data_7O2S # _model_server_result.job_id ZbBmrrFBcBXp83mzWcpgGA _model_server_result.datetime_utc '2025-07-12 01:08:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7O2S # _exptl.entry_id 7O2S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7O2S _cell.length_a 77.814 _cell.length_b 77.814 _cell.length_c 138.248 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 D 1 NAG D 1 NAG 2 n B NAG 2 D 2 NAG D 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 45 1_555 A SG CYS 244 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? covale ? covale1 A ND2 ASN 83 A ASN 74 1_555 B C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 198 A ASN 189 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale3 B O4 NAG . D NAG 1 1_555 B C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? metalc ? metalc1 A OE1 GLU 48 A GLU 39 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A OD1 ASP 67 A ASP 58 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc3 A NE2 HIS 97 A HIS 88 1_555 H ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc4 A NE2 HIS 126 A HIS 117 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc5 A NE2 HIS 128 A HIS 119 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc6 A ND1 HIS 151 A HIS 142 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc7 A OE1 GLU 184 A GLU 175 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc8 A OE2 GLU 184 A GLU 175 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc9 D ZN ZN . A ZN 402 1_555 J O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc10 D ZN ZN . A ZN 402 1_555 J O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc11 E ZN ZN . A ZN 403 1_555 J O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc12 E ZN ZN . A ZN 403 1_555 J O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc13 G ZN ZN . A ZN 405 1_555 J O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc14 G ZN ZN . A ZN 405 1_555 J O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7O2S _atom_sites.fract_transf_matrix[1][1] 0.012851 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012851 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 401 3 NAG NAG . D 4 ZN A 1 402 1 ZN ZN . E 4 ZN A 1 403 2 ZN ZN . F 4 ZN A 1 404 3 ZN ZN . G 4 ZN A 1 405 4 ZN ZN . H 4 ZN A 1 406 5 ZN ZN . I 4 ZN A 1 407 6 ZN ZN . J 5 HOH A 1 501 27 HOH HOH . J 5 HOH A 2 502 23 HOH HOH . J 5 HOH A 3 503 5 HOH HOH . J 5 HOH A 4 504 8 HOH HOH . J 5 HOH A 5 505 3 HOH HOH . J 5 HOH A 6 506 1 HOH HOH . J 5 HOH A 7 507 16 HOH HOH . J 5 HOH A 8 508 28 HOH HOH . J 5 HOH A 9 509 2 HOH HOH . J 5 HOH A 10 510 7 HOH HOH . J 5 HOH A 11 511 6 HOH HOH . J 5 HOH A 12 512 18 HOH HOH . J 5 HOH A 13 513 25 HOH HOH . J 5 HOH A 14 514 35 HOH HOH . J 5 HOH A 15 515 17 HOH HOH . J 5 HOH A 16 516 9 HOH HOH . J 5 HOH A 17 517 11 HOH HOH . J 5 HOH A 18 518 14 HOH HOH . J 5 HOH A 19 519 4 HOH HOH . J 5 HOH A 20 520 26 HOH HOH . J 5 HOH A 21 521 12 HOH HOH . J 5 HOH A 22 522 13 HOH HOH . J 5 HOH A 23 523 15 HOH HOH . J 5 HOH A 24 524 10 HOH HOH . J 5 HOH A 25 525 24 HOH HOH . J 5 HOH A 26 526 29 HOH HOH . J 5 HOH A 27 527 20 HOH HOH . J 5 HOH A 28 528 19 HOH HOH . J 5 HOH A 29 529 31 HOH HOH . J 5 HOH A 30 530 30 HOH HOH . J 5 HOH A 31 531 36 HOH HOH . J 5 HOH A 32 532 22 HOH HOH . J 5 HOH A 33 533 32 HOH HOH . J 5 HOH A 34 534 33 HOH HOH . J 5 HOH A 35 535 21 HOH HOH . J 5 HOH A 36 536 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 26.171 10.597 -4.457 1 116.5 ? C1 NAG 401 A 1 HETATM 2 C C2 NAG . . . C 3 26.977 11.601 -3.625 1 111.6 ? C2 NAG 401 A 1 HETATM 3 C C3 NAG . . . C 3 26.627 11.506 -2.137 1 113.59 ? C3 NAG 401 A 1 HETATM 4 C C4 NAG . . . C 3 25.131 11.266 -1.875 1 113.76 ? C4 NAG 401 A 1 HETATM 5 C C5 NAG . . . C 3 24.49 10.245 -2.841 1 113.14 ? C5 NAG 401 A 1 HETATM 6 C C6 NAG . . . C 3 22.989 10.002 -2.602 1 97.3 ? C6 NAG 401 A 1 HETATM 7 C C7 NAG . . . C 3 29.194 12.059 -4.72 1 94.51 ? C7 NAG 401 A 1 HETATM 8 C C8 NAG . . . C 3 28.585 13.066 -5.67 1 87.24 ? C8 NAG 401 A 1 HETATM 9 N N2 NAG . . . C 3 28.411 11.392 -3.84 1 95.08 ? N2 NAG 401 A 1 HETATM 10 O O4 NAG . . . C 3 24.983 10.827 -0.517 1 115.19 ? O4 NAG 401 A 1 HETATM 11 O O5 NAG . . . C 3 24.761 10.644 -4.194 1 121.68 ? O5 NAG 401 A 1 HETATM 12 O O6 NAG . . . C 3 22.267 9.804 -3.829 1 96.73 ? O6 NAG 401 A 1 HETATM 13 O O7 NAG . . . C 3 30.398 11.852 -4.765 1 92.69 ? O7 NAG 401 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 13 #