data_7O1P # _model_server_result.job_id NsJHr_UD5GcJmNIi8psFIg _model_server_result.datetime_utc '2024-11-04 20:33:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7O1P # _exptl.entry_id 7O1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7O1P _cell.length_a 52.45 _cell.length_b 79.16 _cell.length_c 85.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 62 A CYS 63 1_555 B FE2 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc2 A SG CYS 66 A CYS 67 1_555 B FE3 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc3 A SG CYS 69 A CYS 70 1_555 B FE1 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc4 B FE4 SF4 . A SF4 401 1_555 C N SAH . A SAH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc5 B FE4 SF4 . A SF4 401 1_555 C O SAH . A SAH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 383 n n N HN1 SAH sing 384 n n N HN2 SAH sing 385 n n CA CB SAH sing 386 n n CA C SAH sing 387 n n CA HA SAH sing 388 n n CB CG SAH sing 389 n n CB HB1 SAH sing 390 n n CB HB2 SAH sing 391 n n CG SD SAH sing 392 n n CG HG1 SAH sing 393 n n CG HG2 SAH sing 394 n n SD C5' SAH sing 395 n n C O SAH doub 396 n n C OXT SAH sing 397 n n OXT HXT SAH sing 398 n n C5' C4' SAH sing 399 n n C5' "H5'1" SAH sing 400 n n C5' "H5'2" SAH sing 401 n n C4' O4' SAH sing 402 n n C4' C3' SAH sing 403 n n C4' H4' SAH sing 404 n n O4' C1' SAH sing 405 n n C3' O3' SAH sing 406 n n C3' C2' SAH sing 407 n n C3' H3' SAH sing 408 n n O3' HO3' SAH sing 409 n n C2' O2' SAH sing 410 n n C2' C1' SAH sing 411 n n C2' H2' SAH sing 412 n n O2' HO2' SAH sing 413 n n C1' N9 SAH sing 414 n n C1' H1' SAH sing 415 n n N9 C8 SAH sing 416 n y N9 C4 SAH sing 417 n y C8 N7 SAH doub 418 n y C8 H8 SAH sing 419 n n N7 C5 SAH sing 420 n y C5 C6 SAH sing 421 n y C5 C4 SAH doub 422 n y C6 N6 SAH sing 423 n n C6 N1 SAH doub 424 n y N6 HN61 SAH sing 425 n n N6 HN62 SAH sing 426 n n N1 C2 SAH sing 427 n y C2 N3 SAH doub 428 n y C2 H2 SAH sing 429 n n N3 C4 SAH sing 430 n y # _atom_sites.entry_id 7O1P _atom_sites.fract_transf_matrix[1][1] 0.019066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 401 2460 SF4 FS4 . C 3 SAH A 1 402 1501 SAH SAH . D 4 CPS A 1 403 1701 CPS CPS . E 4 CPS A 1 404 1702 CPS CPS . F 4 CPS A 1 405 1703 CPS CPS . G 4 CPS A 1 406 1704 CPS CPS . H 4 CPS A 1 407 1705 CPS CPS . I 5 CO3 A 1 408 4 CO3 CO3 . J 6 CL A 1 409 1 CL CL . K 6 CL A 1 410 2 CL CL . L 6 CL A 1 411 3 CL CL . M 7 HOH A 1 501 5 HOH HOH . M 7 HOH A 2 502 2 HOH HOH . M 7 HOH A 3 503 4 HOH HOH . M 7 HOH A 4 504 1 HOH HOH . M 7 HOH A 5 505 3 HOH HOH . M 7 HOH A 6 506 9 HOH HOH . M 7 HOH A 7 507 6 HOH HOH . M 7 HOH A 8 508 8 HOH HOH . M 7 HOH A 9 509 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 42.362 2.183 20.673 1 61.02 ? N SAH 402 A 1 HETATM 2 C CA SAH . . . C 3 42.011 1.821 19.303 1 61.48 ? CA SAH 402 A 1 HETATM 3 C CB SAH . . . C 3 42.328 2.96 18.33 1 63.25 ? CB SAH 402 A 1 HETATM 4 C CG SAH . . . C 3 43.646 3.712 18.521 1 63.86 ? CG SAH 402 A 1 HETATM 5 S SD SAH . . . C 3 45.145 2.688 18.499 1 65.6 ? SD SAH 402 A 1 HETATM 6 C C SAH . . . C 3 42.733 0.548 18.868 1 60.11 ? C SAH 402 A 1 HETATM 7 O O SAH . . . C 3 43.613 0.048 19.577 1 58.91 ? O SAH 402 A 1 HETATM 8 O OXT SAH . . . C 3 42.456 0.006 17.794 1 61.23 ? OXT SAH 402 A 1 HETATM 9 C C5' SAH . . . C 3 45.466 3.149 16.781 1 65.05 ? C5' SAH 402 A 1 HETATM 10 C C4' SAH . . . C 3 46.692 2.464 16.187 1 65.65 ? C4' SAH 402 A 1 HETATM 11 O O4' SAH . . . C 3 47.904 3.1 16.551 1 65.16 ? O4' SAH 402 A 1 HETATM 12 C C3' SAH . . . C 3 46.837 1.024 16.65 1 66.86 ? C3' SAH 402 A 1 HETATM 13 O O3' SAH . . . C 3 46.182 0.146 15.768 1 67.17 ? O3' SAH 402 A 1 HETATM 14 C C2' SAH . . . C 3 48.333 0.787 16.622 1 66.41 ? C2' SAH 402 A 1 HETATM 15 O O2' SAH . . . C 3 48.693 -0.015 15.525 1 65.6 ? O2' SAH 402 A 1 HETATM 16 C C1' SAH . . . C 3 48.951 2.16 16.428 1 66.41 ? C1' SAH 402 A 1 HETATM 17 N N9 SAH . . . C 3 49.997 2.35 17.447 1 67.25 ? N9 SAH 402 A 1 HETATM 18 C C8 SAH . . . C 3 49.801 2.399 18.801 1 67.13 ? C8 SAH 402 A 1 HETATM 19 N N7 SAH . . . C 3 51.001 2.567 19.402 1 68.73 ? N7 SAH 402 A 1 HETATM 20 C C5 SAH . . . C 3 51.962 2.615 18.452 1 69.53 ? C5 SAH 402 A 1 HETATM 21 C C6 SAH . . . C 3 53.344 2.769 18.522 1 68.71 ? C6 SAH 402 A 1 HETATM 22 N N6 SAH . . . C 3 53.946 2.904 19.703 1 67.44 ? N6 SAH 402 A 1 HETATM 23 N N1 SAH . . . C 3 54.085 2.783 17.358 1 67.96 ? N1 SAH 402 A 1 HETATM 24 C C2 SAH . . . C 3 53.456 2.644 16.137 1 67.39 ? C2 SAH 402 A 1 HETATM 25 N N3 SAH . . . C 3 52.084 2.49 16.076 1 68.21 ? N3 SAH 402 A 1 HETATM 26 C C4 SAH . . . C 3 51.345 2.478 17.214 1 68.1 ? C4 SAH 402 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #