data_7NYL # _model_server_result.job_id DTGhzaDIrkdM2SwRaC9YxQ _model_server_result.datetime_utc '2024-11-05 00:52:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 7NYL # _exptl.entry_id 7NYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.274 _cell.angle_gamma 90 _cell.entry_id 7NYL _cell.length_a 28.055 _cell.length_b 45.551 _cell.length_c 46.006 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F 1 1 C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,y-1/2,-z -1 0 0 0 1 0 0 0 -1 -28.055 -22.7755 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC CCC 1 TRE 2 n C GLC 2 C 2 GLC CCC 1 TRE # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id C1 _struct_conn.ptnr1_label_comp_id GLC _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id GLC _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id O1 _struct_conn.ptnr2_label_comp_id GLC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id GLC _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.431 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 248 n n O1 HO1 PG4 sing 249 n n C1 C2 PG4 sing 250 n n C1 H11 PG4 sing 251 n n C1 H12 PG4 sing 252 n n C2 O2 PG4 sing 253 n n C2 H21 PG4 sing 254 n n C2 H22 PG4 sing 255 n n O2 C3 PG4 sing 256 n n C3 C4 PG4 sing 257 n n C3 H31 PG4 sing 258 n n C3 H32 PG4 sing 259 n n C4 O3 PG4 sing 260 n n C4 H41 PG4 sing 261 n n C4 H42 PG4 sing 262 n n O3 C5 PG4 sing 263 n n C5 C6 PG4 sing 264 n n C5 H51 PG4 sing 265 n n C5 H52 PG4 sing 266 n n C6 O4 PG4 sing 267 n n C6 H61 PG4 sing 268 n n C6 H62 PG4 sing 269 n n O4 C7 PG4 sing 270 n n C7 C8 PG4 sing 271 n n C7 H71 PG4 sing 272 n n C7 H72 PG4 sing 273 n n C8 O5 PG4 sing 274 n n C8 H81 PG4 sing 275 n n C8 H82 PG4 sing 276 n n O5 HO5 PG4 sing 277 n n # _atom_sites.entry_id 7NYL _atom_sites.fract_transf_matrix[1][1] 0.035644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009068 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PG4 AAA 1 601 1 PG4 PG4 . E 4 HOH AAA 1 701 43 HOH HOH . E 4 HOH AAA 2 702 47 HOH HOH . E 4 HOH AAA 3 703 42 HOH HOH . E 4 HOH AAA 4 704 32 HOH HOH . E 4 HOH AAA 5 705 44 HOH HOH . E 4 HOH AAA 6 706 11 HOH HOH . E 4 HOH AAA 7 707 30 HOH HOH . E 4 HOH AAA 8 708 5 HOH HOH . E 4 HOH AAA 9 709 8 HOH HOH . E 4 HOH AAA 10 710 36 HOH HOH . E 4 HOH AAA 11 711 33 HOH HOH . E 4 HOH AAA 12 712 31 HOH HOH . E 4 HOH AAA 13 713 2 HOH HOH . E 4 HOH AAA 14 714 24 HOH HOH . E 4 HOH AAA 15 715 23 HOH HOH . E 4 HOH AAA 16 716 46 HOH HOH . E 4 HOH AAA 17 717 37 HOH HOH . E 4 HOH AAA 18 718 13 HOH HOH . E 4 HOH AAA 19 719 41 HOH HOH . E 4 HOH AAA 20 720 48 HOH HOH . E 4 HOH AAA 21 721 34 HOH HOH . E 4 HOH AAA 22 722 40 HOH HOH . E 4 HOH AAA 23 723 29 HOH HOH . E 4 HOH AAA 24 724 45 HOH HOH . E 4 HOH AAA 25 725 39 HOH HOH . E 4 HOH AAA 26 726 38 HOH HOH . F 4 HOH BBB 1 601 25 HOH HOH . F 4 HOH BBB 2 602 9 HOH HOH . F 4 HOH BBB 3 603 22 HOH HOH . F 4 HOH BBB 4 604 16 HOH HOH . F 4 HOH BBB 5 605 12 HOH HOH . F 4 HOH BBB 6 606 15 HOH HOH . F 4 HOH BBB 7 607 26 HOH HOH . F 4 HOH BBB 8 608 3 HOH HOH . F 4 HOH BBB 9 609 6 HOH HOH . F 4 HOH BBB 10 610 4 HOH HOH . F 4 HOH BBB 11 611 10 HOH HOH . F 4 HOH BBB 12 612 19 HOH HOH . F 4 HOH BBB 13 613 1 HOH HOH . F 4 HOH BBB 14 614 18 HOH HOH . F 4 HOH BBB 15 615 7 HOH HOH . F 4 HOH BBB 16 616 17 HOH HOH . F 4 HOH BBB 17 617 14 HOH HOH . F 4 HOH BBB 18 618 27 HOH HOH . F 4 HOH BBB 19 619 35 HOH HOH . F 4 HOH BBB 20 620 28 HOH HOH . F 4 HOH BBB 21 621 20 HOH HOH . F 4 HOH BBB 22 622 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . D 3 -15.656 0.547 -16.025 1 58.66 ? O1 PG4 601 AAA 1 HETATM 2 C C1 PG4 . . . D 3 -15.887 0.221 -14.656 1 64.71 ? C1 PG4 601 AAA 1 HETATM 3 C C2 PG4 . . . D 3 -14.721 0.574 -13.758 1 62.38 ? C2 PG4 601 AAA 1 HETATM 4 O O2 PG4 . . . D 3 -14.748 1.961 -13.416 1 58.68 ? O2 PG4 601 AAA 1 HETATM 5 C C3 PG4 . . . D 3 -14.765 2.212 -12.017 1 48.32 ? C3 PG4 601 AAA 1 HETATM 6 C C4 PG4 . . . D 3 -16.176 2.328 -11.593 1 48.65 ? C4 PG4 601 AAA 1 HETATM 7 O O3 PG4 . . . D 3 -16.257 2.24 -10.177 1 49.31 ? O3 PG4 601 AAA 1 HETATM 8 C C5 PG4 . . . D 3 -17.115 1.204 -9.71 1 53.22 ? C5 PG4 601 AAA 1 HETATM 9 C C6 PG4 . . . D 3 -18.556 1.612 -9.83 1 52.28 ? C6 PG4 601 AAA 1 HETATM 10 O O4 PG4 . . . D 3 -19.379 0.509 -9.454 1 60.83 ? O4 PG4 601 AAA 1 HETATM 11 C C7 PG4 . . . D 3 -19.697 -0.38 -10.525 1 60.37 ? C7 PG4 601 AAA 1 HETATM 12 C C8 PG4 . . . D 3 -19.726 -1.802 -10.026 1 65.84 ? C8 PG4 601 AAA 1 HETATM 13 O O5 PG4 . . . D 3 -18.552 -2.546 -10.368 1 63.55 ? O5 PG4 601 AAA 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #