data_7O0N # _model_server_result.job_id Fe4-vXxVAO6fShLy1y-U7Q _model_server_result.datetime_utc '2024-10-30 03:32:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o0n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 7O0N # _exptl.entry_id 7O0N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7O0N _cell.length_a 44.12 _cell.length_b 80.37 _cell.length_c 136.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O0N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 92 A GLU 126 1_555 E MG MG . A MG 303 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 A OE2 GLU 92 A GLU 126 1_555 E MG MG . A MG 303 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc3 A OD1 ASN 93 A ASN 127 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc4 C O3B CDP . A CDP 301 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc5 C O2A CDP . A CDP 301 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc6 D O4P TS6 . A TS6 302 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc7 B OD1 ASN 93 B ASN 127 1_555 K MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc8 I O1P TS6 . B TS6 303 1_555 K MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc9 J O1B CDP . B CDP 304 1_555 K MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc10 J O1A CDP . B CDP 304 1_555 K MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc11 K MG MG . B MG 305 1_555 M O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 157 n n C1 C2 GOL sing 158 n n C1 H11 GOL sing 159 n n C1 H12 GOL sing 160 n n O1 HO1 GOL sing 161 n n C2 O2 GOL sing 162 n n C2 C3 GOL sing 163 n n C2 H2 GOL sing 164 n n O2 HO2 GOL sing 165 n n C3 O3 GOL sing 166 n n C3 H31 GOL sing 167 n n C3 H32 GOL sing 168 n n O3 HO3 GOL sing 169 n n # _atom_sites.entry_id 7O0N _atom_sites.fract_transf_matrix[1][1] 0.022665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CDP A 1 301 301 CDP CDP . D 3 TS6 A 1 302 302 TS6 TS6 . E 4 MG A 1 303 303 MG MG . F 5 PEG A 1 304 304 PEG PEG . G 6 GOL B 1 301 301 GOL GOL . H 6 GOL B 1 302 302 GOL GOL . I 3 TS6 B 1 303 303 TS6 TS6 . J 2 CDP B 1 304 304 CDP CDP . K 4 MG B 1 305 305 MG MG . L 7 HOH A 1 401 401 HOH HOH . L 7 HOH A 2 402 402 HOH HOH . L 7 HOH A 3 403 403 HOH HOH . L 7 HOH A 4 404 404 HOH HOH . L 7 HOH A 5 405 405 HOH HOH . L 7 HOH A 6 406 406 HOH HOH . L 7 HOH A 7 407 407 HOH HOH . L 7 HOH A 8 408 408 HOH HOH . L 7 HOH A 9 409 409 HOH HOH . L 7 HOH A 10 410 410 HOH HOH . L 7 HOH A 11 411 411 HOH HOH . L 7 HOH A 12 412 412 HOH HOH . L 7 HOH A 13 413 413 HOH HOH . L 7 HOH A 14 414 414 HOH HOH . L 7 HOH A 15 415 415 HOH HOH . L 7 HOH A 16 416 416 HOH HOH . L 7 HOH A 17 417 417 HOH HOH . L 7 HOH A 18 418 418 HOH HOH . L 7 HOH A 19 419 419 HOH HOH . L 7 HOH A 20 420 420 HOH HOH . L 7 HOH A 21 421 421 HOH HOH . L 7 HOH A 22 422 422 HOH HOH . L 7 HOH A 23 423 423 HOH HOH . L 7 HOH A 24 424 424 HOH HOH . L 7 HOH A 25 425 425 HOH HOH . L 7 HOH A 26 426 426 HOH HOH . L 7 HOH A 27 427 427 HOH HOH . L 7 HOH A 28 428 428 HOH HOH . L 7 HOH A 29 429 429 HOH HOH . L 7 HOH A 30 430 430 HOH HOH . M 7 HOH B 1 401 401 HOH HOH . M 7 HOH B 2 402 402 HOH HOH . M 7 HOH B 3 403 403 HOH HOH . M 7 HOH B 4 404 404 HOH HOH . M 7 HOH B 5 405 405 HOH HOH . M 7 HOH B 6 406 406 HOH HOH . M 7 HOH B 7 407 407 HOH HOH . M 7 HOH B 8 408 408 HOH HOH . M 7 HOH B 9 409 409 HOH HOH . M 7 HOH B 10 410 410 HOH HOH . M 7 HOH B 11 411 411 HOH HOH . M 7 HOH B 12 412 412 HOH HOH . M 7 HOH B 13 413 413 HOH HOH . M 7 HOH B 14 414 414 HOH HOH . M 7 HOH B 15 415 415 HOH HOH . M 7 HOH B 16 416 416 HOH HOH . M 7 HOH B 17 417 417 HOH HOH . M 7 HOH B 18 418 418 HOH HOH . M 7 HOH B 19 419 419 HOH HOH . M 7 HOH B 20 420 420 HOH HOH . M 7 HOH B 21 421 421 HOH HOH . M 7 HOH B 22 422 422 HOH HOH . M 7 HOH B 23 423 423 HOH HOH . M 7 HOH B 24 424 424 HOH HOH . M 7 HOH B 25 425 425 HOH HOH . M 7 HOH B 26 426 426 HOH HOH . M 7 HOH B 27 427 427 HOH HOH . M 7 HOH B 28 428 428 HOH HOH . M 7 HOH B 29 429 429 HOH HOH . M 7 HOH B 30 430 430 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 6 27.132 32.382 31.877 1 65.87 ? C1 GOL 301 B 1 HETATM 2 O O1 GOL . . . G 6 28.259 33.13 31.432 1 112.93 ? O1 GOL 301 B 1 HETATM 3 C C2 GOL . . . G 6 27.146 32.189 33.379 1 80.04 ? C2 GOL 301 B 1 HETATM 4 O O2 GOL . . . G 6 25.908 31.62 33.804 1 53.2 ? O2 GOL 301 B 1 HETATM 5 C C3 GOL . . . G 6 28.289 31.32 33.857 1 79.15 ? C3 GOL 301 B 1 HETATM 6 O O3 GOL . . . G 6 28.258 31.151 35.272 1 90.8 ? O3 GOL 301 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #