data_7O12
#
_model_server_result.job_id            5XH5KN03iol4TVY3Bn0_aA 
_model_server_result.datetime_utc      '2024-12-22 04:16:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7o12 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":402}' 
#
_entry.id    7O12 
#
_exptl.entry_id    7O12 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7O12 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7O12 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 43 B THR 43 1_555 F MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc2 A OE2 GLU 81 B GLU 81 1_555 F MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc3 F MG MG . B MG 401 1_555 G O2G ANP . B ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc4 F MG MG . B MG 401 1_555 G O3G ANP . B ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc5 F MG MG . B MG 401 1_555 G O2B ANP . B ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc6 B OG1 THR 43 C THR 43 1_555 H MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc7 B OE2 GLU 81 C GLU 81 1_555 H MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc8 H MG MG . C MG 401 1_555 I O2G ANP . C ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc9 H MG MG . C MG 401 1_555 I O3G ANP . C ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc10 H MG MG . C MG 401 1_555 I O2B ANP . C ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc11 C OD1 ASP 359 A ASP 359 1_555 J MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc12 C O ASN 361 A ASN 361 1_555 J MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc13 C OD1 ASN 361 A ASN 361 1_555 J MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc14 C OD1 ASP 363 A ASP 363 1_555 J MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc15 C O LEU 365 A LEU 365 1_555 J MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? 
metalc ? metalc16 C OD1 ASP 367 A ASP 367 1_555 J MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc17 J MG MG . A MG 501 1_555 K O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.734 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     7O12 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 MG B 1 401 3 MG MG . 
G 5 ANP B 1 402 2 ANP ANP . 
H 4 MG C 1 401 2 MG MG . 
I 5 ANP C 1 402 1 ANP ANP . 
J 4 MG A 1 501 1 MG MG . 
K 6 HOH A 1 601 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . I 5 162.628 186.147 162.538 1 176.36 ? PG ANP 402 C 1 
HETATM 2 O O1G ANP . . . I 5 161.308 186.587 162.011 1 176.36 ? O1G ANP 402 C 1 
HETATM 3 O O2G ANP . . . I 5 162.517 184.692 163.115 1 176.36 ? O2G ANP 402 C 1 
HETATM 4 O O3G ANP . . . I 5 163.098 187.127 163.678 1 176.36 ? O3G ANP 402 C 1 
HETATM 5 P PB ANP . . . I 5 165.079 186.903 161.994 1 176.36 ? PB ANP 402 C 1 
HETATM 6 O O1B ANP . . . I 5 164.735 188.274 162.39 1 176.36 ? O1B ANP 402 C 1 
HETATM 7 O O2B ANP . . . I 5 165.417 186.119 163.266 1 176.36 ? O2B ANP 402 C 1 
HETATM 8 N N3B ANP . . . I 5 163.767 186.161 161.304 1 176.36 ? N3B ANP 402 C 1 
HETATM 9 P PA ANP . . . I 5 166.77 185.423 160.833 1 176.36 ? PA ANP 402 C 1 
HETATM 10 O O1A ANP . . . I 5 165.649 184.5 161.086 1 176.36 ? O1A ANP 402 C 1 
HETATM 11 O O2A ANP . . . I 5 167.965 185.318 161.778 1 176.36 ? O2A ANP 402 C 1 
HETATM 12 O O3A ANP . . . I 5 166.253 186.867 161.01 1 176.36 ? O3A ANP 402 C 1 
HETATM 13 O O5' ANP . . . I 5 167.18 185.352 159.32 1 176.36 ? O5' ANP 402 C 1 
HETATM 14 C C5' ANP . . . I 5 167.238 186.565 158.565 1 176.36 ? C5' ANP 402 C 1 
HETATM 15 C C4' ANP . . . I 5 167.426 186.253 157.107 1 176.36 ? C4' ANP 402 C 1 
HETATM 16 O O4' ANP . . . I 5 168.188 185.035 156.966 1 176.36 ? O4' ANP 402 C 1 
HETATM 17 C C3' ANP . . . I 5 166.152 186.076 156.279 1 176.36 ? C3' ANP 402 C 1 
HETATM 18 O O3' ANP . . . I 5 166.233 186.815 155.068 1 176.36 ? O3' ANP 402 C 1 
HETATM 19 C C2' ANP . . . I 5 166.121 184.573 156.004 1 176.36 ? C2' ANP 402 C 1 
HETATM 20 O O2' ANP . . . I 5 165.509 184.258 154.761 1 176.36 ? O2' ANP 402 C 1 
HETATM 21 C C1' ANP . . . I 5 167.607 184.259 155.944 1 176.36 ? C1' ANP 402 C 1 
HETATM 22 N N9 ANP . . . I 5 167.891 182.862 156.207 1 176.36 ? N9 ANP 402 C 1 
HETATM 23 C C8 ANP . . . I 5 167.637 182.168 157.359 1 176.36 ? C8 ANP 402 C 1 
HETATM 24 N N7 ANP . . . I 5 168.005 180.911 157.317 1 176.36 ? N7 ANP 402 C 1 
HETATM 25 C C5 ANP . . . I 5 168.553 180.773 156.053 1 176.36 ? C5 ANP 402 C 1 
HETATM 26 C C6 ANP . . . I 5 169.146 179.684 155.39 1 176.36 ? C6 ANP 402 C 1 
HETATM 27 N N6 ANP . . . I 5 169.273 178.47 155.928 1 176.36 ? N6 ANP 402 C 1 
HETATM 28 N N1 ANP . . . I 5 169.603 179.886 154.132 1 176.36 ? N1 ANP 402 C 1 
HETATM 29 C C2 ANP . . . I 5 169.478 181.1 153.588 1 176.36 ? C2 ANP 402 C 1 
HETATM 30 N N3 ANP . . . I 5 168.944 182.201 154.121 1 176.36 ? N3 ANP 402 C 1 
HETATM 31 C C4 ANP . . . I 5 168.496 181.969 155.361 1 176.36 ? C4 ANP 402 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           31 
#