data_7NVQ # _model_server_result.job_id JVKmP7jR1QfQYglxaq8cog _model_server_result.datetime_utc '2025-02-17 19:30:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7NVQ # _exptl.entry_id 7NVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NVQ _cell.length_a 53.889 _cell.length_b 69.42 _cell.length_c 74.419 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 299 n n O4 C21 STU sing 300 n n C25 C24 STU sing 301 n n C25 N3 STU sing 302 n n C25 H25 STU sing 303 n n C24 C23 STU sing 304 n n C24 H241 STU sing 305 n n C24 H242 STU sing 306 n n C23 C22 STU sing 307 n n C23 N4 STU sing 308 n n C23 H23 STU sing 309 n n C22 C21 STU sing 310 n n C22 O6 STU sing 311 n n C22 H22 STU sing 312 n n C21 C26 STU sing 313 n n C21 N2 STU sing 314 n n C26 H261 STU sing 315 n n C26 H262 STU sing 316 n n C26 H263 STU sing 317 n n N2 C18 STU sing 318 n y N2 C17 STU sing 319 n y C18 C19 STU doub 320 n y C18 C11 STU sing 321 n y C19 C6 STU sing 322 n y C19 N3 STU sing 323 n y C6 C7 STU doub 324 n y C6 C5 STU sing 325 n y C7 C10 STU sing 326 n y C7 C8 STU sing 327 n n C10 C11 STU doub 328 n y C10 C9 STU sing 329 n n C11 C12 STU sing 330 n y C12 C17 STU doub 331 n y C12 C13 STU sing 332 n y C17 C16 STU sing 333 n y C16 C15 STU doub 334 n y C16 H16 STU sing 335 n n C15 C14 STU sing 336 n y C15 H15 STU sing 337 n n C14 C13 STU doub 338 n y C14 H14 STU sing 339 n n C13 H13 STU sing 340 n n C9 N1 STU sing 341 n n C9 H91 STU sing 342 n n C9 H92 STU sing 343 n n N1 C8 STU sing 344 n n N1 HN1 STU sing 345 n n C8 O5 STU doub 346 n n C5 C20 STU doub 347 n y C5 C4 STU sing 348 n y C20 C1 STU sing 349 n y C20 N3 STU sing 350 n y C1 C2 STU doub 351 n y C1 H1 STU sing 352 n n C2 C3 STU sing 353 n y C2 H2 STU sing 354 n n C3 C4 STU doub 355 n y C3 H3 STU sing 356 n n C4 H4 STU sing 357 n n O6 C27 STU sing 358 n n C27 H271 STU sing 359 n n C27 H272 STU sing 360 n n C27 H273 STU sing 361 n n N4 C28 STU sing 362 n n N4 HN4 STU sing 363 n n C28 H281 STU sing 364 n n C28 H282 STU sing 365 n n C28 H283 STU sing 366 n n # _atom_sites.entry_id 7NVQ _atom_sites.fract_transf_matrix[1][1] 0.018557 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014405 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STU A 1 301 301 STU STU . C 3 EDO A 1 302 302 EDO EDO . D 3 EDO A 1 303 303 EDO EDO . E 4 HOH A 1 401 39 HOH HOH . E 4 HOH A 2 402 58 HOH HOH . E 4 HOH A 3 403 8 HOH HOH . E 4 HOH A 4 404 63 HOH HOH . E 4 HOH A 5 405 19 HOH HOH . E 4 HOH A 6 406 23 HOH HOH . E 4 HOH A 7 407 10 HOH HOH . E 4 HOH A 8 408 24 HOH HOH . E 4 HOH A 9 409 14 HOH HOH . E 4 HOH A 10 410 3 HOH HOH . E 4 HOH A 11 411 17 HOH HOH . E 4 HOH A 12 412 56 HOH HOH . E 4 HOH A 13 413 37 HOH HOH . E 4 HOH A 14 414 61 HOH HOH . E 4 HOH A 15 415 49 HOH HOH . E 4 HOH A 16 416 20 HOH HOH . E 4 HOH A 17 417 6 HOH HOH . E 4 HOH A 18 418 4 HOH HOH . E 4 HOH A 19 419 57 HOH HOH . E 4 HOH A 20 420 62 HOH HOH . E 4 HOH A 21 421 2 HOH HOH . E 4 HOH A 22 422 47 HOH HOH . E 4 HOH A 23 423 32 HOH HOH . E 4 HOH A 24 424 1 HOH HOH . E 4 HOH A 25 425 16 HOH HOH . E 4 HOH A 26 426 34 HOH HOH . E 4 HOH A 27 427 22 HOH HOH . E 4 HOH A 28 428 21 HOH HOH . E 4 HOH A 29 429 9 HOH HOH . E 4 HOH A 30 430 50 HOH HOH . E 4 HOH A 31 431 5 HOH HOH . E 4 HOH A 32 432 60 HOH HOH . E 4 HOH A 33 433 42 HOH HOH . E 4 HOH A 34 434 40 HOH HOH . E 4 HOH A 35 435 11 HOH HOH . E 4 HOH A 36 436 30 HOH HOH . E 4 HOH A 37 437 35 HOH HOH . E 4 HOH A 38 438 15 HOH HOH . E 4 HOH A 39 439 41 HOH HOH . E 4 HOH A 40 440 53 HOH HOH . E 4 HOH A 41 441 45 HOH HOH . E 4 HOH A 42 442 65 HOH HOH . E 4 HOH A 43 443 59 HOH HOH . E 4 HOH A 44 444 52 HOH HOH . E 4 HOH A 45 445 46 HOH HOH . E 4 HOH A 46 446 51 HOH HOH . E 4 HOH A 47 447 31 HOH HOH . E 4 HOH A 48 448 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . B 2 -0.292 -10.435 28.092 1 26.92 ? O4 STU 301 A 1 HETATM 2 C C25 STU . . . B 2 -1.712 -10.406 28.252 1 28.14 ? C25 STU 301 A 1 HETATM 3 C C24 STU . . . B 2 -2.486 -10.727 27.004 1 28.83 ? C24 STU 301 A 1 HETATM 4 C C23 STU . . . B 2 -1.531 -11.088 25.883 1 27.41 ? C23 STU 301 A 1 HETATM 5 C C22 STU . . . B 2 -0.597 -9.908 25.698 1 27.08 ? C22 STU 301 A 1 HETATM 6 C C21 STU . . . B 2 0.329 -9.853 26.904 1 26.69 ? C21 STU 301 A 1 HETATM 7 C C26 STU . . . B 2 1.53 -10.76 26.672 1 25.5 ? C26 STU 301 A 1 HETATM 8 N N2 STU . . . B 2 0.716 -8.476 27.258 1 26.62 ? N2 STU 301 A 1 HETATM 9 C C18 STU . . . B 2 -0.045 -7.701 28.114 1 26.26 ? C18 STU 301 A 1 HETATM 10 C C19 STU . . . B 2 -1.245 -7.957 28.808 1 25.58 ? C19 STU 301 A 1 HETATM 11 C C6 STU . . . B 2 -1.836 -6.946 29.594 1 25.62 ? C6 STU 301 A 1 HETATM 12 C C7 STU . . . B 2 -1.211 -5.681 29.699 1 24.46 ? C7 STU 301 A 1 HETATM 13 C C10 STU . . . B 2 -0.015 -5.438 29.037 1 24.44 ? C10 STU 301 A 1 HETATM 14 C C11 STU . . . B 2 0.557 -6.432 28.22 1 25.58 ? C11 STU 301 A 1 HETATM 15 C C12 STU . . . B 2 1.733 -6.445 27.402 1 24.8 ? C12 STU 301 A 1 HETATM 16 C C17 STU . . . B 2 1.795 -7.715 26.806 1 26.21 ? C17 STU 301 A 1 HETATM 17 C C16 STU . . . B 2 2.828 -8.04 25.923 1 27.45 ? C16 STU 301 A 1 HETATM 18 C C15 STU . . . B 2 3.774 -7.076 25.641 1 28.14 ? C15 STU 301 A 1 HETATM 19 C C14 STU . . . B 2 3.721 -5.809 26.224 1 28.49 ? C14 STU 301 A 1 HETATM 20 C C13 STU . . . B 2 2.705 -5.484 27.097 1 26.79 ? C13 STU 301 A 1 HETATM 21 C C9 STU . . . B 2 0.428 -4.031 29.301 1 23.82 ? C9 STU 301 A 1 HETATM 22 N N1 STU . . . B 2 -0.673 -3.524 30.096 1 24.7 ? N1 STU 301 A 1 HETATM 23 C C8 STU . . . B 2 -1.572 -4.468 30.445 1 24.28 ? C8 STU 301 A 1 HETATM 24 O O5 STU . . . B 2 -2.509 -4.3 31.194 1 25.95 ? O5 STU 301 A 1 HETATM 25 C C5 STU . . . B 2 -3.041 -7.507 30.158 1 25.65 ? C5 STU 301 A 1 HETATM 26 C C20 STU . . . B 2 -3.131 -8.833 29.689 1 25.58 ? C20 STU 301 A 1 HETATM 27 C C1 STU . . . B 2 -4.186 -9.662 30.051 1 26.43 ? C1 STU 301 A 1 HETATM 28 C C2 STU . . . B 2 -5.151 -9.143 30.887 1 27.39 ? C2 STU 301 A 1 HETATM 29 C C3 STU . . . B 2 -5.081 -7.834 31.363 1 26.1 ? C3 STU 301 A 1 HETATM 30 C C4 STU . . . B 2 -4.045 -7.006 30.997 1 25.98 ? C4 STU 301 A 1 HETATM 31 N N3 STU . . . B 2 -2.039 -9.095 28.861 1 26.77 ? N3 STU 301 A 1 HETATM 32 O O6 STU . . . B 2 -1.408 -8.744 25.604 1 24.73 ? O6 STU 301 A 1 HETATM 33 C C27 STU . . . B 2 -0.911 -7.734 24.716 1 26.32 ? C27 STU 301 A 1 HETATM 34 N N4 STU . . . B 2 -2.183 -11.476 24.637 1 29.27 ? N4 STU 301 A 1 HETATM 35 C C28 STU . . . B 2 -2.145 -12.885 24.312 1 30.36 ? C28 STU 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #