data_7NZI # _model_server_result.job_id huSRRtOmZPhUbIHky-K5JQ _model_server_result.datetime_utc '2025-02-05 19:05:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7nzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7NZI # _exptl.entry_id 7NZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7NZI _cell.length_a 177.48 _cell.length_b 177.48 _cell.length_c 42.44 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 7NZI _atom_sites.fract_transf_matrix[1][1] 0.005634 _atom_sites.fract_transf_matrix[1][2] 0.003253 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 301 301 SAH SAH . D 3 GOL A 1 302 2 GOL GOL . E 2 SAH B 1 301 301 SAH SAH . F 3 GOL B 1 302 1 GOL GOL . G 4 HOH A 1 401 18 HOH HOH . G 4 HOH A 2 402 16 HOH HOH . G 4 HOH A 3 403 13 HOH HOH . G 4 HOH A 4 404 4 HOH HOH . G 4 HOH A 5 405 1 HOH HOH . G 4 HOH A 6 406 21 HOH HOH . G 4 HOH A 7 407 14 HOH HOH . G 4 HOH A 8 408 20 HOH HOH . H 4 HOH B 1 401 6 HOH HOH . H 4 HOH B 2 402 12 HOH HOH . H 4 HOH B 3 403 8 HOH HOH . H 4 HOH B 4 404 17 HOH HOH . H 4 HOH B 5 405 5 HOH HOH . H 4 HOH B 6 406 19 HOH HOH . H 4 HOH B 7 407 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 2 2.765 65.019 -9.355 1 53.73 ? N SAH 301 B 1 HETATM 2 C CA SAH . . . E 2 2.806 64.409 -10.706 1 54.96 ? CA SAH 301 B 1 HETATM 3 C CB SAH . . . E 2 2.439 62.926 -10.64 1 56.02 ? CB SAH 301 B 1 HETATM 4 C CG SAH . . . E 2 1.236 62.652 -9.774 1 55.39 ? CG SAH 301 B 1 HETATM 5 S SD SAH . . . E 2 0.887 60.899 -9.531 1 55.88 ? SD SAH 301 B 1 HETATM 6 C C SAH . . . E 2 1.816 65.133 -11.613 1 54.84 ? C SAH 301 B 1 HETATM 7 O O SAH . . . E 2 0.981 65.865 -11.072 1 54.34 ? O SAH 301 B 1 HETATM 8 O OXT SAH . . . E 2 1.932 64.941 -12.817 1 55.86 ? OXT SAH 301 B 1 HETATM 9 C C5' SAH . . . E 2 1.48 60.632 -7.848 1 55.39 ? C5' SAH 301 B 1 HETATM 10 C C4' SAH . . . E 2 2.962 60.37 -7.829 1 55.99 ? C4' SAH 301 B 1 HETATM 11 O O4' SAH . . . E 2 3.405 60.323 -6.454 1 55.47 ? O4' SAH 301 B 1 HETATM 12 C C3' SAH . . . E 2 3.371 59.033 -8.448 1 58.29 ? C3' SAH 301 B 1 HETATM 13 O O3' SAH . . . E 2 4.648 59.146 -9.06 1 58.55 ? O3' SAH 301 B 1 HETATM 14 C C2' SAH . . . E 2 3.446 58.128 -7.217 1 58.87 ? C2' SAH 301 B 1 HETATM 15 O O2' SAH . . . E 2 4.252 56.989 -7.412 1 60.47 ? O2' SAH 301 B 1 HETATM 16 C C1' SAH . . . E 2 4.057 59.099 -6.218 1 56.86 ? C1' SAH 301 B 1 HETATM 17 N N9 SAH . . . E 2 3.843 58.738 -4.824 1 56.73 ? N9 SAH 301 B 1 HETATM 18 C C8 SAH . . . E 2 2.719 58.162 -4.291 1 56.78 ? C8 SAH 301 B 1 HETATM 19 N N7 SAH . . . E 2 2.807 57.95 -3.003 1 57.02 ? N7 SAH 301 B 1 HETATM 20 C C5 SAH . . . E 2 4.074 58.404 -2.667 1 57.05 ? C5 SAH 301 B 1 HETATM 21 C C6 SAH . . . E 2 4.767 58.447 -1.445 1 57.35 ? C6 SAH 301 B 1 HETATM 22 N N6 SAH . . . E 2 4.258 58.015 -0.296 1 58.05 ? N6 SAH 301 B 1 HETATM 23 N N1 SAH . . . E 2 6.019 58.961 -1.455 1 57.65 ? N1 SAH 301 B 1 HETATM 24 C C2 SAH . . . E 2 6.522 59.396 -2.616 1 57.48 ? C2 SAH 301 B 1 HETATM 25 N N3 SAH . . . E 2 5.963 59.407 -3.822 1 57.28 ? N3 SAH 301 B 1 HETATM 26 C C4 SAH . . . E 2 4.724 58.892 -3.782 1 57.08 ? C4 SAH 301 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #