data_7NW1
#
_model_server_result.job_id            bOteWF7obi5hSlmrxyYAww 
_model_server_result.datetime_utc      '2024-11-04 23:49:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nw1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":209}' 
#
_entry.id    7NW1 
#
_exptl.entry_id    7NW1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NW1 
_cell.length_a            47.204 
_cell.length_b            67.421 
_cell.length_c            133.984 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NW1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,X,AA 1 1 
B,C,V,W,Y,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 M N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     7NW1 
_atom_sites.fract_transf_matrix[1][1]    0.021185 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014832 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007464 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 EDO AAA 1 201 201 EDO EDO . 
F 3 EDO AAA 1 202 301 EDO EDO . 
G 4 PEG AAA 1 203 401 PEG PEG . 
H 3 EDO AAA 1 204 801 EDO EDO . 
I 4 PEG AAA 1 205 901 PEG PEG . 
J 5 PGE AAA 1 206 1101 PGE PGE . 
K 3 EDO AAA 1 207 1201 EDO EDO . 
L 3 EDO AAA 1 208 1301 EDO EDO . 
M 6 GOL AAA 1 209 1701 GOL GOL . 
N 6 GOL AAA 1 210 1801 GOL GOL . 
O 6 GOL AAA 1 211 1901 GOL GOL . 
P 6 GOL AAA 1 212 2001 GOL GOL . 
Q 6 GOL AAA 1 213 2101 GOL GOL . 
R 3 EDO AAA 1 214 2201 EDO EDO . 
S 3 EDO AAA 1 215 2301 EDO EDO . 
T 3 EDO AAA 1 216 2401 EDO EDO . 
U 3 EDO AAA 1 217 2501 EDO EDO . 
V 3 EDO BBB 1 201 201 EDO EDO . 
W 3 EDO BBB 1 202 301 EDO EDO . 
X 7 HOH AAA 1 301 22 HOH HOH . 
X 7 HOH AAA 2 302 26 HOH HOH . 
X 7 HOH AAA 3 303 33 HOH HOH . 
X 7 HOH AAA 4 304 14 HOH HOH . 
X 7 HOH AAA 5 305 21 HOH HOH . 
X 7 HOH AAA 6 306 25 HOH HOH . 
X 7 HOH AAA 7 307 8 HOH HOH . 
X 7 HOH AAA 8 308 28 HOH HOH . 
X 7 HOH AAA 9 309 1 HOH HOH . 
X 7 HOH AAA 10 310 6 HOH HOH . 
X 7 HOH AAA 11 311 18 HOH HOH . 
X 7 HOH AAA 12 312 2 HOH HOH . 
X 7 HOH AAA 13 313 16 HOH HOH . 
X 7 HOH AAA 14 314 12 HOH HOH . 
X 7 HOH AAA 15 315 34 HOH HOH . 
X 7 HOH AAA 16 316 13 HOH HOH . 
X 7 HOH AAA 17 317 5 HOH HOH . 
X 7 HOH AAA 18 318 29 HOH HOH . 
X 7 HOH AAA 19 319 3 HOH HOH . 
X 7 HOH AAA 20 320 17 HOH HOH . 
X 7 HOH AAA 21 321 27 HOH HOH . 
X 7 HOH AAA 22 322 11 HOH HOH . 
X 7 HOH AAA 23 323 4 HOH HOH . 
X 7 HOH AAA 24 324 7 HOH HOH . 
X 7 HOH AAA 25 325 9 HOH HOH . 
X 7 HOH AAA 26 326 15 HOH HOH . 
X 7 HOH AAA 27 327 24 HOH HOH . 
X 7 HOH AAA 28 328 32 HOH HOH . 
X 7 HOH AAA 29 329 30 HOH HOH . 
X 7 HOH AAA 30 330 19 HOH HOH . 
X 7 HOH AAA 31 331 31 HOH HOH . 
X 7 HOH AAA 32 332 23 HOH HOH . 
Y 7 HOH BBB 1 301 35 HOH HOH . 
Y 7 HOH BBB 2 302 41 HOH HOH . 
Y 7 HOH BBB 3 303 37 HOH HOH . 
Y 7 HOH BBB 4 304 42 HOH HOH . 
Y 7 HOH BBB 5 305 40 HOH HOH . 
Y 7 HOH BBB 6 306 38 HOH HOH . 
Y 7 HOH BBB 7 307 46 HOH HOH . 
Y 7 HOH BBB 8 308 43 HOH HOH . 
Y 7 HOH BBB 9 309 51 HOH HOH . 
Y 7 HOH BBB 10 310 39 HOH HOH . 
Y 7 HOH BBB 11 311 44 HOH HOH . 
Y 7 HOH BBB 12 312 48 HOH HOH . 
Y 7 HOH BBB 13 313 52 HOH HOH . 
Y 7 HOH BBB 14 314 49 HOH HOH . 
Y 7 HOH BBB 15 315 36 HOH HOH . 
Z 7 HOH CCC 1 201 50 HOH HOH . 
Z 7 HOH CCC 2 202 47 HOH HOH . 
AA 7 HOH FFF 1 201 20 HOH HOH . 
AA 7 HOH FFF 2 202 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 6 5.36 21.529 25.634 1 58.31 ? C1 GOL 209 AAA 1 
HETATM 2 O O1 GOL . . . M 6 5.375 20.156 25.25 1 60.09 ? O1 GOL 209 AAA 1 
HETATM 3 C C2 GOL . . . M 6 4.744 21.726 27.005 1 57 ? C2 GOL 209 AAA 1 
HETATM 4 O O2 GOL . . . M 6 5.346 22.826 27.681 1 61.67 ? O2 GOL 209 AAA 1 
HETATM 5 C C3 GOL . . . M 6 3.25 21.934 26.974 1 53.32 ? C3 GOL 209 AAA 1 
HETATM 6 O O3 GOL . . . M 6 2.623 20.942 26.169 1 61.08 ? O3 GOL 209 AAA 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#