data_7NWE # _model_server_result.job_id 5NXwyV66SZtyDoF0PsN3cQ _model_server_result.datetime_utc '2024-12-11 22:17:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nwe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7NWE # _exptl.entry_id 7NWE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.339 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[2,4-bis(oxidanylidene)-6-(trifluoromethyl)-1H-pyrimidin-3-yl]-5-methyl-2-(2-methylphenoxy)benzenecarbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NWE _cell.length_a 66.49 _cell.length_b 103.461 _cell.length_c 107.749 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NWE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 338 A CYS 335 1_555 A SG CYS 341 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 338 B CYS 335 1_555 B SG CYS 341 B CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A NZ LYS 225 A LYS 222 1_555 D C4A PLP . A PLP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 ? covale ? covale2 B NZ LYS 225 B LYS 222 1_555 F C4A PLP . B PLP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? metalc ? metalc1 B OD2 ASP 136 B ASP 133 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc2 G MG MG . B MG 403 1_555 I O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc3 G MG MG . B MG 403 1_555 I O HOH . B HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 G MG MG . B MG 403 1_555 I O HOH . B HOH 513 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? # _chem_comp.formula 'C20 H14 F3 N3 O3' _chem_comp.formula_weight 401.339 _chem_comp.id UTE _chem_comp.mon_nstd_flag . _chem_comp.name 4-[2,4-bis(oxidanylidene)-6-(trifluoromethyl)-1H-pyrimidin-3-yl]-5-methyl-2-(2-methylphenoxy)benzenecarbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-[2,4-bis(oxidanylidene)-6-(trifluoromethyl)-1~{H}-pyrimidin-3-yl]-5-methyl-2-(2-methylphenoxy)benzenecarbonitrile # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 UTE doub 384 n y C17 C16 UTE sing 385 n y C18 C13 UTE sing 386 n y O12 C13 UTE sing 387 n n O12 C11 UTE sing 388 n n C16 C15 UTE doub 389 n y C13 C14 UTE doub 390 n y O22 C21 UTE doub 391 n n N10 C9 UTE trip 392 n n C11 C20 UTE doub 393 n y C11 C8 UTE sing 394 n y C9 C8 UTE sing 395 n n C20 C4 UTE sing 396 n y C8 C7 UTE doub 397 n y C15 C14 UTE sing 398 n y C14 C19 UTE sing 399 n n C21 N23 UTE sing 400 n n C21 N3 UTE sing 401 n n N23 C24 UTE sing 402 n n C4 N3 UTE sing 403 n n C4 C5 UTE doub 404 n y C7 C5 UTE sing 405 n y N3 C2 UTE sing 406 n n C5 C6 UTE sing 407 n n F28 C25 UTE sing 408 n n F26 C25 UTE sing 409 n n C24 C25 UTE sing 410 n n C24 C29 UTE doub 411 n n C25 F27 UTE sing 412 n n C2 C29 UTE sing 413 n n C2 O1 UTE doub 414 n n C6 H1 UTE sing 415 n n C6 H2 UTE sing 416 n n C6 H3 UTE sing 417 n n C7 H4 UTE sing 418 n n C15 H5 UTE sing 419 n n C17 H6 UTE sing 420 n n C20 H7 UTE sing 421 n n C19 H8 UTE sing 422 n n C19 H9 UTE sing 423 n n C19 H10 UTE sing 424 n n C16 H11 UTE sing 425 n n C18 H12 UTE sing 426 n n C29 H13 UTE sing 427 n n N23 H14 UTE sing 428 n n # _atom_sites.entry_id 7NWE _atom_sites.fract_transf_matrix[1][1] 0.01504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009665 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UTE A 1 401 401 UTE LIG . D 3 PLP A 1 402 420 PLP PLP . E 2 UTE B 1 401 401 UTE LIG . F 3 PLP B 1 402 420 PLP PLP . G 4 MG B 1 403 430 MG MG . H 5 HOH A 1 501 21 HOH HOH . H 5 HOH A 2 502 45 HOH HOH . H 5 HOH A 3 503 20 HOH HOH . H 5 HOH A 4 504 63 HOH HOH . H 5 HOH A 5 505 44 HOH HOH . H 5 HOH A 6 506 4 HOH HOH . H 5 HOH A 7 507 65 HOH HOH . H 5 HOH A 8 508 41 HOH HOH . H 5 HOH A 9 509 31 HOH HOH . H 5 HOH A 10 510 29 HOH HOH . H 5 HOH A 11 511 12 HOH HOH . H 5 HOH A 12 512 6 HOH HOH . H 5 HOH A 13 513 38 HOH HOH . H 5 HOH A 14 514 25 HOH HOH . H 5 HOH A 15 515 54 HOH HOH . H 5 HOH A 16 516 39 HOH HOH . H 5 HOH A 17 517 2 HOH HOH . H 5 HOH A 18 518 15 HOH HOH . H 5 HOH A 19 519 47 HOH HOH . H 5 HOH A 20 520 48 HOH HOH . H 5 HOH A 21 521 5 HOH HOH . H 5 HOH A 22 522 43 HOH HOH . H 5 HOH A 23 523 30 HOH HOH . H 5 HOH A 24 524 23 HOH HOH . H 5 HOH A 25 525 32 HOH HOH . H 5 HOH A 26 526 33 HOH HOH . H 5 HOH A 27 527 1 HOH HOH . H 5 HOH A 28 528 24 HOH HOH . H 5 HOH A 29 529 60 HOH HOH . H 5 HOH A 30 530 40 HOH HOH . H 5 HOH A 31 531 62 HOH HOH . H 5 HOH A 32 532 58 HOH HOH . H 5 HOH A 33 533 14 HOH HOH . I 5 HOH B 1 501 61 HOH HOH . I 5 HOH B 2 502 22 HOH HOH . I 5 HOH B 3 503 53 HOH HOH . I 5 HOH B 4 504 35 HOH HOH . I 5 HOH B 5 505 51 HOH HOH . I 5 HOH B 6 506 37 HOH HOH . I 5 HOH B 7 507 57 HOH HOH . I 5 HOH B 8 508 27 HOH HOH . I 5 HOH B 9 509 46 HOH HOH . I 5 HOH B 10 510 66 HOH HOH . I 5 HOH B 11 511 49 HOH HOH . I 5 HOH B 12 512 9 HOH HOH . I 5 HOH B 13 513 67 HOH HOH . I 5 HOH B 14 514 64 HOH HOH . I 5 HOH B 15 515 55 HOH HOH . I 5 HOH B 16 516 17 HOH HOH . I 5 HOH B 17 517 28 HOH HOH . I 5 HOH B 18 518 19 HOH HOH . I 5 HOH B 19 519 42 HOH HOH . I 5 HOH B 20 520 13 HOH HOH . I 5 HOH B 21 521 10 HOH HOH . I 5 HOH B 22 522 7 HOH HOH . I 5 HOH B 23 523 26 HOH HOH . I 5 HOH B 24 524 16 HOH HOH . I 5 HOH B 25 525 52 HOH HOH . I 5 HOH B 26 526 11 HOH HOH . I 5 HOH B 27 527 18 HOH HOH . I 5 HOH B 28 528 59 HOH HOH . I 5 HOH B 29 529 36 HOH HOH . I 5 HOH B 30 530 3 HOH HOH . I 5 HOH B 31 531 56 HOH HOH . I 5 HOH B 32 532 8 HOH HOH . I 5 HOH B 33 533 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 UTE . . . E 2 -7.085 4.471 -8.216 1 81.6 ? N3 UTE 401 B 1 HETATM 2 C C4 UTE . . . E 2 -7.056 5.125 -6.98 1 78.28 ? C4 UTE 401 B 1 HETATM 3 C C5 UTE . . . E 2 -5.905 5.079 -6.188 1 78.75 ? C5 UTE 401 B 1 HETATM 4 C C6 UTE . . . E 2 -4.66 4.304 -6.645 1 73.63 ? C6 UTE 401 B 1 HETATM 5 C C7 UTE . . . E 2 -5.892 5.743 -4.963 1 82.83 ? C7 UTE 401 B 1 HETATM 6 C C8 UTE . . . E 2 -7.02 6.444 -4.539 1 83.7 ? C8 UTE 401 B 1 HETATM 7 C C13 UTE . . . E 2 -10.433 7.076 -5.438 1 67.2 ? C13 UTE 401 B 1 HETATM 8 C C15 UTE . . . E 2 -12.389 5.79 -5.985 1 70.15 ? C15 UTE 401 B 1 HETATM 9 C C17 UTE . . . E 2 -12.195 8.074 -6.737 1 75.03 ? C17 UTE 401 B 1 HETATM 10 C C20 UTE . . . E 2 -8.182 5.835 -6.557 1 75.34 ? C20 UTE 401 B 1 HETATM 11 C C21 UTE . . . E 2 -6.411 5.029 -9.313 1 86.55 ? C21 UTE 401 B 1 HETATM 12 C C24 UTE . . . E 2 -7.149 3.167 -10.691 1 90.87 ? C24 UTE 401 B 1 HETATM 13 C C19 UTE . . . E 2 -10.591 4.678 -4.614 1 69.36 ? C19 UTE 401 B 1 HETATM 14 C C14 UTE . . . E 2 -11.152 5.886 -5.363 1 65.86 ? C14 UTE 401 B 1 HETATM 15 C C16 UTE . . . E 2 -12.911 6.882 -6.671 1 76.61 ? C16 UTE 401 B 1 HETATM 16 C C18 UTE . . . E 2 -10.956 8.171 -6.116 1 72.97 ? C18 UTE 401 B 1 HETATM 17 O O12 UTE . . . E 2 -9.224 7.208 -4.837 1 71.84 ? O12 UTE 401 B 1 HETATM 18 C C11 UTE . . . E 2 -8.165 6.492 -5.326 1 77.65 ? C11 UTE 401 B 1 HETATM 19 C C9 UTE . . . E 2 -7.03 7.139 -3.286 1 80.86 ? C9 UTE 401 B 1 HETATM 20 N N10 UTE . . . E 2 -7.048 7.695 -2.29 1 78.4 ? N10 UTE 401 B 1 HETATM 21 C C2 UTE . . . E 2 -7.789 3.271 -8.372 1 74.42 ? C2 UTE 401 B 1 HETATM 22 O O1 UTE . . . E 2 -8.385 2.777 -7.421 1 68.63 ? O1 UTE 401 B 1 HETATM 23 C C29 UTE . . . E 2 -7.819 2.619 -9.599 1 80.68 ? C29 UTE 401 B 1 HETATM 24 C C25 UTE . . . E 2 -7.162 2.483 -12.065 1 98 ? C25 UTE 401 B 1 HETATM 25 F F27 UTE . . . E 2 -5.904 2.293 -12.462 1 93.84 ? F27 UTE 401 B 1 HETATM 26 F F28 UTE . . . E 2 -7.801 3.289 -12.912 1 98.18 ? F28 UTE 401 B 1 HETATM 27 F F26 UTE . . . E 2 -7.78 1.305 -12.028 1 103.46 ? F26 UTE 401 B 1 HETATM 28 N N23 UTE . . . E 2 -6.447 4.373 -10.541 1 87.02 ? N23 UTE 401 B 1 HETATM 29 O O22 UTE . . . E 2 -5.786 6.084 -9.209 1 84.81 ? O22 UTE 401 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 29 #