data_7O2X # _model_server_result.job_id 2VuqFixKfZrGAFWtIwoMag _model_server_result.datetime_utc '2024-11-13 21:02:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7O2X # _exptl.entry_id 7O2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 333.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(6-methylimidazo[1,2-a]pyridin-2-yl)methyl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7O2X _cell.length_a 63.95 _cell.length_b 63.95 _cell.length_c 225.72 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 233 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 338 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 283 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 388 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.032 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H15 N5 O2' _chem_comp.formula_weight 333.344 _chem_comp.id V0B _chem_comp.mon_nstd_flag . _chem_comp.name N-[(6-methylimidazo[1,2-a]pyridin-2-yl)methyl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ~{N}-[(6-methylimidazo[1,2-a]pyridin-2-yl)methyl]-4-oxidanylidene-pyrido[1,2-a]pyrimidine-2-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 V0B sing 364 n n C03 C02 V0B sing 365 n y C03 C04 V0B doub 366 n y C19 C20 V0B doub 367 n n C19 C18 V0B sing 368 n n C02 C25 V0B doub 369 n y C04 C05 V0B sing 370 n y C20 C21 V0B sing 371 n n C18 C17 V0B doub 372 n n C25 N24 V0B sing 373 n y C05 N24 V0B sing 374 n y C05 N06 V0B doub 375 n y C17 N16 V0B sing 376 n n C21 N22 V0B doub 377 n n C21 N16 V0B sing 378 n n N24 C23 V0B sing 379 n y N06 C07 V0B sing 380 n y N22 C12 V0B sing 381 n n N16 C14 V0B sing 382 n n C23 C07 V0B doub 383 n y C07 C08 V0B sing 384 n n N09 C08 V0B sing 385 n n N09 C10 V0B sing 386 n n C12 C10 V0B sing 387 n n C12 C13 V0B doub 388 n n C14 O15 V0B doub 389 n n C14 C13 V0B sing 390 n n C10 O11 V0B doub 391 n n C13 H1 V0B sing 392 n n C17 H3 V0B sing 393 n n C20 H4 V0B sing 394 n n C01 H5 V0B sing 395 n n C01 H6 V0B sing 396 n n C01 H7 V0B sing 397 n n C03 H8 V0B sing 398 n n C04 H9 V0B sing 399 n n C08 H10 V0B sing 400 n n C08 H11 V0B sing 401 n n C18 H12 V0B sing 402 n n C19 H13 V0B sing 403 n n C23 H14 V0B sing 404 n n C25 H15 V0B sing 405 n n N09 H16 V0B sing 406 n n # _atom_sites.entry_id 7O2X _atom_sites.fract_transf_matrix[1][1] 0.015637 _atom_sites.fract_transf_matrix[1][2] 0.009028 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V0B A 1 601 1 V0B LIG . D 4 ACT B 1 401 2 ACT ACT . E 5 HOH A 1 701 7 HOH HOH . E 5 HOH A 2 702 18 HOH HOH . E 5 HOH A 3 703 23 HOH HOH . E 5 HOH A 4 704 4 HOH HOH . E 5 HOH A 5 705 34 HOH HOH . E 5 HOH A 6 706 3 HOH HOH . E 5 HOH A 7 707 24 HOH HOH . E 5 HOH A 8 708 19 HOH HOH . E 5 HOH A 9 709 10 HOH HOH . E 5 HOH A 10 710 25 HOH HOH . E 5 HOH A 11 711 11 HOH HOH . F 5 HOH B 1 501 6 HOH HOH . F 5 HOH B 2 502 13 HOH HOH . F 5 HOH B 3 503 1 HOH HOH . F 5 HOH B 4 504 32 HOH HOH . F 5 HOH B 5 505 9 HOH HOH . F 5 HOH B 6 506 2 HOH HOH . F 5 HOH B 7 507 20 HOH HOH . F 5 HOH B 8 508 5 HOH HOH . F 5 HOH B 9 509 8 HOH HOH . F 5 HOH B 10 510 31 HOH HOH . F 5 HOH B 11 511 17 HOH HOH . F 5 HOH B 12 512 22 HOH HOH . F 5 HOH B 13 513 12 HOH HOH . F 5 HOH B 14 514 27 HOH HOH . F 5 HOH B 15 515 33 HOH HOH . F 5 HOH B 16 516 21 HOH HOH . F 5 HOH B 17 517 14 HOH HOH . F 5 HOH B 18 518 15 HOH HOH . F 5 HOH B 19 519 26 HOH HOH . F 5 HOH B 20 520 28 HOH HOH . F 5 HOH B 21 521 30 HOH HOH . F 5 HOH B 22 522 29 HOH HOH . F 5 HOH B 23 523 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 V0B . . . C 3 -41.552 36.898 27.012 1 33.14 ? C10 V0B 601 A 1 HETATM 2 C C13 V0B . . . C 3 -40.047 38.988 27.081 1 37.11 ? C13 V0B 601 A 1 HETATM 3 C C17 V0B . . . C 3 -39.559 41.818 24.359 1 41.3 ? C17 V0B 601 A 1 HETATM 4 C C20 V0B . . . C 3 -41.573 40.014 22.951 1 36.07 ? C20 V0B 601 A 1 HETATM 5 C C21 V0B . . . C 3 -41.023 39.692 24.364 1 37.63 ? C21 V0B 601 A 1 HETATM 6 C C01 V0B . . . C 3 -42.978 29.14 21.758 1 45.24 ? C01 V0B 601 A 1 HETATM 7 C C02 V0B . . . C 3 -43.38 30.425 22.481 1 43.93 ? C02 V0B 601 A 1 HETATM 8 C C03 V0B . . . C 3 -44.494 31.231 21.97 1 51.31 ? C03 V0B 601 A 1 HETATM 9 C C04 V0B . . . C 3 -44.885 32.476 22.664 1 46.4 ? C04 V0B 601 A 1 HETATM 10 C C05 V0B . . . C 3 -44.088 32.912 23.958 1 46.21 ? C05 V0B 601 A 1 HETATM 11 C C07 V0B . . . C 3 -43.301 33.895 25.746 1 43.52 ? C07 V0B 601 A 1 HETATM 12 C C08 V0B . . . C 3 -43.105 34.886 26.874 1 36.6 ? C08 V0B 601 A 1 HETATM 13 C C12 V0B . . . C 3 -41.014 38.125 26.353 1 31.09 ? C12 V0B 601 A 1 HETATM 14 C C14 V0B . . . C 3 -39.546 40.222 26.417 1 39.2 ? C14 V0B 601 A 1 HETATM 15 C C18 V0B . . . C 3 -40.09 42.163 22.963 1 36.1 ? C18 V0B 601 A 1 HETATM 16 C C19 V0B . . . C 3 -41.086 41.258 22.282 1 39.82 ? C19 V0B 601 A 1 HETATM 17 C C23 V0B . . . C 3 -42.548 32.741 25.53 1 43.41 ? C23 V0B 601 A 1 HETATM 18 C C25 V0B . . . C 3 -42.629 30.847 23.714 1 40.43 ? C25 V0B 601 A 1 HETATM 19 N N06 V0B . . . C 3 -44.23 33.995 24.783 1 48.19 ? N06 V0B 601 A 1 HETATM 20 N N09 V0B . . . C 3 -42.509 36.068 26.292 1 35.93 ? N09 V0B 601 A 1 HETATM 21 N N16 V0B . . . C 3 -40.04 40.567 25.063 1 37.76 ? N16 V0B 601 A 1 HETATM 22 N N22 V0B . . . C 3 -41.51 38.463 25.046 1 34.18 ? N22 V0B 601 A 1 HETATM 23 N N24 V0B . . . C 3 -43.038 32.138 24.437 1 44.13 ? N24 V0B 601 A 1 HETATM 24 O O11 V0B . . . C 3 -41.212 36.701 28.114 1 36.04 ? O11 V0B 601 A 1 HETATM 25 O O15 V0B . . . C 3 -38.749 40.902 26.99 1 40.83 ? O15 V0B 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #