data_7O2V # _model_server_result.job_id xU8vDp77ma2-ijiPVi6Kzg _model_server_result.datetime_utc '2024-12-23 06:48:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o2v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7O2V # _exptl.entry_id 7O2V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 620.605 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[[3,4-bis(fluoranyl)phenyl]methyl]-~{N}-[(1~{R})-2-[[(3~{E})-3-(1~{H}-imidazol-5-ylmethylidene)-2-oxidanylidene-1~{H}-indol-5-yl]amino]-2-oxidanylidene-1-phenyl-ethyl]-6-methyl-2-oxidanylidene-pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7O2V _cell.length_a 82.129 _cell.length_b 82.129 _cell.length_c 166.292 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H26 F2 N6 O4' _chem_comp.formula_weight 620.605 _chem_comp.id V0K _chem_comp.mon_nstd_flag . _chem_comp.name 1-[[3,4-bis(fluoranyl)phenyl]methyl]-~{N}-[(1~{R})-2-[[(3~{E})-3-(1~{H}-imidazol-5-ylmethylidene)-2-oxidanylidene-1~{H}-indol-5-yl]amino]-2-oxidanylidene-1-phenyl-ethyl]-6-methyl-2-oxidanylidene-pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 N24 V0K doub 358 n y C25 N26 V0K sing 359 n y F43 C42 V0K sing 360 n n N24 C23 V0K sing 361 n y F45 C44 V0K sing 362 n n N26 C22 V0K sing 363 n y C42 C44 V0K doub 364 n y C42 C41 V0K sing 365 n y C44 C46 V0K sing 366 n y C23 C22 V0K doub 367 n y C22 C21 V0K sing 368 n n C41 C40 V0K doub 369 n y C46 C39 V0K doub 370 n y C01 C02 V0K sing 371 n n C03 C02 V0K doub 372 n n C03 C04 V0K sing 373 n n C21 C20 V0K doub 374 e n C02 N37 V0K sing 375 n n C40 C39 V0K sing 376 n y C39 C38 V0K sing 377 n n C04 C05 V0K doub 378 n n C33 C34 V0K doub 379 n y C33 C32 V0K sing 380 n y N37 C38 V0K sing 381 n n N37 C35 V0K sing 382 n n C20 C18 V0K sing 383 n n C20 C27 V0K sing 384 n n O19 C18 V0K doub 385 n n C34 C29 V0K sing 386 n y C05 C35 V0K sing 387 n n C05 C06 V0K sing 388 n n C32 C31 V0K doub 389 n y C35 O36 V0K doub 390 n n C18 N17 V0K sing 391 n n O11 C10 V0K doub 392 n n C06 O07 V0K doub 393 n n C06 N08 V0K sing 394 n n C27 C28 V0K doub 395 n y C27 C16 V0K sing 396 n y N08 C09 V0K sing 397 n n C28 C13 V0K sing 398 n y C29 C09 V0K sing 399 n n C29 C30 V0K doub 400 n y C31 C30 V0K sing 401 n y C10 C09 V0K sing 402 n n C10 N12 V0K sing 403 n n N17 C16 V0K sing 404 n n C16 C15 V0K doub 405 n y C13 N12 V0K sing 406 n n C13 C14 V0K doub 407 n y C15 C14 V0K sing 408 n y C01 H012 V0K sing 409 n n C01 H013 V0K sing 410 n n C01 H011 V0K sing 411 n n C03 H031 V0K sing 412 n n C04 H041 V0K sing 413 n n C09 H091 V0K sing 414 n n C14 H141 V0K sing 415 n n C15 H151 V0K sing 416 n n C21 H211 V0K sing 417 n n C23 H231 V0K sing 418 n n C25 H251 V0K sing 419 n n C28 H281 V0K sing 420 n n C30 H301 V0K sing 421 n n C31 H311 V0K sing 422 n n C32 H321 V0K sing 423 n n C33 H331 V0K sing 424 n n C34 H341 V0K sing 425 n n C38 H381 V0K sing 426 n n C38 H382 V0K sing 427 n n C40 H401 V0K sing 428 n n C41 H411 V0K sing 429 n n C46 H461 V0K sing 430 n n N08 H081 V0K sing 431 n n N12 H121 V0K sing 432 n n N17 H171 V0K sing 433 n n N26 H261 V0K sing 434 n n # _atom_sites.entry_id 7O2V _atom_sites.fract_transf_matrix[1][1] 0.012176 _atom_sites.fract_transf_matrix[1][2] 0.00703 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V0K A 1 501 501 V0K VI8 . C 3 HOH A 1 601 8 HOH HOH . C 3 HOH A 2 602 12 HOH HOH . C 3 HOH A 3 603 6 HOH HOH . C 3 HOH A 4 604 16 HOH HOH . C 3 HOH A 5 605 18 HOH HOH . C 3 HOH A 6 606 5 HOH HOH . C 3 HOH A 7 607 10 HOH HOH . C 3 HOH A 8 608 14 HOH HOH . C 3 HOH A 9 609 19 HOH HOH . C 3 HOH A 10 610 7 HOH HOH . C 3 HOH A 11 611 13 HOH HOH . C 3 HOH A 12 612 2 HOH HOH . C 3 HOH A 13 613 11 HOH HOH . C 3 HOH A 14 614 9 HOH HOH . C 3 HOH A 15 615 4 HOH HOH . C 3 HOH A 16 616 3 HOH HOH . C 3 HOH A 17 617 15 HOH HOH . C 3 HOH A 18 618 1 HOH HOH . C 3 HOH A 19 619 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 V0K . . . B 2 -15.509 -26.151 2.686 1 157.97 ? C01 V0K 501 A 1 HETATM 2 C C02 V0K . . . B 2 -14.134 -26.215 3.382 1 168.14 ? C02 V0K 501 A 1 HETATM 3 C C03 V0K . . . B 2 -13.159 -27.19 3.108 1 152.24 ? C03 V0K 501 A 1 HETATM 4 C C04 V0K . . . B 2 -11.872 -27.215 3.79 1 143.73 ? C04 V0K 501 A 1 HETATM 5 C C05 V0K . . . B 2 -11.545 -26.297 4.762 1 165.37 ? C05 V0K 501 A 1 HETATM 6 C C06 V0K . . . B 2 -10.159 -26.257 5.482 1 157.76 ? C06 V0K 501 A 1 HETATM 7 C C09 V0K . . . B 2 -7.955 -27.285 6.6 1 148.24 ? C09 V0K 501 A 1 HETATM 8 C C10 V0K . . . B 2 -6.854 -28.503 6.319 1 130.96 ? C10 V0K 501 A 1 HETATM 9 C C13 V0K . . . B 2 -4.959 -30.145 7.254 1 114.37 ? C13 V0K 501 A 1 HETATM 10 C C14 V0K . . . B 2 -4.211 -30.638 8.36 1 97.8 ? C14 V0K 501 A 1 HETATM 11 C C15 V0K . . . B 2 -3.251 -31.681 8.214 1 98.03 ? C15 V0K 501 A 1 HETATM 12 C C16 V0K . . . B 2 -3.005 -32.281 6.946 1 106.63 ? C16 V0K 501 A 1 HETATM 13 C C18 V0K . . . B 2 -2.202 -33.603 5.164 1 101.84 ? C18 V0K 501 A 1 HETATM 14 C C20 V0K . . . B 2 -3.254 -32.67 4.571 1 118.06 ? C20 V0K 501 A 1 HETATM 15 C C21 V0K . . . B 2 -3.48 -32.789 3.204 1 129.14 ? C21 V0K 501 A 1 HETATM 16 C C22 V0K . . . B 2 -4.404 -32.141 2.221 1 134.3 ? C22 V0K 501 A 1 HETATM 17 C C23 V0K . . . B 2 -4.735 -30.83 1.807 1 127 ? C23 V0K 501 A 1 HETATM 18 C C25 V0K . . . B 2 -5.988 -32.132 0.527 1 125.94 ? C25 V0K 501 A 1 HETATM 19 C C27 V0K . . . B 2 -3.73 -31.842 5.776 1 114.03 ? C27 V0K 501 A 1 HETATM 20 C C28 V0K . . . B 2 -4.676 -30.795 5.995 1 116 ? C28 V0K 501 A 1 HETATM 21 C C29 V0K . . . B 2 -7.372 -25.953 6.047 1 151.74 ? C29 V0K 501 A 1 HETATM 22 C C30 V0K . . . B 2 -7.172 -24.747 6.779 1 149.96 ? C30 V0K 501 A 1 HETATM 23 C C31 V0K . . . B 2 -6.673 -23.578 6.145 1 145.84 ? C31 V0K 501 A 1 HETATM 24 C C32 V0K . . . B 2 -6.388 -23.579 4.764 1 145.97 ? C32 V0K 501 A 1 HETATM 25 C C33 V0K . . . B 2 -6.604 -24.751 4.021 1 145.27 ? C33 V0K 501 A 1 HETATM 26 C C34 V0K . . . B 2 -7.097 -25.909 4.658 1 147.12 ? C34 V0K 501 A 1 HETATM 27 C C35 V0K . . . B 2 -12.558 -25.21 5.065 1 174.11 ? C35 V0K 501 A 1 HETATM 28 C C38 V0K . . . B 2 -14.923 -24.13 4.643 1 167.76 ? C38 V0K 501 A 1 HETATM 29 C C39 V0K . . . B 2 -14.886 -23.008 3.545 1 174.35 ? C39 V0K 501 A 1 HETATM 30 C C40 V0K . . . B 2 -13.788 -22.112 3.411 1 177.63 ? C40 V0K 501 A 1 HETATM 31 C C41 V0K . . . B 2 -13.754 -21.113 2.416 1 177.23 ? C41 V0K 501 A 1 HETATM 32 C C42 V0K . . . B 2 -14.837 -20.994 1.524 1 177 ? C42 V0K 501 A 1 HETATM 33 C C44 V0K . . . B 2 -15.939 -21.88 1.637 1 170.95 ? C44 V0K 501 A 1 HETATM 34 C C46 V0K . . . B 2 -15.957 -22.871 2.639 1 170.79 ? C46 V0K 501 A 1 HETATM 35 F F43 V0K . . . B 2 -14.832 -20.054 0.573 1 170.31 ? F43 V0K 501 A 1 HETATM 36 F F45 V0K . . . B 2 -16.966 -21.768 0.79 1 156.47 ? F45 V0K 501 A 1 HETATM 37 N N08 V0K . . . B 2 -9.361 -27.402 5.953 1 147.39 ? N08 V0K 501 A 1 HETATM 38 N N12 V0K . . . B 2 -5.994 -29.045 7.36 1 117.8 ? N12 V0K 501 A 1 HETATM 39 N N17 V0K . . . B 2 -2.099 -33.332 6.564 1 100.62 ? N17 V0K 501 A 1 HETATM 40 N N24 V0K . . . B 2 -5.698 -30.83 0.783 1 129.93 ? N24 V0K 501 A 1 HETATM 41 N N26 V0K . . . B 2 -5.226 -32.941 1.368 1 124.1 ? N26 V0K 501 A 1 HETATM 42 N N37 V0K . . . B 2 -13.868 -25.217 4.359 1 174.03 ? N37 V0K 501 A 1 HETATM 43 O O07 V0K . . . B 2 -9.713 -25.121 5.592 1 163.51 ? O07 V0K 501 A 1 HETATM 44 O O11 V0K . . . B 2 -6.787 -28.934 5.179 1 139.72 ? O11 V0K 501 A 1 HETATM 45 O O19 V0K . . . B 2 -1.532 -34.458 4.589 1 97.88 ? O19 V0K 501 A 1 HETATM 46 O O36 V0K . . . B 2 -12.41 -24.303 5.891 1 170.31 ? O36 V0K 501 A 1 HETATM 47 H H012 V0K . . . B 2 -15.704 -26.892 2.142 1 189.45 ? H012 V0K 501 A 1 HETATM 48 H H013 V0K . . . B 2 -15.623 -25.413 2.117 1 189.45 ? H013 V0K 501 A 1 HETATM 49 H H011 V0K . . . B 2 -16.24 -26.101 3.274 1 189.45 ? H011 V0K 501 A 1 HETATM 50 H H031 V0K . . . B 2 -13.34 -27.842 2.471 1 182.58 ? H031 V0K 501 A 1 HETATM 51 H H041 V0K . . . B 2 -11.251 -27.869 3.564 1 172.36 ? H041 V0K 501 A 1 HETATM 52 H H091 V0K . . . B 2 -8.062 -27.395 7.527 1 177.77 ? H091 V0K 501 A 1 HETATM 53 H H141 V0K . . . B 2 -4.367 -30.257 9.193 1 117.25 ? H141 V0K 501 A 1 HETATM 54 H H151 V0K . . . B 2 -2.787 -31.96 8.969 1 117.52 ? H151 V0K 501 A 1 HETATM 55 H H211 V0K . . . B 2 -2.943 -33.414 2.772 1 154.86 ? H211 V0K 501 A 1 HETATM 56 H H231 V0K . . . B 2 -4.409 -30.017 2.117 1 152.29 ? H231 V0K 501 A 1 HETATM 57 H H251 V0K . . . B 2 -6.59 -32.459 -0.1 1 151.02 ? H251 V0K 501 A 1 HETATM 58 H H281 V0K . . . B 2 -5.167 -30.489 5.268 1 139.09 ? H281 V0K 501 A 1 HETATM 59 H H301 V0K . . . B 2 -7.368 -24.712 7.687 1 179.84 ? H301 V0K 501 A 1 HETATM 60 H H311 V0K . . . B 2 -6.531 -22.802 6.635 1 174.89 ? H311 V0K 501 A 1 HETATM 61 H H321 V0K . . . B 2 -6.061 -22.82 4.341 1 175.05 ? H321 V0K 501 A 1 HETATM 62 H H331 V0K . . . B 2 -6.418 -24.754 3.111 1 174.21 ? H331 V0K 501 A 1 HETATM 63 H H341 V0K . . . B 2 -7.248 -26.669 4.145 1 176.43 ? H341 V0K 501 A 1 HETATM 64 H H381 V0K . . . B 2 -15.772 -24.522 4.725 1 201.2 ? H381 V0K 501 A 1 HETATM 65 H H382 V0K . . . B 2 -14.803 -23.787 5.509 1 201.2 ? H382 V0K 501 A 1 HETATM 66 H H401 V0K . . . B 2 -13.056 -22.163 3.982 1 213.04 ? H401 V0K 501 A 1 HETATM 67 H H411 V0K . . . B 2 -13.034 -20.532 2.338 1 212.57 ? H411 V0K 501 A 1 HETATM 68 H H461 V0K . . . B 2 -16.692 -23.436 2.69 1 204.84 ? H461 V0K 501 A 1 HETATM 69 H H081 V0K . . . B 2 -9.684 -28.203 5.871 1 176.76 ? H081 V0K 501 A 1 HETATM 70 H H121 V0K . . . B 2 -6.094 -28.684 8.143 1 141.25 ? H121 V0K 501 A 1 HETATM 71 H H171 V0K . . . B 2 -1.548 -33.769 7.073 1 120.63 ? H171 V0K 501 A 1 HETATM 72 H H261 V0K . . . B 2 -5.262 -33.808 1.358 1 148.82 ? H261 V0K 501 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 72 #