data_7NXA # _model_server_result.job_id ADFQnV2cmyl7lKWO6nMYDQ _model_server_result.datetime_utc '2024-10-12 05:20:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":701}' # _entry.id 7NXA # _exptl.entry_id 7NXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NXA _cell.length_a 54.168 _cell.length_b 120.405 _cell.length_c 211.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 148 H CYS 148 1_555 A SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 13 E CYS 336 1_555 C SG CYS 38 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 C SG CYS 56 E CYS 379 1_555 C SG CYS 109 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 C SG CYS 68 E CYS 391 1_555 C SG CYS 202 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 C SG CYS 157 E CYS 480 1_555 C SG CYS 165 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 D SG CYS 22 A CYS 22 1_555 D SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 D SG CYS 146 A CYS 146 1_555 D SG CYS 202 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 E SG CYS 23 B CYS 23 1_555 E SG CYS 89 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf12 E SG CYS 134 B CYS 134 1_555 E SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 C ND2 ASN 20 E ASN 343 1_555 L C1 NAG . E NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7NXA _atom_sites.fract_transf_matrix[1][1] 0.018461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 SO4 L 1 301 11 SO4 SO4 . G 6 SO4 L 1 302 12 SO4 SO4 . H 6 SO4 L 1 303 18 SO4 SO4 . I 6 SO4 L 1 304 19 SO4 SO4 . J 6 SO4 L 1 305 20 SO4 SO4 . K 7 GOL E 1 701 701 GOL GOL . L 8 NAG E 1 702 901 NAG NAG . M 9 PEG E 1 703 1001 PEG PEG . N 9 PEG E 1 704 301 PEG PEG . O 6 SO4 E 1 705 1 SO4 SO4 . P 6 SO4 E 1 706 2 SO4 SO4 . Q 6 SO4 E 1 707 13 SO4 SO4 . R 6 SO4 E 1 708 14 SO4 SO4 . S 7 GOL A 1 401 401 GOL GOL . T 6 SO4 A 1 402 8 SO4 SO4 . U 6 SO4 A 1 403 9 SO4 SO4 . V 6 SO4 A 1 404 15 SO4 SO4 . W 6 SO4 A 1 405 16 SO4 SO4 . X 6 SO4 A 1 406 21 SO4 SO4 . Y 6 SO4 A 1 407 22 SO4 SO4 . Z 6 SO4 B 1 301 3 SO4 SO4 . AA 6 SO4 B 1 302 7 SO4 SO4 . BA 6 SO4 B 1 303 10 SO4 SO4 . CA 6 SO4 B 1 304 17 SO4 SO4 . DA 10 HOH H 1 301 52 HOH HOH . DA 10 HOH H 2 302 3 HOH HOH . DA 10 HOH H 3 303 42 HOH HOH . DA 10 HOH H 4 304 44 HOH HOH . DA 10 HOH H 5 305 34 HOH HOH . DA 10 HOH H 6 306 29 HOH HOH . DA 10 HOH H 7 307 5 HOH HOH . DA 10 HOH H 8 308 46 HOH HOH . EA 10 HOH L 1 401 14 HOH HOH . EA 10 HOH L 2 402 12 HOH HOH . EA 10 HOH L 3 403 35 HOH HOH . EA 10 HOH L 4 404 22 HOH HOH . EA 10 HOH L 5 405 23 HOH HOH . EA 10 HOH L 6 406 8 HOH HOH . EA 10 HOH L 7 407 7 HOH HOH . EA 10 HOH L 8 408 27 HOH HOH . EA 10 HOH L 9 409 56 HOH HOH . EA 10 HOH L 10 410 16 HOH HOH . EA 10 HOH L 11 411 55 HOH HOH . EA 10 HOH L 12 412 30 HOH HOH . EA 10 HOH L 13 413 11 HOH HOH . EA 10 HOH L 14 414 54 HOH HOH . EA 10 HOH L 15 415 43 HOH HOH . FA 10 HOH E 1 801 33 HOH HOH . FA 10 HOH E 2 802 41 HOH HOH . FA 10 HOH E 3 803 1 HOH HOH . FA 10 HOH E 4 804 10 HOH HOH . FA 10 HOH E 5 805 36 HOH HOH . FA 10 HOH E 6 806 32 HOH HOH . FA 10 HOH E 7 807 4 HOH HOH . FA 10 HOH E 8 808 40 HOH HOH . FA 10 HOH E 9 809 37 HOH HOH . FA 10 HOH E 10 810 51 HOH HOH . FA 10 HOH E 11 811 38 HOH HOH . GA 10 HOH A 1 501 39 HOH HOH . GA 10 HOH A 2 502 48 HOH HOH . GA 10 HOH A 3 503 31 HOH HOH . GA 10 HOH A 4 504 20 HOH HOH . GA 10 HOH A 5 505 18 HOH HOH . GA 10 HOH A 6 506 13 HOH HOH . GA 10 HOH A 7 507 28 HOH HOH . GA 10 HOH A 8 508 57 HOH HOH . GA 10 HOH A 9 509 2 HOH HOH . GA 10 HOH A 10 510 49 HOH HOH . GA 10 HOH A 11 511 53 HOH HOH . HA 10 HOH B 1 401 25 HOH HOH . HA 10 HOH B 2 402 15 HOH HOH . HA 10 HOH B 3 403 47 HOH HOH . HA 10 HOH B 4 404 17 HOH HOH . HA 10 HOH B 5 405 50 HOH HOH . HA 10 HOH B 6 406 26 HOH HOH . HA 10 HOH B 7 407 9 HOH HOH . HA 10 HOH B 8 408 19 HOH HOH . HA 10 HOH B 9 409 6 HOH HOH . HA 10 HOH B 10 410 24 HOH HOH . HA 10 HOH B 11 411 21 HOH HOH . HA 10 HOH B 12 412 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 7 26.136 -29.682 -37.891 1 60.46 ? C1 GOL 701 E 1 HETATM 2 O O1 GOL . . . K 7 25.528 -28.969 -38.92 1 68.33 ? O1 GOL 701 E 1 HETATM 3 C C2 GOL . . . K 7 25.632 -29.078 -36.561 1 77.01 ? C2 GOL 701 E 1 HETATM 4 O O2 GOL . . . K 7 26.224 -27.855 -36.276 1 79.33 ? O2 GOL 701 E 1 HETATM 5 C C3 GOL . . . K 7 25.952 -30.149 -35.497 1 77.64 ? C3 GOL 701 E 1 HETATM 6 O O3 GOL . . . K 7 24.765 -30.371 -34.799 1 84.49 ? O3 GOL 701 E 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #