data_7NWE # _model_server_result.job_id 8e6tSzWh6ZEtZw5XpyPseQ _model_server_result.datetime_utc '2024-12-11 22:53:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nwe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7NWE # _exptl.entry_id 7NWE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.339 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[2,4-bis(oxidanylidene)-6-(trifluoromethyl)-1H-pyrimidin-3-yl]-5-methyl-2-(2-methylphenoxy)benzenecarbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NWE _cell.length_a 66.49 _cell.length_b 103.461 _cell.length_c 107.749 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NWE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 338 A CYS 335 1_555 A SG CYS 341 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 338 B CYS 335 1_555 B SG CYS 341 B CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A NZ LYS 225 A LYS 222 1_555 D C4A PLP . A PLP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 ? covale ? covale2 B NZ LYS 225 B LYS 222 1_555 F C4A PLP . B PLP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? metalc ? metalc1 B OD2 ASP 136 B ASP 133 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc2 G MG MG . B MG 403 1_555 I O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc3 G MG MG . B MG 403 1_555 I O HOH . B HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 G MG MG . B MG 403 1_555 I O HOH . B HOH 513 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? # _chem_comp.formula 'C20 H14 F3 N3 O3' _chem_comp.formula_weight 401.339 _chem_comp.id UTE _chem_comp.mon_nstd_flag . _chem_comp.name 4-[2,4-bis(oxidanylidene)-6-(trifluoromethyl)-1H-pyrimidin-3-yl]-5-methyl-2-(2-methylphenoxy)benzenecarbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-[2,4-bis(oxidanylidene)-6-(trifluoromethyl)-1~{H}-pyrimidin-3-yl]-5-methyl-2-(2-methylphenoxy)benzenecarbonitrile # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 UTE doub 384 n y C17 C16 UTE sing 385 n y C18 C13 UTE sing 386 n y O12 C13 UTE sing 387 n n O12 C11 UTE sing 388 n n C16 C15 UTE doub 389 n y C13 C14 UTE doub 390 n y O22 C21 UTE doub 391 n n N10 C9 UTE trip 392 n n C11 C20 UTE doub 393 n y C11 C8 UTE sing 394 n y C9 C8 UTE sing 395 n n C20 C4 UTE sing 396 n y C8 C7 UTE doub 397 n y C15 C14 UTE sing 398 n y C14 C19 UTE sing 399 n n C21 N23 UTE sing 400 n n C21 N3 UTE sing 401 n n N23 C24 UTE sing 402 n n C4 N3 UTE sing 403 n n C4 C5 UTE doub 404 n y C7 C5 UTE sing 405 n y N3 C2 UTE sing 406 n n C5 C6 UTE sing 407 n n F28 C25 UTE sing 408 n n F26 C25 UTE sing 409 n n C24 C25 UTE sing 410 n n C24 C29 UTE doub 411 n n C25 F27 UTE sing 412 n n C2 C29 UTE sing 413 n n C2 O1 UTE doub 414 n n C6 H1 UTE sing 415 n n C6 H2 UTE sing 416 n n C6 H3 UTE sing 417 n n C7 H4 UTE sing 418 n n C15 H5 UTE sing 419 n n C17 H6 UTE sing 420 n n C20 H7 UTE sing 421 n n C19 H8 UTE sing 422 n n C19 H9 UTE sing 423 n n C19 H10 UTE sing 424 n n C16 H11 UTE sing 425 n n C18 H12 UTE sing 426 n n C29 H13 UTE sing 427 n n N23 H14 UTE sing 428 n n # _atom_sites.entry_id 7NWE _atom_sites.fract_transf_matrix[1][1] 0.01504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009665 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UTE A 1 401 401 UTE LIG . D 3 PLP A 1 402 420 PLP PLP . E 2 UTE B 1 401 401 UTE LIG . F 3 PLP B 1 402 420 PLP PLP . G 4 MG B 1 403 430 MG MG . H 5 HOH A 1 501 21 HOH HOH . H 5 HOH A 2 502 45 HOH HOH . H 5 HOH A 3 503 20 HOH HOH . H 5 HOH A 4 504 63 HOH HOH . H 5 HOH A 5 505 44 HOH HOH . H 5 HOH A 6 506 4 HOH HOH . H 5 HOH A 7 507 65 HOH HOH . H 5 HOH A 8 508 41 HOH HOH . H 5 HOH A 9 509 31 HOH HOH . H 5 HOH A 10 510 29 HOH HOH . H 5 HOH A 11 511 12 HOH HOH . H 5 HOH A 12 512 6 HOH HOH . H 5 HOH A 13 513 38 HOH HOH . H 5 HOH A 14 514 25 HOH HOH . H 5 HOH A 15 515 54 HOH HOH . H 5 HOH A 16 516 39 HOH HOH . H 5 HOH A 17 517 2 HOH HOH . H 5 HOH A 18 518 15 HOH HOH . H 5 HOH A 19 519 47 HOH HOH . H 5 HOH A 20 520 48 HOH HOH . H 5 HOH A 21 521 5 HOH HOH . H 5 HOH A 22 522 43 HOH HOH . H 5 HOH A 23 523 30 HOH HOH . H 5 HOH A 24 524 23 HOH HOH . H 5 HOH A 25 525 32 HOH HOH . H 5 HOH A 26 526 33 HOH HOH . H 5 HOH A 27 527 1 HOH HOH . H 5 HOH A 28 528 24 HOH HOH . H 5 HOH A 29 529 60 HOH HOH . H 5 HOH A 30 530 40 HOH HOH . H 5 HOH A 31 531 62 HOH HOH . H 5 HOH A 32 532 58 HOH HOH . H 5 HOH A 33 533 14 HOH HOH . I 5 HOH B 1 501 61 HOH HOH . I 5 HOH B 2 502 22 HOH HOH . I 5 HOH B 3 503 53 HOH HOH . I 5 HOH B 4 504 35 HOH HOH . I 5 HOH B 5 505 51 HOH HOH . I 5 HOH B 6 506 37 HOH HOH . I 5 HOH B 7 507 57 HOH HOH . I 5 HOH B 8 508 27 HOH HOH . I 5 HOH B 9 509 46 HOH HOH . I 5 HOH B 10 510 66 HOH HOH . I 5 HOH B 11 511 49 HOH HOH . I 5 HOH B 12 512 9 HOH HOH . I 5 HOH B 13 513 67 HOH HOH . I 5 HOH B 14 514 64 HOH HOH . I 5 HOH B 15 515 55 HOH HOH . I 5 HOH B 16 516 17 HOH HOH . I 5 HOH B 17 517 28 HOH HOH . I 5 HOH B 18 518 19 HOH HOH . I 5 HOH B 19 519 42 HOH HOH . I 5 HOH B 20 520 13 HOH HOH . I 5 HOH B 21 521 10 HOH HOH . I 5 HOH B 22 522 7 HOH HOH . I 5 HOH B 23 523 26 HOH HOH . I 5 HOH B 24 524 16 HOH HOH . I 5 HOH B 25 525 52 HOH HOH . I 5 HOH B 26 526 11 HOH HOH . I 5 HOH B 27 527 18 HOH HOH . I 5 HOH B 28 528 59 HOH HOH . I 5 HOH B 29 529 36 HOH HOH . I 5 HOH B 30 530 3 HOH HOH . I 5 HOH B 31 531 56 HOH HOH . I 5 HOH B 32 532 8 HOH HOH . I 5 HOH B 33 533 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 UTE . . . C 2 -41.5 -1.647 -10.974 1 61.16 ? N3 UTE 401 A 1 HETATM 2 C C4 UTE . . . C 2 -41.395 -3 -11.323 1 60.84 ? C4 UTE 401 A 1 HETATM 3 C C5 UTE . . . C 2 -42.393 -3.893 -10.941 1 57.79 ? C5 UTE 401 A 1 HETATM 4 C C6 UTE . . . C 2 -43.601 -3.407 -10.131 1 55.38 ? C6 UTE 401 A 1 HETATM 5 C C7 UTE . . . C 2 -42.286 -5.235 -11.299 1 58.33 ? C7 UTE 401 A 1 HETATM 6 C C8 UTE . . . C 2 -41.19 -5.68 -12.036 1 59.73 ? C8 UTE 401 A 1 HETATM 7 C C13 UTE . . . C 2 -37.907 -4.666 -13.112 1 55.55 ? C13 UTE 401 A 1 HETATM 8 C C15 UTE . . . C 2 -35.91 -3.943 -11.959 1 56.69 ? C15 UTE 401 A 1 HETATM 9 C C17 UTE . . . C 2 -36.139 -3.531 -14.324 1 55.38 ? C17 UTE 401 A 1 HETATM 10 C C20 UTE . . . C 2 -40.296 -3.443 -12.067 1 62.69 ? C20 UTE 401 A 1 HETATM 11 C C21 UTE . . . C 2 -42.201 -0.771 -11.819 1 57.56 ? C21 UTE 401 A 1 HETATM 12 C C24 UTE . . . C 2 -41.722 1.066 -10.309 1 67.66 ? C24 UTE 401 A 1 HETATM 13 C C19 UTE . . . C 2 -37.677 -5.119 -10.607 1 52.32 ? C19 UTE 401 A 1 HETATM 14 C C14 UTE . . . C 2 -37.156 -4.566 -11.934 1 53.53 ? C14 UTE 401 A 1 HETATM 15 C C16 UTE . . . C 2 -35.401 -3.425 -13.15 1 56.76 ? C16 UTE 401 A 1 HETATM 16 C C18 UTE . . . C 2 -37.385 -4.155 -14.301 1 57.27 ? C18 UTE 401 A 1 HETATM 17 O O12 UTE . . . C 2 -39.129 -5.28 -13.154 1 58.41 ? O12 UTE 401 A 1 HETATM 18 C C11 UTE . . . C 2 -40.185 -4.791 -12.424 1 62.68 ? C11 UTE 401 A 1 HETATM 19 C C9 UTE . . . C 2 -41.103 -7.061 -12.393 1 58.79 ? C9 UTE 401 A 1 HETATM 20 N N10 UTE . . . C 2 -41.028 -8.16 -12.679 1 61.81 ? N10 UTE 401 A 1 HETATM 21 C C2 UTE . . . C 2 -40.91 -1.158 -9.795 1 65.05 ? C2 UTE 401 A 1 HETATM 22 O O1 UTE . . . C 2 -40.294 -1.921 -9.049 1 65.7 ? O1 UTE 401 A 1 HETATM 23 C C29 UTE . . . C 2 -41.023 0.195 -9.468 1 67.55 ? C29 UTE 401 A 1 HETATM 24 C C25 UTE . . . C 2 -41.871 2.565 -9.996 1 70.36 ? C25 UTE 401 A 1 HETATM 25 F F27 UTE . . . C 2 -41.909 2.786 -8.679 1 84.1 ? F27 UTE 401 A 1 HETATM 26 F F28 UTE . . . C 2 -42.989 3.027 -10.554 1 64.97 ? F28 UTE 401 A 1 HETATM 27 F F26 UTE . . . C 2 -40.843 3.205 -10.532 1 64.64 ? F26 UTE 401 A 1 HETATM 28 N N23 UTE . . . C 2 -42.302 0.575 -11.481 1 60.23 ? N23 UTE 401 A 1 HETATM 29 O O22 UTE . . . C 2 -42.728 -1.169 -12.857 1 56.42 ? O22 UTE 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 66 _model_server_stats.query_time_ms 467 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #