data_7NY8 # _model_server_result.job_id n8C0YJpVFB2FIxCMOtN5CQ _model_server_result.datetime_utc '2025-02-26 14:51:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ny8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 7NY8 # _exptl.entry_id 7NY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.7 _cell.angle_gamma 90 _cell.entry_id 7NY8 _cell.length_a 39.008 _cell.length_b 168.775 _cell.length_c 39.653 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,K 1 1 B,D,G,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 20 A SER 17 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc2 E O2B GDP . A GDP 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc3 F MG MG . A MG 202 1_555 I O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc4 F MG MG . A MG 202 1_555 I O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc5 F MG MG . A MG 202 1_555 I O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc6 F MG MG . A MG 202 1_555 I O HOH . A HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc7 B OG SER 20 B SER 17 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc8 G O3B GDP . B GDP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc9 H MG MG . B MG 202 1_555 J O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc10 H MG MG . B MG 202 1_555 J O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc11 H MG MG . B MG 202 1_555 J O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc12 H MG MG . B MG 202 1_555 J O HOH . B HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7NY8 _atom_sites.fract_transf_matrix[1][1] 0.025636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001209 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005925 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GDP A 1 201 201 GDP GDP . F 4 MG A 1 202 202 MG MG . G 3 GDP B 1 201 201 GDP GDP . H 4 MG B 1 202 202 MG MG . I 5 HOH A 1 301 219 HOH HOH . I 5 HOH A 2 302 31 HOH HOH . I 5 HOH A 3 303 237 HOH HOH . I 5 HOH A 4 304 5 HOH HOH . I 5 HOH A 5 305 22 HOH HOH . I 5 HOH A 6 306 61 HOH HOH . I 5 HOH A 7 307 176 HOH HOH . I 5 HOH A 8 308 54 HOH HOH . I 5 HOH A 9 309 48 HOH HOH . I 5 HOH A 10 310 29 HOH HOH . I 5 HOH A 11 311 220 HOH HOH . I 5 HOH A 12 312 150 HOH HOH . I 5 HOH A 13 313 222 HOH HOH . I 5 HOH A 14 314 278 HOH HOH . I 5 HOH A 15 315 158 HOH HOH . I 5 HOH A 16 316 202 HOH HOH . I 5 HOH A 17 317 112 HOH HOH . I 5 HOH A 18 318 205 HOH HOH . I 5 HOH A 19 319 203 HOH HOH . I 5 HOH A 20 320 56 HOH HOH . I 5 HOH A 21 321 69 HOH HOH . I 5 HOH A 22 322 204 HOH HOH . I 5 HOH A 23 323 218 HOH HOH . I 5 HOH A 24 324 179 HOH HOH . I 5 HOH A 25 325 1 HOH HOH . I 5 HOH A 26 326 133 HOH HOH . I 5 HOH A 27 327 180 HOH HOH . I 5 HOH A 28 328 128 HOH HOH . I 5 HOH A 29 329 93 HOH HOH . I 5 HOH A 30 330 89 HOH HOH . I 5 HOH A 31 331 62 HOH HOH . I 5 HOH A 32 332 6 HOH HOH . I 5 HOH A 33 333 245 HOH HOH . I 5 HOH A 34 334 268 HOH HOH . I 5 HOH A 35 335 98 HOH HOH . I 5 HOH A 36 336 131 HOH HOH . I 5 HOH A 37 337 13 HOH HOH . I 5 HOH A 38 338 7 HOH HOH . I 5 HOH A 39 339 200 HOH HOH . I 5 HOH A 40 340 57 HOH HOH . I 5 HOH A 41 341 253 HOH HOH . I 5 HOH A 42 342 92 HOH HOH . I 5 HOH A 43 343 216 HOH HOH . I 5 HOH A 44 344 169 HOH HOH . I 5 HOH A 45 345 74 HOH HOH . I 5 HOH A 46 346 75 HOH HOH . I 5 HOH A 47 347 100 HOH HOH . I 5 HOH A 48 348 132 HOH HOH . I 5 HOH A 49 349 261 HOH HOH . I 5 HOH A 50 350 27 HOH HOH . I 5 HOH A 51 351 96 HOH HOH . I 5 HOH A 52 352 14 HOH HOH . I 5 HOH A 53 353 39 HOH HOH . I 5 HOH A 54 354 26 HOH HOH . I 5 HOH A 55 355 289 HOH HOH . I 5 HOH A 56 356 182 HOH HOH . I 5 HOH A 57 357 271 HOH HOH . I 5 HOH A 58 358 18 HOH HOH . I 5 HOH A 59 359 3 HOH HOH . I 5 HOH A 60 360 153 HOH HOH . I 5 HOH A 61 361 10 HOH HOH . I 5 HOH A 62 362 44 HOH HOH . I 5 HOH A 63 363 8 HOH HOH . I 5 HOH A 64 364 41 HOH HOH . I 5 HOH A 65 365 273 HOH HOH . I 5 HOH A 66 366 197 HOH HOH . I 5 HOH A 67 367 291 HOH HOH . I 5 HOH A 68 368 167 HOH HOH . I 5 HOH A 69 369 183 HOH HOH . I 5 HOH A 70 370 33 HOH HOH . I 5 HOH A 71 371 122 HOH HOH . I 5 HOH A 72 372 233 HOH HOH . I 5 HOH A 73 373 247 HOH HOH . I 5 HOH A 74 374 42 HOH HOH . I 5 HOH A 75 375 4 HOH HOH . I 5 HOH A 76 376 81 HOH HOH . I 5 HOH A 77 377 108 HOH HOH . I 5 HOH A 78 378 275 HOH HOH . I 5 HOH A 79 379 17 HOH HOH . I 5 HOH A 80 380 68 HOH HOH . I 5 HOH A 81 381 99 HOH HOH . I 5 HOH A 82 382 184 HOH HOH . I 5 HOH A 83 383 79 HOH HOH . I 5 HOH A 84 384 187 HOH HOH . I 5 HOH A 85 385 87 HOH HOH . I 5 HOH A 86 386 306 HOH HOH . I 5 HOH A 87 387 20 HOH HOH . I 5 HOH A 88 388 70 HOH HOH . I 5 HOH A 89 389 51 HOH HOH . I 5 HOH A 90 390 16 HOH HOH . I 5 HOH A 91 391 66 HOH HOH . I 5 HOH A 92 392 72 HOH HOH . I 5 HOH A 93 393 260 HOH HOH . I 5 HOH A 94 394 58 HOH HOH . I 5 HOH A 95 395 155 HOH HOH . I 5 HOH A 96 396 280 HOH HOH . I 5 HOH A 97 397 11 HOH HOH . I 5 HOH A 98 398 95 HOH HOH . I 5 HOH A 99 399 28 HOH HOH . I 5 HOH A 100 400 53 HOH HOH . I 5 HOH A 101 401 287 HOH HOH . I 5 HOH A 102 402 103 HOH HOH . I 5 HOH A 103 403 211 HOH HOH . I 5 HOH A 104 404 111 HOH HOH . I 5 HOH A 105 405 154 HOH HOH . I 5 HOH A 106 406 223 HOH HOH . I 5 HOH A 107 407 106 HOH HOH . I 5 HOH A 108 408 256 HOH HOH . I 5 HOH A 109 409 201 HOH HOH . I 5 HOH A 110 410 217 HOH HOH . I 5 HOH A 111 411 232 HOH HOH . I 5 HOH A 112 412 94 HOH HOH . I 5 HOH A 113 413 125 HOH HOH . I 5 HOH A 114 414 30 HOH HOH . I 5 HOH A 115 415 215 HOH HOH . I 5 HOH A 116 416 67 HOH HOH . I 5 HOH A 117 417 191 HOH HOH . I 5 HOH A 118 418 301 HOH HOH . I 5 HOH A 119 419 80 HOH HOH . I 5 HOH A 120 420 60 HOH HOH . I 5 HOH A 121 421 55 HOH HOH . J 5 HOH B 1 301 120 HOH HOH . J 5 HOH B 2 302 15 HOH HOH . J 5 HOH B 3 303 227 HOH HOH . J 5 HOH B 4 304 76 HOH HOH . J 5 HOH B 5 305 185 HOH HOH . J 5 HOH B 6 306 24 HOH HOH . J 5 HOH B 7 307 40 HOH HOH . J 5 HOH B 8 308 119 HOH HOH . J 5 HOH B 9 309 199 HOH HOH . J 5 HOH B 10 310 25 HOH HOH . J 5 HOH B 11 311 97 HOH HOH . J 5 HOH B 12 312 279 HOH HOH . J 5 HOH B 13 313 127 HOH HOH . J 5 HOH B 14 314 234 HOH HOH . J 5 HOH B 15 315 235 HOH HOH . J 5 HOH B 16 316 38 HOH HOH . J 5 HOH B 17 317 259 HOH HOH . J 5 HOH B 18 318 47 HOH HOH . J 5 HOH B 19 319 285 HOH HOH . J 5 HOH B 20 320 276 HOH HOH . J 5 HOH B 21 321 21 HOH HOH . J 5 HOH B 22 322 85 HOH HOH . J 5 HOH B 23 323 116 HOH HOH . J 5 HOH B 24 324 101 HOH HOH . J 5 HOH B 25 325 129 HOH HOH . J 5 HOH B 26 326 43 HOH HOH . J 5 HOH B 27 327 246 HOH HOH . J 5 HOH B 28 328 269 HOH HOH . J 5 HOH B 29 329 293 HOH HOH . J 5 HOH B 30 330 136 HOH HOH . J 5 HOH B 31 331 270 HOH HOH . J 5 HOH B 32 332 142 HOH HOH . J 5 HOH B 33 333 262 HOH HOH . J 5 HOH B 34 334 32 HOH HOH . J 5 HOH B 35 335 23 HOH HOH . J 5 HOH B 36 336 239 HOH HOH . J 5 HOH B 37 337 88 HOH HOH . J 5 HOH B 38 338 250 HOH HOH . J 5 HOH B 39 339 299 HOH HOH . J 5 HOH B 40 340 163 HOH HOH . J 5 HOH B 41 341 228 HOH HOH . J 5 HOH B 42 342 124 HOH HOH . J 5 HOH B 43 343 114 HOH HOH . J 5 HOH B 44 344 115 HOH HOH . J 5 HOH B 45 345 49 HOH HOH . J 5 HOH B 46 346 295 HOH HOH . J 5 HOH B 47 347 147 HOH HOH . J 5 HOH B 48 348 113 HOH HOH . J 5 HOH B 49 349 144 HOH HOH . J 5 HOH B 50 350 36 HOH HOH . J 5 HOH B 51 351 138 HOH HOH . K 5 HOH C 1 201 160 HOH HOH . K 5 HOH C 2 202 52 HOH HOH . K 5 HOH C 3 203 267 HOH HOH . K 5 HOH C 4 204 135 HOH HOH . K 5 HOH C 5 205 71 HOH HOH . K 5 HOH C 6 206 137 HOH HOH . K 5 HOH C 7 207 45 HOH HOH . K 5 HOH C 8 208 226 HOH HOH . K 5 HOH C 9 209 263 HOH HOH . K 5 HOH C 10 210 206 HOH HOH . K 5 HOH C 11 211 181 HOH HOH . K 5 HOH C 12 212 294 HOH HOH . K 5 HOH C 13 213 274 HOH HOH . K 5 HOH C 14 214 168 HOH HOH . K 5 HOH C 15 215 59 HOH HOH . K 5 HOH C 16 216 188 HOH HOH . K 5 HOH C 17 217 221 HOH HOH . K 5 HOH C 18 218 208 HOH HOH . K 5 HOH C 19 219 297 HOH HOH . K 5 HOH C 20 220 126 HOH HOH . K 5 HOH C 21 221 2 HOH HOH . K 5 HOH C 22 222 213 HOH HOH . K 5 HOH C 23 223 156 HOH HOH . K 5 HOH C 24 224 145 HOH HOH . K 5 HOH C 25 225 254 HOH HOH . K 5 HOH C 26 226 117 HOH HOH . K 5 HOH C 27 227 290 HOH HOH . K 5 HOH C 28 228 146 HOH HOH . K 5 HOH C 29 229 35 HOH HOH . K 5 HOH C 30 230 91 HOH HOH . K 5 HOH C 31 231 63 HOH HOH . K 5 HOH C 32 232 164 HOH HOH . K 5 HOH C 33 233 110 HOH HOH . K 5 HOH C 34 234 236 HOH HOH . K 5 HOH C 35 235 84 HOH HOH . K 5 HOH C 36 236 283 HOH HOH . K 5 HOH C 37 237 46 HOH HOH . K 5 HOH C 38 238 86 HOH HOH . K 5 HOH C 39 239 272 HOH HOH . K 5 HOH C 40 240 139 HOH HOH . K 5 HOH C 41 241 78 HOH HOH . K 5 HOH C 42 242 130 HOH HOH . K 5 HOH C 43 243 170 HOH HOH . K 5 HOH C 44 244 134 HOH HOH . K 5 HOH C 45 245 252 HOH HOH . K 5 HOH C 46 246 37 HOH HOH . K 5 HOH C 47 247 165 HOH HOH . K 5 HOH C 48 248 157 HOH HOH . K 5 HOH C 49 249 302 HOH HOH . K 5 HOH C 50 250 251 HOH HOH . K 5 HOH C 51 251 284 HOH HOH . K 5 HOH C 52 252 171 HOH HOH . K 5 HOH C 53 253 300 HOH HOH . K 5 HOH C 54 254 193 HOH HOH . K 5 HOH C 55 255 225 HOH HOH . K 5 HOH C 56 256 34 HOH HOH . K 5 HOH C 57 257 238 HOH HOH . K 5 HOH C 58 258 304 HOH HOH . L 5 HOH D 1 201 210 HOH HOH . L 5 HOH D 2 202 102 HOH HOH . L 5 HOH D 3 203 281 HOH HOH . L 5 HOH D 4 204 104 HOH HOH . L 5 HOH D 5 205 264 HOH HOH . L 5 HOH D 6 206 292 HOH HOH . L 5 HOH D 7 207 50 HOH HOH . L 5 HOH D 8 208 277 HOH HOH . L 5 HOH D 9 209 230 HOH HOH . L 5 HOH D 10 210 249 HOH HOH . L 5 HOH D 11 211 244 HOH HOH . L 5 HOH D 12 212 152 HOH HOH . L 5 HOH D 13 213 186 HOH HOH . L 5 HOH D 14 214 231 HOH HOH . L 5 HOH D 15 215 107 HOH HOH . L 5 HOH D 16 216 282 HOH HOH . L 5 HOH D 17 217 161 HOH HOH . L 5 HOH D 18 218 149 HOH HOH . L 5 HOH D 19 219 303 HOH HOH . L 5 HOH D 20 220 224 HOH HOH . L 5 HOH D 21 221 248 HOH HOH . L 5 HOH D 22 222 64 HOH HOH . L 5 HOH D 23 223 172 HOH HOH . L 5 HOH D 24 224 90 HOH HOH . L 5 HOH D 25 225 229 HOH HOH . L 5 HOH D 26 226 265 HOH HOH . L 5 HOH D 27 227 298 HOH HOH . L 5 HOH D 28 228 305 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -3.442 _atom_site.Cartn_y 28.046 _atom_site.Cartn_z 32.065 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #