data_7O2R # _model_server_result.job_id HHd4oxYprucPvLntTdO1Wg _model_server_result.datetime_utc '2025-01-10 22:18:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 7O2R # _exptl.entry_id 7O2R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 333.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5-bis(fluoranyl)-~{N}-oxidanyl-4-[(5-pyrimidin-2-yl-1,2,3,4-tetrazol-2-yl)methyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7O2R _cell.length_a 51.966 _cell.length_b 84.212 _cell.length_c 94.977 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 177 A ASP 610 1_555 K K K . A K 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc2 A OD1 ASP 177 A ASP 610 1_555 K K K . A K 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc3 A OD1 ASP 179 A ASP 612 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc4 A OD2 ASP 179 A ASP 612 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc5 A O ASP 179 A ASP 612 1_555 K K K . A K 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc6 A ND1 HIS 181 A HIS 614 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc7 A O HIS 181 A HIS 614 1_555 K K K . A K 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc8 A O PHE 190 A PHE 623 1_555 J K K . A K 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc9 A O ASP 193 A ASP 626 1_555 J K K . A K 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc10 A O VAL 196 A VAL 629 1_555 J K K . A K 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc11 A OG SER 200 A SER 633 1_555 K K K . A K 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc12 A O LEU 201 A LEU 634 1_555 K K K . A K 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc13 A O TYR 229 A TYR 662 1_555 J K K . A K 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc14 A OD2 ASP 272 A ASP 705 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc15 B N1 V05 . A V05 801 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc16 B O2 V05 . A V05 801 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc17 C ZN ZN . A ZN 802 1_555 M O HOH . A HOH 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc18 J K K . A K 809 1_555 M O HOH . A HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc19 J K K . A K 809 1_555 M O HOH . A HOH 947 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? # _chem_comp.formula 'C13 H9 F2 N7 O2' _chem_comp.formula_weight 333.253 _chem_comp.id V05 _chem_comp.mon_nstd_flag . _chem_comp.name 3,5-bis(fluoranyl)-~{N}-oxidanyl-4-[(5-pyrimidin-2-yl-1,2,3,4-tetrazol-2-yl)methyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 N1 V05 sing 374 n n N1 C1 V05 sing 375 n n F2 C12 V05 sing 376 n n C13 C12 V05 doub 377 n y C13 C2 V05 sing 378 n y C1 O1 V05 doub 379 n n C1 C2 V05 sing 380 n n C12 C5 V05 sing 381 n y C2 C3 V05 doub 382 n y C5 C6 V05 sing 383 n n C5 C4 V05 doub 384 n y C3 C4 V05 sing 385 n y C11 N6 V05 doub 386 n y C11 C10 V05 sing 387 n y N6 C8 V05 sing 388 n y C6 N2 V05 sing 389 n n C4 F1 V05 sing 390 n n N7 N2 V05 sing 391 n y N7 C7 V05 doub 392 n y N2 N3 V05 sing 393 n y C10 C9 V05 doub 394 n y C8 C7 V05 sing 395 n n C8 N5 V05 doub 396 n y C7 N4 V05 sing 397 n y N3 N4 V05 doub 398 n y C9 N5 V05 sing 399 n y C6 H1 V05 sing 400 n n C6 H2 V05 sing 401 n n C11 H3 V05 sing 402 n n C9 H4 V05 sing 403 n n C10 H5 V05 sing 404 n n C13 H6 V05 sing 405 n n N1 H7 V05 sing 406 n n C3 H8 V05 sing 407 n n O2 H9 V05 sing 408 n n # _atom_sites.entry_id 7O2R _atom_sites.fract_transf_matrix[1][1] 0.019243 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V05 A 1 801 800 V05 DRG . C 3 ZN A 1 802 810 ZN ZN . D 4 IOD A 1 803 820 IOD IOD . E 4 IOD A 1 804 821 IOD IOD . F 4 IOD A 1 805 822 IOD IOD . G 4 IOD A 1 806 823 IOD IOD . H 4 IOD A 1 807 824 IOD IOD . I 4 IOD A 1 808 825 IOD IOD . J 5 K A 1 809 830 K K . K 5 K A 1 810 831 K K . L 6 PEG A 1 811 840 PEG PEG . M 7 HOH A 1 901 96 HOH HOH . M 7 HOH A 2 902 90 HOH HOH . M 7 HOH A 3 903 44 HOH HOH . M 7 HOH A 4 904 87 HOH HOH . M 7 HOH A 5 905 95 HOH HOH . M 7 HOH A 6 906 64 HOH HOH . M 7 HOH A 7 907 74 HOH HOH . M 7 HOH A 8 908 82 HOH HOH . M 7 HOH A 9 909 75 HOH HOH . M 7 HOH A 10 910 92 HOH HOH . M 7 HOH A 11 911 79 HOH HOH . M 7 HOH A 12 912 24 HOH HOH . M 7 HOH A 13 913 72 HOH HOH . M 7 HOH A 14 914 55 HOH HOH . M 7 HOH A 15 915 49 HOH HOH . M 7 HOH A 16 916 53 HOH HOH . M 7 HOH A 17 917 12 HOH HOH . M 7 HOH A 18 918 10 HOH HOH . M 7 HOH A 19 919 36 HOH HOH . M 7 HOH A 20 920 16 HOH HOH . M 7 HOH A 21 921 4 HOH HOH . M 7 HOH A 22 922 18 HOH HOH . M 7 HOH A 23 923 73 HOH HOH . M 7 HOH A 24 924 65 HOH HOH . M 7 HOH A 25 925 71 HOH HOH . M 7 HOH A 26 926 39 HOH HOH . M 7 HOH A 27 927 51 HOH HOH . M 7 HOH A 28 928 32 HOH HOH . M 7 HOH A 29 929 81 HOH HOH . M 7 HOH A 30 930 22 HOH HOH . M 7 HOH A 31 931 41 HOH HOH . M 7 HOH A 32 932 50 HOH HOH . M 7 HOH A 33 933 1 HOH HOH . M 7 HOH A 34 934 7 HOH HOH . M 7 HOH A 35 935 66 HOH HOH . M 7 HOH A 36 936 85 HOH HOH . M 7 HOH A 37 937 25 HOH HOH . M 7 HOH A 38 938 88 HOH HOH . M 7 HOH A 39 939 48 HOH HOH . M 7 HOH A 40 940 11 HOH HOH . M 7 HOH A 41 941 40 HOH HOH . M 7 HOH A 42 942 43 HOH HOH . M 7 HOH A 43 943 37 HOH HOH . M 7 HOH A 44 944 17 HOH HOH . M 7 HOH A 45 945 34 HOH HOH . M 7 HOH A 46 946 67 HOH HOH . M 7 HOH A 47 947 6 HOH HOH . M 7 HOH A 48 948 19 HOH HOH . M 7 HOH A 49 949 84 HOH HOH . M 7 HOH A 50 950 86 HOH HOH . M 7 HOH A 51 951 47 HOH HOH . M 7 HOH A 52 952 3 HOH HOH . M 7 HOH A 53 953 15 HOH HOH . M 7 HOH A 54 954 70 HOH HOH . M 7 HOH A 55 955 63 HOH HOH . M 7 HOH A 56 956 31 HOH HOH . M 7 HOH A 57 957 69 HOH HOH . M 7 HOH A 58 958 68 HOH HOH . M 7 HOH A 59 959 89 HOH HOH . M 7 HOH A 60 960 8 HOH HOH . M 7 HOH A 61 961 23 HOH HOH . M 7 HOH A 62 962 20 HOH HOH . M 7 HOH A 63 963 93 HOH HOH . M 7 HOH A 64 964 27 HOH HOH . M 7 HOH A 65 965 42 HOH HOH . M 7 HOH A 66 966 2 HOH HOH . M 7 HOH A 67 967 13 HOH HOH . M 7 HOH A 68 968 5 HOH HOH . M 7 HOH A 69 969 45 HOH HOH . M 7 HOH A 70 970 29 HOH HOH . M 7 HOH A 71 971 38 HOH HOH . M 7 HOH A 72 972 9 HOH HOH . M 7 HOH A 73 973 21 HOH HOH . M 7 HOH A 74 974 58 HOH HOH . M 7 HOH A 75 975 28 HOH HOH . M 7 HOH A 76 976 14 HOH HOH . M 7 HOH A 77 977 52 HOH HOH . M 7 HOH A 78 978 77 HOH HOH . M 7 HOH A 79 979 57 HOH HOH . M 7 HOH A 80 980 83 HOH HOH . M 7 HOH A 81 981 33 HOH HOH . M 7 HOH A 82 982 35 HOH HOH . M 7 HOH A 83 983 61 HOH HOH . M 7 HOH A 84 984 78 HOH HOH . M 7 HOH A 85 985 76 HOH HOH . M 7 HOH A 86 986 26 HOH HOH . M 7 HOH A 87 987 54 HOH HOH . M 7 HOH A 88 988 62 HOH HOH . M 7 HOH A 89 989 80 HOH HOH . M 7 HOH A 90 990 46 HOH HOH . M 7 HOH A 91 991 91 HOH HOH . M 7 HOH A 92 992 60 HOH HOH . M 7 HOH A 93 993 97 HOH HOH . M 7 HOH A 94 994 30 HOH HOH . M 7 HOH A 95 995 56 HOH HOH . M 7 HOH A 96 996 59 HOH HOH . M 7 HOH A 97 997 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 V05 . . . B 2 4.1 4.389 29.464 1 43.49 ? C4 V05 801 A 1 HETATM 2 C C5 V05 . . . B 2 4.001 3.211 28.757 1 46.09 ? C5 V05 801 A 1 HETATM 3 C C6 V05 . . . B 2 3.531 1.924 29.397 1 48.46 ? C6 V05 801 A 1 HETATM 4 C C11 V05 . . . B 2 9.029 -1.874 29.309 1 59.61 ? C11 V05 801 A 1 HETATM 5 C C7 V05 . . . B 2 6.356 0.224 30.569 1 58.31 ? C7 V05 801 A 1 HETATM 6 C C8 V05 . . . B 2 7.595 -0.532 30.492 1 55.3 ? C8 V05 801 A 1 HETATM 7 C C9 V05 . . . B 2 9.544 -1.231 31.51 1 60.39 ? C9 V05 801 A 1 HETATM 8 C C10 V05 . . . B 2 9.913 -1.924 30.378 1 57.65 ? C10 V05 801 A 1 HETATM 9 C C12 V05 . . . B 2 4.365 3.265 27.43 1 47.33 ? C12 V05 801 A 1 HETATM 10 C C13 V05 . . . B 2 4.795 4.409 26.823 1 50.48 ? C13 V05 801 A 1 HETATM 11 N N1 V05 . . . B 2 5.653 6.692 25.613 1 46.88 ? N1 V05 801 A 1 HETATM 12 N N2 V05 . . . B 2 4.614 1.257 30.125 1 53.03 ? N2 V05 801 A 1 HETATM 13 C C3 V05 . . . B 2 4.509 5.571 28.902 1 44.31 ? C3 V05 801 A 1 HETATM 14 N N3 V05 . . . B 2 4.725 1.275 31.449 1 62.69 ? N3 V05 801 A 1 HETATM 15 O O1 V05 . . . B 2 5.451 7.93 27.489 1 52.76 ? O1 V05 801 A 1 HETATM 16 C C1 V05 . . . B 2 5.336 6.843 26.889 1 48.93 ? C1 V05 801 A 1 HETATM 17 O O2 V05 . . . B 2 6.103 7.783 24.882 1 54.54 ? O2 V05 801 A 1 HETATM 18 C C2 V05 . . . B 2 4.859 5.593 27.558 1 49.05 ? C2 V05 801 A 1 HETATM 19 F F1 V05 . . . B 2 3.762 4.394 30.771 1 47.46 ? F1 V05 801 A 1 HETATM 20 N N4 V05 . . . B 2 5.829 0.623 31.75 1 58.27 ? N4 V05 801 A 1 HETATM 21 N N5 V05 . . . B 2 8.399 -0.529 31.575 1 57.7 ? N5 V05 801 A 1 HETATM 22 N N6 V05 . . . B 2 7.875 -1.18 29.354 1 53.53 ? N6 V05 801 A 1 HETATM 23 N N7 V05 . . . B 2 5.626 0.633 29.537 1 52.12 ? N7 V05 801 A 1 HETATM 24 F F2 V05 . . . B 2 4.273 2.151 26.677 1 47.27 ? F2 V05 801 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 24 #