data_7NXJ # _model_server_result.job_id uvz5oKh-ROTp8s680lzQAQ _model_server_result.datetime_utc '2024-11-27 03:20:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nxj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2000}' # _entry.id 7NXJ # _exptl.entry_id 7NXJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 560.09 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[4-[(3R)-3-[[5-chloranyl-4-(1H-indol-3-yl)pyrimidin-2-yl]amino]piperidin-1-yl]carbonylphenyl]-4-(dimethylamino)butanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.61 _cell.angle_gamma 90 _cell.entry_id 7NXJ _cell.length_a 49.88 _cell.length_b 149.45 _cell.length_c 92.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 178 A TYR 870 1_555 A N TPO 179 A TPO 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C TPO 179 A TPO 871 1_555 A N ASN 180 A ASN 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C C TYR 178 C TYR 870 1_555 C N TPO 179 C TPO 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C TPO 179 C TPO 871 1_555 C N ASN 180 C ASN 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C30 H34 Cl N7 O2' _chem_comp.formula_weight 560.09 _chem_comp.id 5I1 _chem_comp.mon_nstd_flag . _chem_comp.name N-[4-[(3R)-3-[[5-chloranyl-4-(1H-indol-3-yl)pyrimidin-2-yl]amino]piperidin-1-yl]carbonylphenyl]-4-(dimethylamino)butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 5I1 doub 1 n y N1 C6 5I1 sing 2 n y C2 N3 5I1 sing 3 n y C2 NBB 5I1 sing 4 n n N3 C4 5I1 doub 5 n y C4 C5 5I1 sing 6 n y C4 CAI 5I1 sing 7 n n C5 CL5 5I1 sing 8 n n C5 C6 5I1 doub 9 n y CAB NAD 5I1 sing 10 n n CAB CBH 5I1 sing 11 n n NAD CAH 5I1 sing 12 n n NAD CBG 5I1 sing 13 n n OAE CAH 5I1 doub 14 n n CAG NAR 5I1 sing 15 n n CAH CAM 5I1 sing 16 n n CAI CAV 5I1 sing 17 n y CAI CBE 5I1 doub 18 n y CAJ CAK 5I1 doub 19 n y CAJ CAO 5I1 sing 20 n y CAJ NBI 5I1 sing 21 n n CAK CAL 5I1 sing 22 n y CAL CAM 5I1 doub 23 n y CAM CAN 5I1 sing 24 n y CAN CAO 5I1 doub 25 n y CAP OAU 5I1 doub 26 n n CAP NBI 5I1 sing 27 n n CAP CBJ 5I1 sing 28 n n NAR CBM 5I1 sing 29 n n NAR CBN 5I1 sing 30 n n CAT CBA 5I1 sing 31 n n CAT CBH 5I1 sing 32 n n CAV CAW 5I1 doub 33 n y CAV CBD 5I1 sing 34 n y CAW CAX 5I1 sing 35 n y CAW NBK 5I1 sing 36 n y CAX CAY 5I1 doub 37 n y CAY CAZ 5I1 sing 38 n y CAZ CBD 5I1 doub 39 n y CBA CBG 5I1 sing 40 n n NBB CBH 5I1 sing 41 n n CBE NBK 5I1 sing 42 n y CBJ CBL 5I1 sing 43 n n CBL CBM 5I1 sing 44 n n C6 H6 5I1 sing 45 n n CAB HAB 5I1 sing 46 n n CAB HABA 5I1 sing 47 n n CAG HAG 5I1 sing 48 n n CAG HAGA 5I1 sing 49 n n CAG HAGB 5I1 sing 50 n n CAK HAK 5I1 sing 51 n n CAL HAL 5I1 sing 52 n n CAN HAN 5I1 sing 53 n n CAO HAO 5I1 sing 54 n n CAT HAT 5I1 sing 55 n n CAT HATA 5I1 sing 56 n n CAX HAX 5I1 sing 57 n n CAY HAY 5I1 sing 58 n n CAZ HAZ 5I1 sing 59 n n CBA HBA 5I1 sing 60 n n CBA HBAA 5I1 sing 61 n n NBB HNBB 5I1 sing 62 n n CBD HBD 5I1 sing 63 n n CBE HBE 5I1 sing 64 n n CBG HBG 5I1 sing 65 n n CBG HBGA 5I1 sing 66 n n CBH HBH 5I1 sing 67 n n NBI HNBI 5I1 sing 68 n n CBJ HBJ 5I1 sing 69 n n CBJ HBJA 5I1 sing 70 n n NBK HNBK 5I1 sing 71 n n CBL HBL 5I1 sing 72 n n CBL HBLA 5I1 sing 73 n n CBM HBM 5I1 sing 74 n n CBM HBMA 5I1 sing 75 n n CBN HBN 5I1 sing 76 n n CBN HBNA 5I1 sing 77 n n CBN HBNB 5I1 sing 78 n n # _atom_sites.entry_id 7NXJ _atom_sites.fract_transf_matrix[1][1] 0.020048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001618 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5I1 A 1 2000 2000 5I1 5I1 . F 3 5I1 C 1 2000 2000 5I1 5I1 . G 4 HOH A 1 2101 47 HOH HOH . G 4 HOH A 2 2102 46 HOH HOH . G 4 HOH A 3 2103 89 HOH HOH . G 4 HOH A 4 2104 74 HOH HOH . G 4 HOH A 5 2105 29 HOH HOH . G 4 HOH A 6 2106 2 HOH HOH . G 4 HOH A 7 2107 49 HOH HOH . G 4 HOH A 8 2108 73 HOH HOH . G 4 HOH A 9 2109 19 HOH HOH . G 4 HOH A 10 2110 1 HOH HOH . G 4 HOH A 11 2111 35 HOH HOH . G 4 HOH A 12 2112 61 HOH HOH . G 4 HOH A 13 2113 92 HOH HOH . G 4 HOH A 14 2114 39 HOH HOH . G 4 HOH A 15 2115 62 HOH HOH . G 4 HOH A 16 2116 90 HOH HOH . H 4 HOH B 1 301 5 HOH HOH . H 4 HOH B 2 302 9 HOH HOH . H 4 HOH B 3 303 52 HOH HOH . H 4 HOH B 4 304 43 HOH HOH . H 4 HOH B 5 305 6 HOH HOH . H 4 HOH B 6 306 69 HOH HOH . H 4 HOH B 7 307 22 HOH HOH . H 4 HOH B 8 308 44 HOH HOH . H 4 HOH B 9 309 17 HOH HOH . H 4 HOH B 10 310 59 HOH HOH . H 4 HOH B 11 311 10 HOH HOH . H 4 HOH B 12 312 77 HOH HOH . H 4 HOH B 13 313 67 HOH HOH . H 4 HOH B 14 314 65 HOH HOH . H 4 HOH B 15 315 66 HOH HOH . H 4 HOH B 16 316 70 HOH HOH . H 4 HOH B 17 317 72 HOH HOH . I 4 HOH C 1 2101 94 HOH HOH . I 4 HOH C 2 2102 14 HOH HOH . I 4 HOH C 3 2103 26 HOH HOH . I 4 HOH C 4 2104 40 HOH HOH . I 4 HOH C 5 2105 25 HOH HOH . I 4 HOH C 6 2106 18 HOH HOH . I 4 HOH C 7 2107 31 HOH HOH . I 4 HOH C 8 2108 45 HOH HOH . I 4 HOH C 9 2109 96 HOH HOH . I 4 HOH C 10 2110 38 HOH HOH . I 4 HOH C 11 2111 33 HOH HOH . I 4 HOH C 12 2112 3 HOH HOH . I 4 HOH C 13 2113 7 HOH HOH . I 4 HOH C 14 2114 32 HOH HOH . I 4 HOH C 15 2115 21 HOH HOH . I 4 HOH C 16 2116 95 HOH HOH . I 4 HOH C 17 2117 8 HOH HOH . I 4 HOH C 18 2118 41 HOH HOH . I 4 HOH C 19 2119 91 HOH HOH . I 4 HOH C 20 2120 28 HOH HOH . I 4 HOH C 21 2121 56 HOH HOH . I 4 HOH C 22 2122 63 HOH HOH . I 4 HOH C 23 2123 64 HOH HOH . I 4 HOH C 24 2124 78 HOH HOH . I 4 HOH C 25 2125 85 HOH HOH . J 4 HOH D 1 301 13 HOH HOH . J 4 HOH D 2 302 34 HOH HOH . J 4 HOH D 3 303 51 HOH HOH . J 4 HOH D 4 304 16 HOH HOH . J 4 HOH D 5 305 30 HOH HOH . J 4 HOH D 6 306 86 HOH HOH . J 4 HOH D 7 307 15 HOH HOH . J 4 HOH D 8 308 24 HOH HOH . J 4 HOH D 9 309 48 HOH HOH . J 4 HOH D 10 310 42 HOH HOH . J 4 HOH D 11 311 88 HOH HOH . J 4 HOH D 12 312 27 HOH HOH . J 4 HOH D 13 313 11 HOH HOH . J 4 HOH D 14 314 54 HOH HOH . J 4 HOH D 15 315 55 HOH HOH . J 4 HOH D 16 316 12 HOH HOH . J 4 HOH D 17 317 93 HOH HOH . J 4 HOH D 18 318 53 HOH HOH . J 4 HOH D 19 319 76 HOH HOH . J 4 HOH D 20 320 75 HOH HOH . J 4 HOH D 21 321 23 HOH HOH . J 4 HOH D 22 322 50 HOH HOH . J 4 HOH D 23 323 87 HOH HOH . J 4 HOH D 24 324 84 HOH HOH . J 4 HOH D 25 325 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 5I1 . . . F 3 23.633 -2.474 4.321 1 54.88 ? N1 5I1 2000 C 1 HETATM 2 C C2 5I1 . . . F 3 22.984 -3.17 5.232 1 54.78 ? C2 5I1 2000 C 1 HETATM 3 N N3 5I1 . . . F 3 22.304 -2.565 6.186 1 57.87 ? N3 5I1 2000 C 1 HETATM 4 C C4 5I1 . . . F 3 22.231 -1.248 6.281 1 57.87 ? C4 5I1 2000 C 1 HETATM 5 C C5 5I1 . . . F 3 22.905 -0.48 5.332 1 50.91 ? C5 5I1 2000 C 1 HETATM 6 CL CL5 5I1 . . . F 3 22.897 1.304 5.333 1 59.72 ? CL5 5I1 2000 C 1 HETATM 7 C C6 5I1 . . . F 3 23.612 -1.151 4.344 1 53.63 ? C6 5I1 2000 C 1 HETATM 8 C CAB 5I1 . . . F 3 22.879 -6.884 6.236 1 69.59 ? CAB 5I1 2000 C 1 HETATM 9 N NAD 5I1 . . . F 3 22.658 -7.627 7.529 1 74.11 ? NAD 5I1 2000 C 1 HETATM 10 O OAE 5I1 . . . F 3 21.648 -9.224 8.822 1 84.26 ? OAE 5I1 2000 C 1 HETATM 11 C CAG 5I1 . . . F 3 17.794 -13.814 -2.57 1 87.82 ? CAG 5I1 2000 C 1 HETATM 12 C CAH 5I1 . . . F 3 21.707 -8.715 7.755 1 76.16 ? CAH 5I1 2000 C 1 HETATM 13 C CAI 5I1 . . . F 3 21.41 -0.654 7.426 1 56.92 ? CAI 5I1 2000 C 1 HETATM 14 C CAJ 5I1 . . . F 3 19.109 -10.231 4.607 1 85.71 ? CAJ 5I1 2000 C 1 HETATM 15 C CAK 5I1 . . . F 3 20.46 -10.01 4.383 1 81.73 ? CAK 5I1 2000 C 1 HETATM 16 C CAL 5I1 . . . F 3 21.29 -9.522 5.385 1 80.11 ? CAL 5I1 2000 C 1 HETATM 17 C CAM 5I1 . . . F 3 20.78 -9.243 6.644 1 78.26 ? CAM 5I1 2000 C 1 HETATM 18 C CAN 5I1 . . . F 3 19.43 -9.474 6.888 1 83.22 ? CAN 5I1 2000 C 1 HETATM 19 C CAO 5I1 . . . F 3 18.602 -9.965 5.874 1 82.04 ? CAO 5I1 2000 C 1 HETATM 20 C CAP 5I1 . . . F 3 18.738 -11.128 2.247 1 93.89 ? CAP 5I1 2000 C 1 HETATM 21 N NAR 5I1 . . . F 3 18.306 -13.323 -1.3 1 101.13 ? NAR 5I1 2000 C 1 HETATM 22 C CAT 5I1 . . . F 3 23.658 -4.872 7.497 1 59.93 ? CAT 5I1 2000 C 1 HETATM 23 O OAU 5I1 . . . F 3 19.9 -11.062 2.03 1 92.77 ? OAU 5I1 2000 C 1 HETATM 24 C CAV 5I1 . . . F 3 20.38 -1.32 8.156 1 58.75 ? CAV 5I1 2000 C 1 HETATM 25 C CAW 5I1 . . . F 3 19.904 -0.437 9.089 1 62.13 ? CAW 5I1 2000 C 1 HETATM 26 C CAX 5I1 . . . F 3 18.859 -0.827 9.972 1 64.01 ? CAX 5I1 2000 C 1 HETATM 27 C CAY 5I1 . . . F 3 18.32 -2.104 9.892 1 65.69 ? CAY 5I1 2000 C 1 HETATM 28 C CAZ 5I1 . . . F 3 18.806 -3.006 8.941 1 69.58 ? CAZ 5I1 2000 C 1 HETATM 29 C CBA 5I1 . . . F 3 23.459 -5.583 8.775 1 64.85 ? CBA 5I1 2000 C 1 HETATM 30 N NBB 5I1 . . . F 3 23.01 -4.626 5.199 1 59.36 ? NBB 5I1 2000 C 1 HETATM 31 C CBD 5I1 . . . F 3 19.83 -2.624 8.077 1 67.34 ? CBD 5I1 2000 C 1 HETATM 32 C CBE 5I1 . . . F 3 21.485 0.618 7.987 1 63.32 ? CBE 5I1 2000 C 1 HETATM 33 C CBG 5I1 . . . F 3 23.595 -7.102 8.589 1 65.83 ? CBG 5I1 2000 C 1 HETATM 34 C CBH 5I1 . . . F 3 22.722 -5.368 6.453 1 63.58 ? CBH 5I1 2000 C 1 HETATM 35 N NBI 5I1 . . . F 3 18.218 -10.754 3.564 1 91.87 ? NBI 5I1 2000 C 1 HETATM 36 C CBJ 5I1 . . . F 3 17.833 -11.763 1.186 1 95 ? CBJ 5I1 2000 C 1 HETATM 37 N NBK 5I1 . . . F 3 20.593 0.726 8.957 1 65.92 ? NBK 5I1 2000 C 1 HETATM 38 C CBL 5I1 . . . F 3 17.97 -13.295 1.172 1 99 ? CBL 5I1 2000 C 1 HETATM 39 C CBM 5I1 . . . F 3 17.577 -13.904 -0.158 1 100.91 ? CBM 5I1 2000 C 1 HETATM 40 C CBN 5I1 . . . F 3 19.744 -13.53 -1.164 1 96.81 ? CBN 5I1 2000 C 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 40 #