data_7NYM
#
_model_server_result.job_id            EA3piFykj3STBvr71VwVuw 
_model_server_result.datetime_utc      '2024-11-23 02:35:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7nym 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":104}' 
#
_entry.id    7NYM 
#
_exptl.entry_id    7NYM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7NYM 
_cell.length_a            33.12 
_cell.length_b            84.254 
_cell.length_c            98.315 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7NYM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,L,M 1 1 
C,D,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 291 n n 
P O2 PO4 sing 292 n n 
P O3 PO4 sing 293 n n 
P O4 PO4 sing 294 n n 
#
_atom_sites.entry_id                     7NYM 
_atom_sites.fract_transf_matrix[1][1]    0.030193 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011869 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010171 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 AAA 1 601 6 SO4 SO4 . 
F 2 SO4 BBB 1 101 1 SO4 SO4 . 
G 3 P6G BBB 1 102 9 P6G P6G . 
H 3 P6G BBB 1 103 10 P6G P6G . 
I 4 PO4 BBB 1 104 1 PO4 PO4 . 
J 3 P6G CCC 1 601 8 P6G P6G . 
K 2 SO4 DDD 1 601 4 SO4 SO4 . 
L 5 HOH AAA 1 701 14 HOH HOH . 
L 5 HOH AAA 2 702 132 HOH HOH . 
L 5 HOH AAA 3 703 268 HOH HOH . 
L 5 HOH AAA 4 704 261 HOH HOH . 
L 5 HOH AAA 5 705 219 HOH HOH . 
L 5 HOH AAA 6 706 109 HOH HOH . 
L 5 HOH AAA 7 707 40 HOH HOH . 
L 5 HOH AAA 8 708 266 HOH HOH . 
L 5 HOH AAA 9 709 218 HOH HOH . 
L 5 HOH AAA 10 710 270 HOH HOH . 
L 5 HOH AAA 11 711 24 HOH HOH . 
L 5 HOH AAA 12 712 69 HOH HOH . 
L 5 HOH AAA 13 713 32 HOH HOH . 
L 5 HOH AAA 14 714 167 HOH HOH . 
L 5 HOH AAA 15 715 97 HOH HOH . 
L 5 HOH AAA 16 716 33 HOH HOH . 
L 5 HOH AAA 17 717 92 HOH HOH . 
L 5 HOH AAA 18 718 116 HOH HOH . 
L 5 HOH AAA 19 719 107 HOH HOH . 
L 5 HOH AAA 20 720 28 HOH HOH . 
L 5 HOH AAA 21 721 55 HOH HOH . 
L 5 HOH AAA 22 722 23 HOH HOH . 
L 5 HOH AAA 23 723 120 HOH HOH . 
L 5 HOH AAA 24 724 16 HOH HOH . 
L 5 HOH AAA 25 725 45 HOH HOH . 
L 5 HOH AAA 26 726 13 HOH HOH . 
L 5 HOH AAA 27 727 275 HOH HOH . 
L 5 HOH AAA 28 728 64 HOH HOH . 
L 5 HOH AAA 29 729 62 HOH HOH . 
L 5 HOH AAA 30 730 25 HOH HOH . 
L 5 HOH AAA 31 731 125 HOH HOH . 
L 5 HOH AAA 32 732 30 HOH HOH . 
L 5 HOH AAA 33 733 36 HOH HOH . 
L 5 HOH AAA 34 734 100 HOH HOH . 
L 5 HOH AAA 35 735 52 HOH HOH . 
L 5 HOH AAA 36 736 37 HOH HOH . 
L 5 HOH AAA 37 737 216 HOH HOH . 
L 5 HOH AAA 38 738 202 HOH HOH . 
L 5 HOH AAA 39 739 203 HOH HOH . 
L 5 HOH AAA 40 740 147 HOH HOH . 
L 5 HOH AAA 41 741 179 HOH HOH . 
L 5 HOH AAA 42 742 189 HOH HOH . 
L 5 HOH AAA 43 743 154 HOH HOH . 
L 5 HOH AAA 44 744 159 HOH HOH . 
L 5 HOH AAA 45 745 182 HOH HOH . 
L 5 HOH AAA 46 746 269 HOH HOH . 
L 5 HOH AAA 47 747 104 HOH HOH . 
M 5 HOH BBB 1 201 169 HOH HOH . 
M 5 HOH BBB 2 202 124 HOH HOH . 
M 5 HOH BBB 3 203 254 HOH HOH . 
M 5 HOH BBB 4 204 53 HOH HOH . 
M 5 HOH BBB 5 205 57 HOH HOH . 
M 5 HOH BBB 6 206 12 HOH HOH . 
M 5 HOH BBB 7 207 142 HOH HOH . 
M 5 HOH BBB 8 208 274 HOH HOH . 
M 5 HOH BBB 9 209 2 HOH HOH . 
M 5 HOH BBB 10 210 158 HOH HOH . 
M 5 HOH BBB 11 211 26 HOH HOH . 
M 5 HOH BBB 12 212 76 HOH HOH . 
M 5 HOH BBB 13 213 50 HOH HOH . 
M 5 HOH BBB 14 214 146 HOH HOH . 
M 5 HOH BBB 15 215 98 HOH HOH . 
M 5 HOH BBB 16 216 21 HOH HOH . 
M 5 HOH BBB 17 217 234 HOH HOH . 
M 5 HOH BBB 18 218 1 HOH HOH . 
M 5 HOH BBB 19 219 102 HOH HOH . 
M 5 HOH BBB 20 220 88 HOH HOH . 
M 5 HOH BBB 21 221 11 HOH HOH . 
M 5 HOH BBB 22 222 8 HOH HOH . 
M 5 HOH BBB 23 223 118 HOH HOH . 
M 5 HOH BBB 24 224 106 HOH HOH . 
M 5 HOH BBB 25 225 137 HOH HOH . 
M 5 HOH BBB 26 226 130 HOH HOH . 
M 5 HOH BBB 27 227 141 HOH HOH . 
M 5 HOH BBB 28 228 134 HOH HOH . 
M 5 HOH BBB 29 229 66 HOH HOH . 
M 5 HOH BBB 30 230 135 HOH HOH . 
M 5 HOH BBB 31 231 172 HOH HOH . 
M 5 HOH BBB 32 232 272 HOH HOH . 
M 5 HOH BBB 33 233 255 HOH HOH . 
M 5 HOH BBB 34 234 18 HOH HOH . 
M 5 HOH BBB 35 235 110 HOH HOH . 
M 5 HOH BBB 36 236 108 HOH HOH . 
M 5 HOH BBB 37 237 264 HOH HOH . 
M 5 HOH BBB 38 238 84 HOH HOH . 
M 5 HOH BBB 39 239 58 HOH HOH . 
M 5 HOH BBB 40 240 22 HOH HOH . 
M 5 HOH BBB 41 241 211 HOH HOH . 
M 5 HOH BBB 42 242 138 HOH HOH . 
M 5 HOH BBB 43 243 190 HOH HOH . 
M 5 HOH BBB 44 244 221 HOH HOH . 
M 5 HOH BBB 45 245 103 HOH HOH . 
M 5 HOH BBB 46 246 279 HOH HOH . 
M 5 HOH BBB 47 247 273 HOH HOH . 
M 5 HOH BBB 48 248 72 HOH HOH . 
M 5 HOH BBB 49 249 212 HOH HOH . 
M 5 HOH BBB 50 250 263 HOH HOH . 
M 5 HOH BBB 51 251 280 HOH HOH . 
M 5 HOH BBB 52 252 127 HOH HOH . 
M 5 HOH BBB 53 253 160 HOH HOH . 
M 5 HOH BBB 54 254 149 HOH HOH . 
M 5 HOH BBB 55 255 223 HOH HOH . 
M 5 HOH BBB 56 256 256 HOH HOH . 
M 5 HOH BBB 57 257 224 HOH HOH . 
M 5 HOH BBB 58 258 180 HOH HOH . 
M 5 HOH BBB 59 259 230 HOH HOH . 
M 5 HOH BBB 60 260 265 HOH HOH . 
M 5 HOH BBB 61 261 174 HOH HOH . 
M 5 HOH BBB 62 262 194 HOH HOH . 
M 5 HOH BBB 63 263 181 HOH HOH . 
N 5 HOH CCC 1 701 197 HOH HOH . 
N 5 HOH CCC 2 702 186 HOH HOH . 
N 5 HOH CCC 3 703 119 HOH HOH . 
N 5 HOH CCC 4 704 54 HOH HOH . 
N 5 HOH CCC 5 705 60 HOH HOH . 
N 5 HOH CCC 6 706 10 HOH HOH . 
N 5 HOH CCC 7 707 35 HOH HOH . 
N 5 HOH CCC 8 708 44 HOH HOH . 
N 5 HOH CCC 9 709 56 HOH HOH . 
N 5 HOH CCC 10 710 75 HOH HOH . 
N 5 HOH CCC 11 711 39 HOH HOH . 
N 5 HOH CCC 12 712 34 HOH HOH . 
N 5 HOH CCC 13 713 38 HOH HOH . 
N 5 HOH CCC 14 714 80 HOH HOH . 
N 5 HOH CCC 15 715 19 HOH HOH . 
N 5 HOH CCC 16 716 191 HOH HOH . 
N 5 HOH CCC 17 717 198 HOH HOH . 
N 5 HOH CCC 18 718 70 HOH HOH . 
N 5 HOH CCC 19 719 27 HOH HOH . 
N 5 HOH CCC 20 720 85 HOH HOH . 
N 5 HOH CCC 21 721 51 HOH HOH . 
N 5 HOH CCC 22 722 277 HOH HOH . 
N 5 HOH CCC 23 723 90 HOH HOH . 
N 5 HOH CCC 24 724 129 HOH HOH . 
N 5 HOH CCC 25 725 165 HOH HOH . 
N 5 HOH CCC 26 726 63 HOH HOH . 
N 5 HOH CCC 27 727 79 HOH HOH . 
N 5 HOH CCC 28 728 113 HOH HOH . 
N 5 HOH CCC 29 729 4 HOH HOH . 
N 5 HOH CCC 30 730 166 HOH HOH . 
N 5 HOH CCC 31 731 278 HOH HOH . 
N 5 HOH CCC 32 732 173 HOH HOH . 
N 5 HOH CCC 33 733 41 HOH HOH . 
N 5 HOH CCC 34 734 123 HOH HOH . 
N 5 HOH CCC 35 735 61 HOH HOH . 
N 5 HOH CCC 36 736 9 HOH HOH . 
N 5 HOH CCC 37 737 257 HOH HOH . 
N 5 HOH CCC 38 738 49 HOH HOH . 
N 5 HOH CCC 39 739 105 HOH HOH . 
N 5 HOH CCC 40 740 262 HOH HOH . 
N 5 HOH CCC 41 741 276 HOH HOH . 
N 5 HOH CCC 42 742 238 HOH HOH . 
N 5 HOH CCC 43 743 163 HOH HOH . 
N 5 HOH CCC 44 744 271 HOH HOH . 
N 5 HOH CCC 45 745 192 HOH HOH . 
N 5 HOH CCC 46 746 240 HOH HOH . 
N 5 HOH CCC 47 747 239 HOH HOH . 
N 5 HOH CCC 48 748 178 HOH HOH . 
N 5 HOH CCC 49 749 94 HOH HOH . 
N 5 HOH CCC 50 750 42 HOH HOH . 
N 5 HOH CCC 51 751 177 HOH HOH . 
N 5 HOH CCC 52 752 193 HOH HOH . 
N 5 HOH CCC 53 753 86 HOH HOH . 
N 5 HOH CCC 54 754 196 HOH HOH . 
N 5 HOH CCC 55 755 46 HOH HOH . 
N 5 HOH CCC 56 756 170 HOH HOH . 
O 5 HOH DDD 1 701 7 HOH HOH . 
O 5 HOH DDD 2 702 126 HOH HOH . 
O 5 HOH DDD 3 703 200 HOH HOH . 
O 5 HOH DDD 4 704 17 HOH HOH . 
O 5 HOH DDD 5 705 168 HOH HOH . 
O 5 HOH DDD 6 706 83 HOH HOH . 
O 5 HOH DDD 7 707 29 HOH HOH . 
O 5 HOH DDD 8 708 31 HOH HOH . 
O 5 HOH DDD 9 709 82 HOH HOH . 
O 5 HOH DDD 10 710 20 HOH HOH . 
O 5 HOH DDD 11 711 208 HOH HOH . 
O 5 HOH DDD 12 712 93 HOH HOH . 
O 5 HOH DDD 13 713 136 HOH HOH . 
O 5 HOH DDD 14 714 87 HOH HOH . 
O 5 HOH DDD 15 715 15 HOH HOH . 
O 5 HOH DDD 16 716 201 HOH HOH . 
O 5 HOH DDD 17 717 6 HOH HOH . 
O 5 HOH DDD 18 718 5 HOH HOH . 
O 5 HOH DDD 19 719 43 HOH HOH . 
O 5 HOH DDD 20 720 65 HOH HOH . 
O 5 HOH DDD 21 721 3 HOH HOH . 
O 5 HOH DDD 22 722 128 HOH HOH . 
O 5 HOH DDD 23 723 47 HOH HOH . 
O 5 HOH DDD 24 724 171 HOH HOH . 
O 5 HOH DDD 25 725 122 HOH HOH . 
O 5 HOH DDD 26 726 91 HOH HOH . 
O 5 HOH DDD 27 727 77 HOH HOH . 
O 5 HOH DDD 28 728 151 HOH HOH . 
O 5 HOH DDD 29 729 206 HOH HOH . 
O 5 HOH DDD 30 730 68 HOH HOH . 
O 5 HOH DDD 31 731 112 HOH HOH . 
O 5 HOH DDD 32 732 249 HOH HOH . 
O 5 HOH DDD 33 733 73 HOH HOH . 
O 5 HOH DDD 34 734 59 HOH HOH . 
O 5 HOH DDD 35 735 71 HOH HOH . 
O 5 HOH DDD 36 736 74 HOH HOH . 
O 5 HOH DDD 37 737 144 HOH HOH . 
O 5 HOH DDD 38 738 115 HOH HOH . 
O 5 HOH DDD 39 739 248 HOH HOH . 
O 5 HOH DDD 40 740 267 HOH HOH . 
O 5 HOH DDD 41 741 175 HOH HOH . 
O 5 HOH DDD 42 742 214 HOH HOH . 
O 5 HOH DDD 43 743 185 HOH HOH . 
O 5 HOH DDD 44 744 153 HOH HOH . 
O 5 HOH DDD 45 745 250 HOH HOH . 
O 5 HOH DDD 46 746 188 HOH HOH . 
O 5 HOH DDD 47 747 48 HOH HOH . 
O 5 HOH DDD 48 748 81 HOH HOH . 
O 5 HOH DDD 49 749 101 HOH HOH . 
O 5 HOH DDD 50 750 95 HOH HOH . 
O 5 HOH DDD 51 751 152 HOH HOH . 
O 5 HOH DDD 52 752 251 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . I 4 -31.494 15.553 -14.924 1 40.2 ? P PO4 104 BBB 1 
HETATM 2 O O1 PO4 . . . I 4 -31.285 14.57 -16.058 1 55.19 ? O1 PO4 104 BBB 1 
HETATM 3 O O2 PO4 . . . I 4 -32.609 16.566 -15.304 1 47.43 ? O2 PO4 104 BBB 1 
HETATM 4 O O3 PO4 . . . I 4 -30.186 16.259 -14.647 1 32.4 ? O3 PO4 104 BBB 1 
HETATM 5 O O4 PO4 . . . I 4 -31.946 14.754 -13.686 1 47.37 ? O4 PO4 104 BBB 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           5 
#