data_7NXK # _model_server_result.job_id pgxPHN3FfkPtUiGxr8PM-w _model_server_result.datetime_utc '2025-01-08 07:19:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2000}' # _entry.id 7NXK # _exptl.entry_id 7NXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 545.075 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (E)-N-[4-[(1R,3R)-3-[[5-chloranyl-4-(1H-indol-3-yl)pyrimidin-2-yl]amino]cyclohexyl]oxyphenyl]-4-(dimethylamino)but-2-enamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 103.61 _cell.angle_beta 85.89 _cell.angle_gamma 102.56 _cell.entry_id 7NXK _cell.length_a 50.21 _cell.length_b 77.46 _cell.length_c 91.53 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 180 A TYR 892 1_555 A N TPO 181 A TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C TPO 181 A TPO 893 1_555 A N ASN 182 A ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A SG CYS 327 A CYS 1039 1_555 E C35 UUB . A UUB 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale4 C C TYR 180 C TYR 892 1_555 C N TPO 181 C TPO 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 C C TPO 181 C TPO 893 1_555 C N ASN 182 C ASN 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale6 C SG CYS 327 C CYS 1039 1_555 F C35 UUB . C UUB 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.738 ? # _chem_comp.formula 'C30 H33 Cl N6 O2' _chem_comp.formula_weight 545.075 _chem_comp.id UUB _chem_comp.mon_nstd_flag . _chem_comp.name (E)-N-[4-[(1R,3R)-3-[[5-chloranyl-4-(1H-indol-3-yl)pyrimidin-2-yl]amino]cyclohexyl]oxyphenyl]-4-(dimethylamino)but-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (~{E})-~{N}-[4-[(1~{R},3~{R})-3-[[5-chloranyl-4-(1~{H}-indol-3-yl)pyrimidin-2-yl]amino]cyclohexyl]oxyphenyl]-4-(dimethylamino)but-2-enamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 UUB doub 379 n y C3 C4 UUB sing 380 n y C2 C1 UUB sing 381 n y C38 N37 UUB sing 382 n n N7 C4 UUB sing 383 n y N7 C8 UUB sing 384 n y C4 C5 UUB doub 385 n y C1 C6 UUB doub 386 n y C8 C9 UUB doub 387 n y N37 C39 UUB sing 388 n n N37 C36 UUB sing 389 n n C5 C6 UUB sing 390 n y C5 C9 UUB sing 391 n y C9 C10 UUB sing 392 n n C36 C35 UUB sing 393 n n C33 C32 UUB sing 394 n n C33 C35 UUB doub 395 e n O34 C32 UUB doub 396 n n C22 C23 UUB sing 397 n n C22 C21 UUB sing 398 n n C32 N31 UUB sing 399 n n C23 C18 UUB sing 400 n n C21 C20 UUB sing 401 n n C26 C27 UUB doub 402 n y C26 C25 UUB sing 403 n y C27 C28 UUB sing 404 n y C10 N11 UUB doub 405 n y C10 C15 UUB sing 406 n y N11 C12 UUB sing 407 n y C18 N17 UUB sing 408 n n C18 C19 UUB sing 409 n n N31 C28 UUB sing 410 n n CL1 C15 UUB sing 411 n n C15 C14 UUB doub 412 n y C25 O24 UUB sing 413 n n C25 C30 UUB doub 414 n y C28 C29 UUB doub 415 n y C20 O24 UUB sing 416 n n C20 C19 UUB sing 417 n n C12 N17 UUB sing 418 n n C12 N13 UUB doub 419 n y C14 N13 UUB sing 420 n y C30 C29 UUB sing 421 n y C14 H1 UUB sing 422 n n C1 H2 UUB sing 423 n n C2 H5 UUB sing 424 n n C3 H3 UUB sing 425 n n C18 H4 UUB sing 426 n n C19 H6 UUB sing 427 n n C19 H7 UUB sing 428 n n C20 H8 UUB sing 429 n n C21 H9 UUB sing 430 n n C21 H10 UUB sing 431 n n C22 H11 UUB sing 432 n n C22 H12 UUB sing 433 n n C23 H13 UUB sing 434 n n C23 H14 UUB sing 435 n n C26 H15 UUB sing 436 n n C27 H16 UUB sing 437 n n C29 H17 UUB sing 438 n n C30 H18 UUB sing 439 n n C33 H19 UUB sing 440 n n C35 H21 UUB sing 441 n n C36 H23 UUB sing 442 n n C36 H24 UUB sing 443 n n C38 H25 UUB sing 444 n n C38 H26 UUB sing 445 n n C38 H27 UUB sing 446 n n C39 H28 UUB sing 447 n n C39 H29 UUB sing 448 n n C39 H30 UUB sing 449 n n C6 H33 UUB sing 450 n n C8 H31 UUB sing 451 n n N17 H32 UUB sing 452 n n N31 H34 UUB sing 453 n n N7 H39 UUB sing 454 n n # _atom_sites.entry_id 7NXK _atom_sites.fract_transf_matrix[1][1] 0.019916 _atom_sites.fract_transf_matrix[1][2] 0.004435 _atom_sites.fract_transf_matrix[1][3] -0.000443 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013226 _atom_sites.fract_transf_matrix[2][3] 0.003063 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 UUB A 1 2000 2000 UUB BSJ . F 3 UUB C 1 2000 2000 UUB BSJ . G 4 HOH A 1 2101 24 HOH HOH . G 4 HOH A 2 2102 2 HOH HOH . G 4 HOH A 3 2103 23 HOH HOH . G 4 HOH A 4 2104 54 HOH HOH . G 4 HOH A 5 2105 32 HOH HOH . G 4 HOH A 6 2106 19 HOH HOH . G 4 HOH A 7 2107 8 HOH HOH . G 4 HOH A 8 2108 59 HOH HOH . G 4 HOH A 9 2109 18 HOH HOH . G 4 HOH A 10 2110 16 HOH HOH . G 4 HOH A 11 2111 20 HOH HOH . G 4 HOH A 12 2112 26 HOH HOH . G 4 HOH A 13 2113 51 HOH HOH . G 4 HOH A 14 2114 55 HOH HOH . G 4 HOH A 15 2115 47 HOH HOH . H 4 HOH B 1 301 3 HOH HOH . H 4 HOH B 2 302 35 HOH HOH . H 4 HOH B 3 303 17 HOH HOH . H 4 HOH B 4 304 4 HOH HOH . H 4 HOH B 5 305 7 HOH HOH . H 4 HOH B 6 306 14 HOH HOH . H 4 HOH B 7 307 10 HOH HOH . H 4 HOH B 8 308 40 HOH HOH . H 4 HOH B 9 309 28 HOH HOH . H 4 HOH B 10 310 45 HOH HOH . H 4 HOH B 11 311 11 HOH HOH . H 4 HOH B 12 312 44 HOH HOH . H 4 HOH B 13 313 21 HOH HOH . H 4 HOH B 14 314 6 HOH HOH . H 4 HOH B 15 315 42 HOH HOH . I 4 HOH C 1 2101 25 HOH HOH . I 4 HOH C 2 2102 50 HOH HOH . I 4 HOH C 3 2103 37 HOH HOH . I 4 HOH C 4 2104 30 HOH HOH . I 4 HOH C 5 2105 49 HOH HOH . I 4 HOH C 6 2106 1 HOH HOH . I 4 HOH C 7 2107 27 HOH HOH . I 4 HOH C 8 2108 12 HOH HOH . I 4 HOH C 9 2109 48 HOH HOH . I 4 HOH C 10 2110 52 HOH HOH . I 4 HOH C 11 2111 61 HOH HOH . I 4 HOH C 12 2112 53 HOH HOH . J 4 HOH D 1 301 29 HOH HOH . J 4 HOH D 2 302 34 HOH HOH . J 4 HOH D 3 303 36 HOH HOH . J 4 HOH D 4 304 5 HOH HOH . J 4 HOH D 5 305 41 HOH HOH . J 4 HOH D 6 306 33 HOH HOH . J 4 HOH D 7 307 9 HOH HOH . J 4 HOH D 8 308 13 HOH HOH . J 4 HOH D 9 309 22 HOH HOH . J 4 HOH D 10 310 39 HOH HOH . J 4 HOH D 11 311 62 HOH HOH . J 4 HOH D 12 312 60 HOH HOH . J 4 HOH D 13 313 46 HOH HOH . J 4 HOH D 14 314 58 HOH HOH . J 4 HOH D 15 315 56 HOH HOH . J 4 HOH D 16 316 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O24 UUB . . . E 3 -18.929 1.469 27.579 1 92.58 ? O24 UUB 2000 A 1 HETATM 2 C C15 UUB . . . E 3 -17.571 -5.258 27.419 1 73.47 ? C15 UUB 2000 A 1 HETATM 3 C C14 UUB . . . E 3 -16.866 -4.925 28.52 1 66.64 ? C14 UUB 2000 A 1 HETATM 4 C C12 UUB . . . E 3 -16.41 -2.831 27.581 1 74.25 ? C12 UUB 2000 A 1 HETATM 5 C C1 UUB . . . E 3 -21.537 -2.635 24.311 1 91.53 ? C1 UUB 2000 A 1 HETATM 6 C C2 UUB . . . E 3 -21.858 -3.383 23.175 1 86.44 ? C2 UUB 2000 A 1 HETATM 7 C C5 UUB . . . E 3 -19.632 -4.044 24.773 1 88.21 ? C5 UUB 2000 A 1 HETATM 8 C C4 UUB . . . E 3 -19.991 -4.778 23.612 1 81.12 ? C4 UUB 2000 A 1 HETATM 9 C C3 UUB . . . E 3 -21.074 -4.472 22.819 1 84.52 ? C3 UUB 2000 A 1 HETATM 10 C C10 UUB . . . E 3 -17.694 -4.385 26.412 1 76.85 ? C10 UUB 2000 A 1 HETATM 11 C C18 UUB . . . E 3 -16.447 -0.371 27.05 1 86.18 ? C18 UUB 2000 A 1 HETATM 12 C C19 UUB . . . E 3 -16.714 0.701 28.122 1 84.82 ? C19 UUB 2000 A 1 HETATM 13 C C20 UUB . . . E 3 -17.572 1.861 27.576 1 84.48 ? C20 UUB 2000 A 1 HETATM 14 C C21 UUB . . . E 3 -17.145 2.179 26.151 1 80.42 ? C21 UUB 2000 A 1 HETATM 15 C C22 UUB . . . E 3 -15.72 1.714 25.877 1 75.34 ? C22 UUB 2000 A 1 HETATM 16 C C23 UUB . . . E 3 -15.557 0.211 25.967 1 77.71 ? C23 UUB 2000 A 1 HETATM 17 C C25 UUB . . . E 3 -19.739 2.626 27.54 1 93.64 ? C25 UUB 2000 A 1 HETATM 18 C C26 UUB . . . E 3 -20.05 3.177 26.336 1 99.59 ? C26 UUB 2000 A 1 HETATM 19 C C27 UUB . . . E 3 -20.832 4.297 26.392 1 107.74 ? C27 UUB 2000 A 1 HETATM 20 C C28 UUB . . . E 3 -21.338 4.88 27.554 1 114.9 ? C28 UUB 2000 A 1 HETATM 21 C C29 UUB . . . E 3 -20.985 4.365 28.783 1 107.97 ? C29 UUB 2000 A 1 HETATM 22 C C30 UUB . . . E 3 -20.195 3.206 28.744 1 94.2 ? C30 UUB 2000 A 1 HETATM 23 C C32 UUB . . . E 3 -21.553 7.066 25.937 1 137.41 ? C32 UUB 2000 A 1 HETATM 24 C C33 UUB . . . E 3 -22.112 8.46 25.33 1 137.87 ? C33 UUB 2000 A 1 HETATM 25 C C35 UUB . . . E 3 -21.869 9.768 26.565 1 139.76 ? C35 UUB 2000 A 1 HETATM 26 C C36 UUB . . . E 3 -21.879 10.734 25.191 1 139.42 ? C36 UUB 2000 A 1 HETATM 27 C C38 UUB . . . E 3 -20.444 10.5 23.308 1 128.12 ? C38 UUB 2000 A 1 HETATM 28 C C39 UUB . . . E 3 -20.122 12.294 24.833 1 131.68 ? C39 UUB 2000 A 1 HETATM 29 C C6 UUB . . . E 3 -20.432 -2.965 25.101 1 87.67 ? C6 UUB 2000 A 1 HETATM 30 C C8 UUB . . . E 3 -18.144 -5.828 24.397 1 91.85 ? C8 UUB 2000 A 1 HETATM 31 C C9 UUB . . . E 3 -18.498 -4.771 25.162 1 83.45 ? C9 UUB 2000 A 1 HETATM 32 N N11 UUB . . . E 3 -17.128 -3.2 26.484 1 77.01 ? N11 UUB 2000 A 1 HETATM 33 N N13 UUB . . . E 3 -16.291 -3.729 28.605 1 68.07 ? N13 UUB 2000 A 1 HETATM 34 N N17 UUB . . . E 3 -15.786 -1.516 27.658 1 82.78 ? N17 UUB 2000 A 1 HETATM 35 N N31 UUB . . . E 3 -22.066 6.158 27.098 1 130.02 ? N31 UUB 2000 A 1 HETATM 36 N N37 UUB . . . E 3 -20.516 10.9 24.707 1 133.95 ? N37 UUB 2000 A 1 HETATM 37 N N7 UUB . . . E 3 -19.111 -5.764 23.464 1 96.7 ? N7 UUB 2000 A 1 HETATM 38 O O34 UUB . . . E 3 -20.537 6.777 25.406 1 130.96 ? O34 UUB 2000 A 1 HETATM 39 CL CL1 UUB . . . E 3 -18.341 -6.863 27.308 1 108.52 ? CL1 UUB 2000 A 1 HETATM 40 H H5 UUB . . . E 3 -22.596 -3.152 22.659 1 103.66 ? H5 UUB 2000 A 1 HETATM 41 H H33 UUB . . . E 3 -20.234 -2.455 25.854 1 105.14 ? H33 UUB 2000 A 1 HETATM 42 H H39 UUB . . . E 3 -19.157 -6.325 22.814 1 115.97 ? H39 UUB 2000 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 504 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 42 #