 58 659 145 HOH HOH . 
P 6 HOH BBB 59 660 66 HOH HOH . 
P 6 HOH BBB 60 661 170 HOH HOH . 
P 6 HOH BBB 61 662 82 HOH HOH . 
P 6 HOH BBB 62 663 199 HOH HOH . 
P 6 HOH BBB 63 664 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 6.054 -9.85 -20.435 1 72.25 0 C1 GOL 503 AAA 1 
HETATM 2 O O1 GOL . . . E 4 6.967 -10.015 -19.353 1 66.68 0 O1 GOL 503 AAA 1 
HETATM 3 C C2 GOL . . . E 4 5.315 -8.526 -20.363 1 69.44 0 C2 GOL 503 AAA 1 
HETATM 4 O O2 GOL . . . E 4 4.511 -8.357 -21.531 1 68.27 0 O2 GOL 503 AAA 1 
HETATM 5 C C3 GOL . . . E 4 4.446 -8.379 -19.132 1 67.19 0 C3 GOL 503 AAA 1 
HETATM 6 O O3 GOL . . . E 4 4.333 -7.013 -18.744 1 65.14 0 O3 GOL 503 AAA 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           598 
_model_server_stats.encode_time_ms          25 
_model_server_stats.element_count           6 
#