data_7O00 # _model_server_result.job_id 6ppgA0-yAGEHAUXWysLs4A _model_server_result.datetime_utc '2024-11-16 08:41:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 7O00 # _exptl.entry_id 7O00 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7O00 _cell.length_a 76.23 _cell.length_b 76.23 _cell.length_c 170.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 AaA 1 NAG AaA 181 NAG 4 n D NAG 2 AaA 2 NAG AbA 182 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 AAA CYS 107 1_555 A SG CYS 160 AAA CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf2 B SG CYS 14 BBB CYS 15 1_555 B SG CYS 78 BBB CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? disulf ? disulf3 B SG CYS 116 BBB CYS 117 1_555 B SG CYS 172 BBB CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 A ND2 ASN 115 AAA ASN 118 1_555 D C1 NAG . AaA NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale2 B ND2 ASN 18 BBB ASN 19 1_555 E C1 NAG . BBB NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 D O4 NAG . AaA NAG 1 1_555 D C1 NAG . AaA NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7O00 _atom_sites.fract_transf_matrix[1][1] 0.013118 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG BBB 1 201 191 NAG NAG . F 6 HOH AAA 1 201 5 HOH HOH . F 6 HOH AAA 2 202 118 HOH HOH . F 6 HOH AAA 3 203 28 HOH HOH . F 6 HOH AAA 4 204 39 HOH HOH . F 6 HOH AAA 5 205 17 HOH HOH . F 6 HOH AAA 6 206 9 HOH HOH . F 6 HOH AAA 7 207 128 HOH HOH . F 6 HOH AAA 8 208 4 HOH HOH . F 6 HOH AAA 9 209 92 HOH HOH . F 6 HOH AAA 10 210 2 HOH HOH . F 6 HOH AAA 11 211 112 HOH HOH . F 6 HOH AAA 12 212 126 HOH HOH . F 6 HOH AAA 13 213 6 HOH HOH . F 6 HOH AAA 14 214 44 HOH HOH . F 6 HOH AAA 15 215 101 HOH HOH . F 6 HOH AAA 16 216 10 HOH HOH . F 6 HOH AAA 17 217 43 HOH HOH . F 6 HOH AAA 18 218 108 HOH HOH . F 6 HOH AAA 19 219 131 HOH HOH . F 6 HOH AAA 20 220 34 HOH HOH . F 6 HOH AAA 21 221 66 HOH HOH . F 6 HOH AAA 22 222 46 HOH HOH . F 6 HOH AAA 23 223 115 HOH HOH . F 6 HOH AAA 24 224 103 HOH HOH . F 6 HOH AAA 25 225 13 HOH HOH . F 6 HOH AAA 26 226 68 HOH HOH . F 6 HOH AAA 27 227 88 HOH HOH . F 6 HOH AAA 28 228 135 HOH HOH . F 6 HOH AAA 29 229 8 HOH HOH . F 6 HOH AAA 30 230 55 HOH HOH . F 6 HOH AAA 31 231 47 HOH HOH . F 6 HOH AAA 32 232 41 HOH HOH . F 6 HOH AAA 33 233 125 HOH HOH . F 6 HOH AAA 34 234 113 HOH HOH . F 6 HOH AAA 35 235 109 HOH HOH . G 6 HOH BBB 1 301 61 HOH HOH . G 6 HOH BBB 2 302 52 HOH HOH . G 6 HOH BBB 3 303 19 HOH HOH . G 6 HOH BBB 4 304 49 HOH HOH . G 6 HOH BBB 5 305 33 HOH HOH . G 6 HOH BBB 6 306 12 HOH HOH . G 6 HOH BBB 7 307 18 HOH HOH . G 6 HOH BBB 8 308 121 HOH HOH . G 6 HOH BBB 9 309 87 HOH HOH . G 6 HOH BBB 10 310 11 HOH HOH . G 6 HOH BBB 11 311 42 HOH HOH . G 6 HOH BBB 12 312 111 HOH HOH . G 6 HOH BBB 13 313 24 HOH HOH . G 6 HOH BBB 14 314 23 HOH HOH . G 6 HOH BBB 15 315 50 HOH HOH . G 6 HOH BBB 16 316 70 HOH HOH . G 6 HOH BBB 17 317 82 HOH HOH . G 6 HOH BBB 18 318 48 HOH HOH . G 6 HOH BBB 19 319 27 HOH HOH . G 6 HOH BBB 20 320 36 HOH HOH . G 6 HOH BBB 21 321 74 HOH HOH . G 6 HOH BBB 22 322 38 HOH HOH . G 6 HOH BBB 23 323 57 HOH HOH . G 6 HOH BBB 24 324 62 HOH HOH . G 6 HOH BBB 25 325 35 HOH HOH . G 6 HOH BBB 26 326 51 HOH HOH . G 6 HOH BBB 27 327 29 HOH HOH . G 6 HOH BBB 28 328 124 HOH HOH . G 6 HOH BBB 29 329 141 HOH HOH . G 6 HOH BBB 30 330 71 HOH HOH . G 6 HOH BBB 31 331 40 HOH HOH . G 6 HOH BBB 32 332 146 HOH HOH . G 6 HOH BBB 33 333 122 HOH HOH . G 6 HOH BBB 34 334 139 HOH HOH . G 6 HOH BBB 35 335 100 HOH HOH . G 6 HOH BBB 36 336 133 HOH HOH . G 6 HOH BBB 37 337 65 HOH HOH . G 6 HOH BBB 38 338 91 HOH HOH . G 6 HOH BBB 39 339 79 HOH HOH . G 6 HOH BBB 40 340 119 HOH HOH . G 6 HOH BBB 41 341 123 HOH HOH . H 6 HOH CCC 1 101 30 HOH HOH . H 6 HOH CCC 2 102 3 HOH HOH . H 6 HOH CCC 3 103 78 HOH HOH . H 6 HOH CCC 4 104 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 -3.38 13.972 7.176 1 104.92 0 C1 NAG 201 BBB 1 HETATM 2 C C2 NAG . . . E 5 -1.969 13.481 6.81 1 109.54 0 C2 NAG 201 BBB 1 HETATM 3 C C3 NAG . . . E 5 -1.762 12.01 7.101 1 113.28 0 C3 NAG 201 BBB 1 HETATM 4 C C4 NAG . . . E 5 -1.997 11.825 8.589 1 115.78 0 C4 NAG 201 BBB 1 HETATM 5 C C5 NAG . . . E 5 -3.467 12.125 8.902 1 115.47 0 C5 NAG 201 BBB 1 HETATM 6 C C6 NAG . . . E 5 -3.67 12.103 10.418 1 117.63 0 C6 NAG 201 BBB 1 HETATM 7 C C7 NAG . . . E 5 -0.631 14.386 4.978 1 107.65 0 C7 NAG 201 BBB 1 HETATM 8 C C8 NAG . . . E 5 -0.587 14.615 3.485 1 102.49 0 C8 NAG 201 BBB 1 HETATM 9 N N2 NAG . . . E 5 -1.706 13.733 5.402 1 110.06 0 N2 NAG 201 BBB 1 HETATM 10 O O3 NAG . . . E 5 -0.438 11.641 6.714 1 114.9 0 O3 NAG 201 BBB 1 HETATM 11 O O4 NAG . . . E 5 -1.635 10.497 8.978 1 118.04 0 O4 NAG 201 BBB 1 HETATM 12 O O5 NAG . . . E 5 -3.937 13.396 8.389 1 110.43 0 O5 NAG 201 BBB 1 HETATM 13 O O6 NAG . . . E 5 -5.057 11.961 10.747 1 117.2 0 O6 NAG 201 BBB 1 HETATM 14 O O7 NAG . . . E 5 0.23 14.764 5.769 1 107.3 0 O7 NAG 201 BBB 1 HETATM 15 H H1 NAG . . . E 5 -4.049 13.71 6.345 1 105.72 0 H1 NAG 201 BBB 1 HETATM 16 H H2 NAG . . . E 5 -1.255 14.049 7.423 1 109.44 0 H2 NAG 201 BBB 1 HETATM 17 H H3 NAG . . . E 5 -2.503 11.423 6.541 1 113.48 0 H3 NAG 201 BBB 1 HETATM 18 H H4 NAG . . . E 5 -1.373 12.545 9.137 1 115.12 0 H4 NAG 201 BBB 1 HETATM 19 H H5 NAG . . . E 5 -4.075 11.319 8.468 1 115.91 0 H5 NAG 201 BBB 1 HETATM 20 H H61 NAG . . . E 5 -3.287 13.03 10.841 1 116.03 0 H61 NAG 201 BBB 1 HETATM 21 H H62 NAG . . . E 5 -3.11 11.277 10.861 1 120.03 0 H62 NAG 201 BBB 1 HETATM 22 H H81 NAG . . . E 5 -1.515 15.01 3.162 1 101.81 0 H81 NAG 201 BBB 1 HETATM 23 H H82 NAG . . . E 5 0.187 15.301 3.256 1 103.34 0 H82 NAG 201 BBB 1 HETATM 24 H H83 NAG . . . E 5 -0.403 13.697 2.992 1 105.46 0 H83 NAG 201 BBB 1 HETATM 25 H HN2 NAG . . . E 5 -2.396 13.423 4.732 1 108.59 0 HN2 NAG 201 BBB 1 HETATM 26 H HO3 NAG . . . E 5 -0.657 9.978 6.896 0 30 0 HO3 NAG 201 BBB 1 HETATM 27 H HO4 NAG . . . E 5 -2.893 9.459 9.368 0 30 0 HO4 NAG 201 BBB 1 HETATM 28 H HO6 NAG . . . E 5 -5.695 11.531 11.312 0 30 0 HO6 NAG 201 BBB 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #