data_7NZH # _model_server_result.job_id pcJQPczYX32F-5LaYY5MNQ _model_server_result.datetime_utc '2025-03-12 15:44:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nzh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 7NZH # _exptl.entry_id 7NZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7NZH _cell.length_a 97.277 _cell.length_b 112.244 _cell.length_c 212.981 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 AbA 1 NAG AbA 183 NAG 4 n G NAG 2 AbA 2 NAG AcA 186 NAG 4 n H NAG 1 BaB 1 NAG BaB 191 NAG 4 n H NAG 2 BaB 2 NAG BbB 192 NAG 4 n I NAG 1 CaC 1 NAG CaC 183 NAG 4 n I NAG 2 CaC 2 NAG CbC 184 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 106 AAA CYS 107 1_555 A SG CYS 162 AAA CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf2 B SG CYS 14 BBB CYS 15 1_555 B SG CYS 78 BBB CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? disulf ? disulf3 B SG CYS 116 BBB CYS 117 1_555 B SG CYS 172 BBB CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 C SG CYS 106 CCC CYS 107 1_555 C SG CYS 162 CCC CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf5 D SG CYS 14 DDD CYS 15 1_555 D SG CYS 78 DDD CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf6 D SG CYS 116 DDD CYS 117 1_555 D SG CYS 172 DDD CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A ND2 ASN 77 AAA ASN 78 1_555 G C1 NAG . AbA NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 117 AAA ASN 118 1_555 J C1 NAG . AAA NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale3 B ND2 ASN 18 BBB ASN 19 1_555 H C1 NAG . BaB NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale4 C ND2 ASN 117 CCC ASN 118 1_555 I C1 NAG . CaC NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 E C ILE 6 EEE ILE 6 1_555 E N CIR 7 EEE CIR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 E C CIR 7 EEE CIR 8 1_555 E N ASP 8 EEE ASP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale7 E C VAL 9 EEE VAL 10 1_555 E N CIR 10 EEE CIR 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.26 ? covale ? covale8 E C CIR 10 EEE CIR 11 1_555 E N SER 11 EEE SER 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale9 F C ILE 6 FFF ILE 1173 1_555 F N CIR 7 FFF CIR 1175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.287 ? covale ? covale10 F C CIR 7 FFF CIR 1175 1_555 F N ASP 8 FFF ASP 1176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? covale ? covale11 F O CIR 7 FFF CIR 1175 1_555 F N ASP 8 FFF ASP 1176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 ? covale ? covale12 F C VAL 9 FFF VAL 1177 1_555 F N CIR 10 FFF CIR 1178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.235 ? covale ? covale13 F O VAL 9 FFF VAL 1177 1_555 F N CIR 10 FFF CIR 1178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale14 F C CIR 10 FFF CIR 1178 1_555 F N SER 11 FFF SER 1179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale15 G O4 NAG . AbA NAG 1 1_555 G C1 NAG . AbA NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale16 H O4 NAG . BaB NAG 1 1_555 H C1 NAG . BaB NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale17 I O4 NAG . CaC NAG 1 1_555 I C1 NAG . CaC NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 259 n n C1 O1 NAG sing 260 n n C1 O5 NAG sing 261 n n C1 H1 NAG sing 262 n n C2 C3 NAG sing 263 n n C2 N2 NAG sing 264 n n C2 H2 NAG sing 265 n n C3 C4 NAG sing 266 n n C3 O3 NAG sing 267 n n C3 H3 NAG sing 268 n n C4 C5 NAG sing 269 n n C4 O4 NAG sing 270 n n C4 H4 NAG sing 271 n n C5 C6 NAG sing 272 n n C5 O5 NAG sing 273 n n C5 H5 NAG sing 274 n n C6 O6 NAG sing 275 n n C6 H61 NAG sing 276 n n C6 H62 NAG sing 277 n n C7 C8 NAG sing 278 n n C7 N2 NAG sing 279 n n C7 O7 NAG doub 280 n n C8 H81 NAG sing 281 n n C8 H82 NAG sing 282 n n C8 H83 NAG sing 283 n n N2 HN2 NAG sing 284 n n O1 HO1 NAG sing 285 n n O3 HO3 NAG sing 286 n n O4 HO4 NAG sing 287 n n O6 HO6 NAG sing 288 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7NZH _atom_sites.fract_transf_matrix[1][1] 0.01028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008909 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id J _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id AAA _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 182 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 5 -13.589 -3.847 15.77 1 93.5 0 C1 NAG 201 AAA 1 HETATM 2 C C2 NAG . . . J 5 -13.697 -3.62 17.289 1 94.25 0 C2 NAG 201 AAA 1 HETATM 3 C C3 NAG . . . J 5 -13.919 -2.186 17.751 1 100.52 0 C3 NAG 201 AAA 1 HETATM 4 C C4 NAG . . . J 5 -12.801 -1.34 17.158 1 104.58 0 C4 NAG 201 AAA 1 HETATM 5 C C5 NAG . . . J 5 -12.905 -1.465 15.602 1 102.48 0 C5 NAG 201 AAA 1 HETATM 6 C C6 NAG . . . J 5 -11.743 -0.74 14.931 1 107.62 0 C6 NAG 201 AAA 1 HETATM 7 C C7 NAG . . . J 5 -14.625 -5.072 19.03 1 84.45 0 C7 NAG 201 AAA 1 HETATM 8 C C8 NAG . . . J 5 -15.848 -5.726 19.619 1 84.6 0 C8 NAG 201 AAA 1 HETATM 9 N N2 NAG . . . J 5 -14.756 -4.436 17.915 1 87.06 0 N2 NAG 201 AAA 1 HETATM 10 O O3 NAG . . . J 5 -13.902 -2.109 19.2 1 101.67 0 O3 NAG 201 AAA 1 HETATM 11 O O4 NAG . . . J 5 -12.891 0.02 17.672 1 111.9 0 O4 NAG 201 AAA 1 HETATM 12 O O5 NAG . . . J 5 -12.795 -2.819 15.125 1 98.24 0 O5 NAG 201 AAA 1 HETATM 13 O O6 NAG . . . J 5 -10.517 -1.396 15.272 1 108.63 0 O6 NAG 201 AAA 1 HETATM 14 O O7 NAG . . . J 5 -13.595 -5.109 19.56 1 83.1 0 O7 NAG 201 AAA 1 HETATM 15 H H1 NAG . . . J 5 -14.613 -3.795 15.361 1 92.35 0 H1 NAG 201 AAA 1 HETATM 16 H H2 NAG . . . J 5 -12.718 -3.919 17.702 1 95.21 0 H2 NAG 201 AAA 1 HETATM 17 H H3 NAG . . . J 5 -14.913 -1.85 17.375 1 99.01 0 H3 NAG 201 AAA 1 HETATM 18 H H4 NAG . . . J 5 -11.825 -1.777 17.469 1 105.86 0 H4 NAG 201 AAA 1 HETATM 19 H H5 NAG . . . J 5 -13.868 -1.016 15.261 1 102.12 0 H5 NAG 201 AAA 1 HETATM 20 H H61 NAG . . . J 5 -11.71 0.299 15.267 1 109.56 0 H61 NAG 201 AAA 1 HETATM 21 H H62 NAG . . . J 5 -11.878 -0.746 13.843 1 106.24 0 H62 NAG 201 AAA 1 HETATM 22 H H81 NAG . . . J 5 -15.93 -6.725 19.129 1 82.13 0 H81 NAG 201 AAA 1 HETATM 23 H H82 NAG . . . J 5 -15.778 -5.868 20.678 1 85.26 0 H82 NAG 201 AAA 1 HETATM 24 H H83 NAG . . . J 5 -16.707 -5.113 19.443 1 83.72 0 H83 NAG 201 AAA 1 HETATM 25 H HN2 NAG . . . J 5 -15.712 -4.476 17.219 1 85.63 0 HN2 NAG 201 AAA 1 HETATM 26 H HO3 NAG . . . J 5 -13.842 -1.337 19.726 0 30 0 HO3 NAG 201 AAA 1 HETATM 27 H HO4 NAG . . . J 5 -12.817 0.592 17.038 0 30 0 HO4 NAG 201 AAA 1 HETATM 28 H HO6 NAG . . . J 5 -11.054 -0.51 13.714 0 30 0 HO6 NAG 201 AAA 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #