data_7NZF # _model_server_result.job_id w3QefokRTzpct_5p86c6Qw _model_server_result.datetime_utc '2024-11-16 10:40:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nzf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7NZF # _exptl.entry_id 7NZF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NZF _cell.length_a 71.441 _cell.length_b 71.441 _cell.length_c 138.049 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 AAA CYS 107 1_555 A SG CYS 163 AAA CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf2 B SG CYS 15 BBB CYS 15 1_555 B SG CYS 79 BBB CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? disulf ? disulf3 B SG CYS 117 BBB CYS 117 1_555 B SG CYS 173 BBB CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 78 AAA ASN 78 1_555 D C1 NAG . AAA NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 118 AAA ASN 118 1_555 E C1 NAG . AAA NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7NZF _atom_sites.fract_transf_matrix[1][1] 0.013998 _atom_sites.fract_transf_matrix[1][2] 0.008081 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG AAA 1 201 181 NAG NAG . E 4 NAG AAA 1 202 183 NAG NAG . F 5 HOH AAA 1 301 138 HOH HOH . F 5 HOH AAA 2 302 21 HOH HOH . F 5 HOH AAA 3 303 122 HOH HOH . F 5 HOH AAA 4 304 76 HOH HOH . F 5 HOH AAA 5 305 101 HOH HOH . F 5 HOH AAA 6 306 130 HOH HOH . F 5 HOH AAA 7 307 40 HOH HOH . F 5 HOH AAA 8 308 86 HOH HOH . F 5 HOH AAA 9 309 137 HOH HOH . F 5 HOH AAA 10 310 90 HOH HOH . F 5 HOH AAA 11 311 28 HOH HOH . F 5 HOH AAA 12 312 105 HOH HOH . F 5 HOH AAA 13 313 136 HOH HOH . F 5 HOH AAA 14 314 146 HOH HOH . F 5 HOH AAA 15 315 55 HOH HOH . F 5 HOH AAA 16 316 13 HOH HOH . F 5 HOH AAA 17 317 56 HOH HOH . F 5 HOH AAA 18 318 77 HOH HOH . F 5 HOH AAA 19 319 167 HOH HOH . F 5 HOH AAA 20 320 25 HOH HOH . F 5 HOH AAA 21 321 37 HOH HOH . F 5 HOH AAA 22 322 147 HOH HOH . F 5 HOH AAA 23 323 142 HOH HOH . F 5 HOH AAA 24 324 158 HOH HOH . F 5 HOH AAA 25 325 96 HOH HOH . F 5 HOH AAA 26 326 39 HOH HOH . F 5 HOH AAA 27 327 29 HOH HOH . F 5 HOH AAA 28 328 128 HOH HOH . F 5 HOH AAA 29 329 127 HOH HOH . F 5 HOH AAA 30 330 15 HOH HOH . F 5 HOH AAA 31 331 97 HOH HOH . F 5 HOH AAA 32 332 49 HOH HOH . F 5 HOH AAA 33 333 100 HOH HOH . F 5 HOH AAA 34 334 35 HOH HOH . F 5 HOH AAA 35 335 74 HOH HOH . F 5 HOH AAA 36 336 103 HOH HOH . F 5 HOH AAA 37 337 116 HOH HOH . F 5 HOH AAA 38 338 32 HOH HOH . F 5 HOH AAA 39 339 59 HOH HOH . F 5 HOH AAA 40 340 82 HOH HOH . F 5 HOH AAA 41 341 145 HOH HOH . F 5 HOH AAA 42 342 102 HOH HOH . F 5 HOH AAA 43 343 107 HOH HOH . F 5 HOH AAA 44 344 120 HOH HOH . F 5 HOH AAA 45 345 47 HOH HOH . F 5 HOH AAA 46 346 113 HOH HOH . F 5 HOH AAA 47 347 9 HOH HOH . F 5 HOH AAA 48 348 54 HOH HOH . F 5 HOH AAA 49 349 18 HOH HOH . F 5 HOH AAA 50 350 65 HOH HOH . F 5 HOH AAA 51 351 1 HOH HOH . F 5 HOH AAA 52 352 33 HOH HOH . F 5 HOH AAA 53 353 64 HOH HOH . F 5 HOH AAA 54 354 10 HOH HOH . F 5 HOH AAA 55 355 83 HOH HOH . F 5 HOH AAA 56 356 80 HOH HOH . F 5 HOH AAA 57 357 132 HOH HOH . F 5 HOH AAA 58 358 24 HOH HOH . F 5 HOH AAA 59 359 27 HOH HOH . F 5 HOH AAA 60 360 182 HOH HOH . F 5 HOH AAA 61 361 31 HOH HOH . F 5 HOH AAA 62 362 11 HOH HOH . F 5 HOH AAA 63 363 42 HOH HOH . F 5 HOH AAA 64 364 60 HOH HOH . F 5 HOH AAA 65 365 20 HOH HOH . F 5 HOH AAA 66 366 57 HOH HOH . F 5 HOH AAA 67 367 62 HOH HOH . F 5 HOH AAA 68 368 52 HOH HOH . F 5 HOH AAA 69 369 26 HOH HOH . F 5 HOH AAA 70 370 79 HOH HOH . F 5 HOH AAA 71 371 155 HOH HOH . F 5 HOH AAA 72 372 45 HOH HOH . F 5 HOH AAA 73 373 143 HOH HOH . F 5 HOH AAA 74 374 99 HOH HOH . F 5 HOH AAA 75 375 70 HOH HOH . F 5 HOH AAA 76 376 148 HOH HOH . F 5 HOH AAA 77 377 58 HOH HOH . F 5 HOH AAA 78 378 71 HOH HOH . F 5 HOH AAA 79 379 171 HOH HOH . F 5 HOH AAA 80 380 175 HOH HOH . F 5 HOH AAA 81 381 44 HOH HOH . F 5 HOH AAA 82 382 140 HOH HOH . F 5 HOH AAA 83 383 6 HOH HOH . F 5 HOH AAA 84 384 8 HOH HOH . F 5 HOH AAA 85 385 75 HOH HOH . F 5 HOH AAA 86 386 98 HOH HOH . F 5 HOH AAA 87 387 177 HOH HOH . F 5 HOH AAA 88 388 150 HOH HOH . F 5 HOH AAA 89 389 173 HOH HOH . F 5 HOH AAA 90 390 183 HOH HOH . F 5 HOH AAA 91 391 172 HOH HOH . F 5 HOH AAA 92 392 176 HOH HOH . F 5 HOH AAA 93 393 164 HOH HOH . F 5 HOH AAA 94 394 63 HOH HOH . G 5 HOH BBB 1 201 36 HOH HOH . G 5 HOH BBB 2 202 2 HOH HOH . G 5 HOH BBB 3 203 91 HOH HOH . G 5 HOH BBB 4 204 73 HOH HOH . G 5 HOH BBB 5 205 108 HOH HOH . G 5 HOH BBB 6 206 170 HOH HOH . G 5 HOH BBB 7 207 162 HOH HOH . G 5 HOH BBB 8 208 69 HOH HOH . G 5 HOH BBB 9 209 85 HOH HOH . G 5 HOH BBB 10 210 87 HOH HOH . G 5 HOH BBB 11 211 159 HOH HOH . G 5 HOH BBB 12 212 51 HOH HOH . G 5 HOH BBB 13 213 106 HOH HOH . G 5 HOH BBB 14 214 48 HOH HOH . G 5 HOH BBB 15 215 129 HOH HOH . G 5 HOH BBB 16 216 50 HOH HOH . G 5 HOH BBB 17 217 43 HOH HOH . G 5 HOH BBB 18 218 16 HOH HOH . G 5 HOH BBB 19 219 23 HOH HOH . G 5 HOH BBB 20 220 118 HOH HOH . G 5 HOH BBB 21 221 38 HOH HOH . G 5 HOH BBB 22 222 78 HOH HOH . G 5 HOH BBB 23 223 88 HOH HOH . G 5 HOH BBB 24 224 67 HOH HOH . G 5 HOH BBB 25 225 161 HOH HOH . G 5 HOH BBB 26 226 119 HOH HOH . G 5 HOH BBB 27 227 110 HOH HOH . G 5 HOH BBB 28 228 168 HOH HOH . G 5 HOH BBB 29 229 61 HOH HOH . G 5 HOH BBB 30 230 72 HOH HOH . G 5 HOH BBB 31 231 30 HOH HOH . G 5 HOH BBB 32 232 156 HOH HOH . G 5 HOH BBB 33 233 3 HOH HOH . G 5 HOH BBB 34 234 112 HOH HOH . G 5 HOH BBB 35 235 121 HOH HOH . G 5 HOH BBB 36 236 95 HOH HOH . G 5 HOH BBB 37 237 53 HOH HOH . G 5 HOH BBB 38 238 111 HOH HOH . G 5 HOH BBB 39 239 5 HOH HOH . G 5 HOH BBB 40 240 152 HOH HOH . G 5 HOH BBB 41 241 141 HOH HOH . G 5 HOH BBB 42 242 34 HOH HOH . G 5 HOH BBB 43 243 41 HOH HOH . G 5 HOH BBB 44 244 19 HOH HOH . G 5 HOH BBB 45 245 92 HOH HOH . G 5 HOH BBB 46 246 126 HOH HOH . G 5 HOH BBB 47 247 84 HOH HOH . G 5 HOH BBB 48 248 109 HOH HOH . G 5 HOH BBB 49 249 22 HOH HOH . G 5 HOH BBB 50 250 68 HOH HOH . G 5 HOH BBB 51 251 134 HOH HOH . G 5 HOH BBB 52 252 17 HOH HOH . G 5 HOH BBB 53 253 114 HOH HOH . G 5 HOH BBB 54 254 154 HOH HOH . G 5 HOH BBB 55 255 153 HOH HOH . G 5 HOH BBB 56 256 4 HOH HOH . G 5 HOH BBB 57 257 12 HOH HOH . G 5 HOH BBB 58 258 124 HOH HOH . G 5 HOH BBB 59 259 89 HOH HOH . G 5 HOH BBB 60 260 160 HOH HOH . G 5 HOH BBB 61 261 117 HOH HOH . G 5 HOH BBB 62 262 81 HOH HOH . G 5 HOH BBB 63 263 174 HOH HOH . G 5 HOH BBB 64 264 123 HOH HOH . G 5 HOH BBB 65 265 115 HOH HOH . G 5 HOH BBB 66 266 94 HOH HOH . G 5 HOH BBB 67 267 178 HOH HOH . G 5 HOH BBB 68 268 163 HOH HOH . G 5 HOH BBB 69 269 66 HOH HOH . G 5 HOH BBB 70 270 179 HOH HOH . G 5 HOH BBB 71 271 181 HOH HOH . G 5 HOH BBB 72 272 151 HOH HOH . G 5 HOH BBB 73 273 135 HOH HOH . G 5 HOH BBB 74 274 149 HOH HOH . H 5 HOH CCC 1 101 93 HOH HOH . H 5 HOH CCC 2 102 131 HOH HOH . H 5 HOH CCC 3 103 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 -10.39 2.423 -6.625 1 76.31 0 C1 NAG 201 AAA 1 HETATM 2 C C2 NAG . . . D 4 -11.682 2.856 -7.336 1 79.79 0 C2 NAG 201 AAA 1 HETATM 3 C C3 NAG . . . D 4 -12.817 2.593 -6.361 1 83.71 0 C3 NAG 201 AAA 1 HETATM 4 C C4 NAG . . . D 4 -12.887 1.13 -5.979 1 83.85 0 C4 NAG 201 AAA 1 HETATM 5 C C5 NAG . . . D 4 -11.611 0.753 -5.25 1 80.35 0 C5 NAG 201 AAA 1 HETATM 6 C C6 NAG . . . D 4 -11.64 -0.728 -4.799 1 80.55 0 C6 NAG 201 AAA 1 HETATM 7 C C7 NAG . . . D 4 -11.066 4.972 -8.643 1 78.54 0 C7 NAG 201 AAA 1 HETATM 8 C C8 NAG . . . D 4 -11.55 6.372 -8.89 1 80.8 0 C8 NAG 201 AAA 1 HETATM 9 N N2 NAG . . . D 4 -11.776 4.278 -7.732 1 80.7 0 N2 NAG 201 AAA 1 HETATM 10 O O3 NAG . . . D 4 -14.073 3.018 -6.904 1 87.39 0 O3 NAG 201 AAA 1 HETATM 11 O O4 NAG . . . D 4 -14.02 0.955 -5.127 1 88.16 0 O4 NAG 201 AAA 1 HETATM 12 O O5 NAG . . . D 4 -10.487 1.078 -6.091 1 76.48 0 O5 NAG 201 AAA 1 HETATM 13 O O6 NAG . . . D 4 -10.867 -1.602 -5.639 1 76.91 0 O6 NAG 201 AAA 1 HETATM 14 O O7 NAG . . . D 4 -10.111 4.554 -9.27 1 76.63 0 O7 NAG 201 AAA 1 HETATM 15 H H1 NAG . . . D 4 -10.246 3.113 -5.781 1 76.57 0 H1 NAG 201 AAA 1 HETATM 16 H H2 NAG . . . D 4 -11.826 2.226 -8.225 1 79.78 0 H2 NAG 201 AAA 1 HETATM 17 H H3 NAG . . . D 4 -12.614 3.169 -5.448 1 83.73 0 H3 NAG 201 AAA 1 HETATM 18 H H4 NAG . . . D 4 -12.986 0.518 -6.886 1 83.61 0 H4 NAG 201 AAA 1 HETATM 19 H H5 NAG . . . D 4 -11.555 1.369 -4.341 1 80.89 0 H5 NAG 201 AAA 1 HETATM 20 H H61 NAG . . . D 4 -12.67 -1.089 -4.775 1 83.42 0 H61 NAG 201 AAA 1 HETATM 21 H H62 NAG . . . D 4 -11.252 -0.792 -3.781 1 79.82 0 H62 NAG 201 AAA 1 HETATM 22 H H81 NAG . . . D 4 -11.375 6.963 -8.028 1 80.79 0 H81 NAG 201 AAA 1 HETATM 23 H H82 NAG . . . D 4 -11.03 6.787 -9.714 1 79.27 0 H82 NAG 201 AAA 1 HETATM 24 H H83 NAG . . . D 4 -12.588 6.355 -9.1 1 83.74 0 H83 NAG 201 AAA 1 HETATM 25 H HN2 NAG . . . D 4 -12.531 4.782 -7.289 1 83.28 0 HN2 NAG 201 AAA 1 HETATM 26 H HO3 NAG . . . D 4 -14.751 2.775 -6.274 0 30 0 HO3 NAG 201 AAA 1 HETATM 27 H HO4 NAG . . . D 4 -13.839 -0.006 -4.606 0 30 0 HO4 NAG 201 AAA 1 HETATM 28 H HO6 NAG . . . D 4 -11.43 -2.487 -5.615 0 30 0 HO6 NAG 201 AAA 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #