data_7O2Y # _model_server_result.job_id 3vlkI6d3Sq2oLD6zyqoCeQ _model_server_result.datetime_utc '2024-11-07 22:08:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o2y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7O2Y # _exptl.entry_id 7O2Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7O2Y _cell.length_a 38.466 _cell.length_b 38.466 _cell.length_c 117.601 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O2Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 AAA CYS 27 1_555 A SG CYS 113 AAA CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 41 AAA CYS 60 1_555 A SG CYS 165 AAA CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 7O2Y _atom_sites.fract_transf_matrix[1][1] 0.025997 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025997 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BLA AAA 1 301 201 BLA BLA . C 3 HOH AAA 1 401 20 HOH HOH . C 3 HOH AAA 2 402 68 HOH HOH . C 3 HOH AAA 3 403 71 HOH HOH . C 3 HOH AAA 4 404 56 HOH HOH . C 3 HOH AAA 5 405 4 HOH HOH . C 3 HOH AAA 6 406 60 HOH HOH . C 3 HOH AAA 7 407 22 HOH HOH . C 3 HOH AAA 8 408 19 HOH HOH . C 3 HOH AAA 9 409 63 HOH HOH . C 3 HOH AAA 10 410 26 HOH HOH . C 3 HOH AAA 11 411 1 HOH HOH . C 3 HOH AAA 12 412 48 HOH HOH . C 3 HOH AAA 13 413 29 HOH HOH . C 3 HOH AAA 14 414 55 HOH HOH . C 3 HOH AAA 15 415 35 HOH HOH . C 3 HOH AAA 16 416 18 HOH HOH . C 3 HOH AAA 17 417 37 HOH HOH . C 3 HOH AAA 18 418 21 HOH HOH . C 3 HOH AAA 19 419 53 HOH HOH . C 3 HOH AAA 20 420 24 HOH HOH . C 3 HOH AAA 21 421 52 HOH HOH . C 3 HOH AAA 22 422 70 HOH HOH . C 3 HOH AAA 23 423 33 HOH HOH . C 3 HOH AAA 24 424 54 HOH HOH . C 3 HOH AAA 25 425 11 HOH HOH . C 3 HOH AAA 26 426 27 HOH HOH . C 3 HOH AAA 27 427 41 HOH HOH . C 3 HOH AAA 28 428 49 HOH HOH . C 3 HOH AAA 29 429 61 HOH HOH . C 3 HOH AAA 30 430 31 HOH HOH . C 3 HOH AAA 31 431 50 HOH HOH . C 3 HOH AAA 32 432 23 HOH HOH . C 3 HOH AAA 33 433 67 HOH HOH . C 3 HOH AAA 34 434 59 HOH HOH . C 3 HOH AAA 35 435 34 HOH HOH . C 3 HOH AAA 36 436 3 HOH HOH . C 3 HOH AAA 37 437 51 HOH HOH . C 3 HOH AAA 38 438 28 HOH HOH . C 3 HOH AAA 39 439 62 HOH HOH . C 3 HOH AAA 40 440 38 HOH HOH . C 3 HOH AAA 41 441 69 HOH HOH . C 3 HOH AAA 42 442 65 HOH HOH . C 3 HOH AAA 43 443 10 HOH HOH . C 3 HOH AAA 44 444 43 HOH HOH . C 3 HOH AAA 45 445 57 HOH HOH . C 3 HOH AAA 46 446 46 HOH HOH . C 3 HOH AAA 47 447 25 HOH HOH . C 3 HOH AAA 48 448 58 HOH HOH . C 3 HOH AAA 49 449 44 HOH HOH . C 3 HOH AAA 50 450 12 HOH HOH . C 3 HOH AAA 51 451 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . B 2 -12.563 17.382 4.684 1 30.37 0 CHA BLA 301 AAA 1 HETATM 2 N NA BLA . . . B 2 -13.889 15.86 3.336 1 37.22 0 NA BLA 301 AAA 1 HETATM 3 C C1A BLA . . . B 2 -13.787 16.872 4.262 1 33.92 0 C1A BLA 301 AAA 1 HETATM 4 C C2A BLA . . . B 2 -15.133 17.251 4.63 1 37.61 0 C2A BLA 301 AAA 1 HETATM 5 C C3A BLA . . . B 2 -15.984 16.435 3.931 1 36.53 0 C3A BLA 301 AAA 1 HETATM 6 C C4A BLA . . . B 2 -15.212 15.56 3.105 1 39.53 0 C4A BLA 301 AAA 1 HETATM 7 C CMA BLA . . . B 2 -17.473 16.438 3.982 1 39.22 0 CMA BLA 301 AAA 1 HETATM 8 C CAA BLA . . . B 2 -15.531 18.277 5.655 1 45.02 0 CAA BLA 301 AAA 1 HETATM 9 C CBA BLA . . . B 2 -15.361 19.729 5.229 1 55.19 0 CBA BLA 301 AAA 1 HETATM 10 C CGA BLA . . . B 2 -14.838 20.636 6.337 1 67.68 0 CGA BLA 301 AAA 1 HETATM 11 O O1A BLA . . . B 2 -13.779 21.287 6.112 1 73.15 0 O1A BLA 301 AAA 1 HETATM 12 O O2A BLA . . . B 2 -15.479 20.687 7.425 1 63.82 0 O2A BLA 301 AAA 1 HETATM 13 C CHB BLA . . . B 2 -15.689 14.598 2.245 1 39.96 0 CHB BLA 301 AAA 1 HETATM 14 N NB BLA . . . B 2 -13.813 14.038 0.828 1 39.3 0 NB BLA 301 AAA 1 HETATM 15 C C1B BLA . . . B 2 -15.014 13.776 1.437 1 39.62 0 C1B BLA 301 AAA 1 HETATM 16 C C2B BLA . . . B 2 -15.443 12.461 1.097 1 42.94 0 C2B BLA 301 AAA 1 HETATM 17 C C3B BLA . . . B 2 -14.476 11.913 0.248 1 44.68 0 C3B BLA 301 AAA 1 HETATM 18 C C4B BLA . . . B 2 -13.391 12.908 0.172 1 43.52 0 C4B BLA 301 AAA 1 HETATM 19 C CMB BLA . . . B 2 -16.692 11.766 1.555 1 47.4 0 CMB BLA 301 AAA 1 HETATM 20 O OB BLA . . . B 2 -12.313 12.772 -0.373 1 46.2 0 OB BLA 301 AAA 1 HETATM 21 C CAB BLA . . . B 2 -14.509 10.698 -0.411 1 51.53 0 CAB BLA 301 AAA 1 HETATM 22 C CBB BLA . . . B 2 -14.028 10.507 -1.612 1 54.37 0 CBB BLA 301 AAA 1 HETATM 23 N NC BLA . . . B 2 -11.17 13.034 2.741 1 29.19 0 NC BLA 301 AAA 1 HETATM 24 C C1C BLA . . . B 2 -11.396 11.69 2.488 1 28.08 0 C1C BLA 301 AAA 1 HETATM 25 C C2C BLA . . . B 2 -10.167 11.078 2.16 1 30.91 0 C2C BLA 301 AAA 1 HETATM 26 C C3C BLA . . . B 2 -9.179 12.074 2.345 1 31.2 0 C3C BLA 301 AAA 1 HETATM 27 C C4C BLA . . . B 2 -9.798 13.253 2.794 1 28.12 0 C4C BLA 301 AAA 1 HETATM 28 C CMC BLA . . . B 2 -9.991 9.655 1.706 1 31.61 0 CMC BLA 301 AAA 1 HETATM 29 O OC BLA . . . B 2 -12.457 11.146 2.542 1 27.79 0 OC BLA 301 AAA 1 HETATM 30 C CAC BLA . . . B 2 -7.81 11.937 2.071 1 34.06 0 CAC BLA 301 AAA 1 HETATM 31 C CBC BLA . . . B 2 -7.103 10.857 2.258 1 36.47 0 CBC BLA 301 AAA 1 HETATM 32 C CHD BLA . . . B 2 -9.182 14.396 3.167 1 29.12 0 CHD BLA 301 AAA 1 HETATM 33 N ND BLA . . . B 2 -11.11 15.828 3.529 1 26.93 0 ND BLA 301 AAA 1 HETATM 34 C C1D BLA . . . B 2 -9.773 15.562 3.588 1 27.82 0 C1D BLA 301 AAA 1 HETATM 35 C C2D BLA . . . B 2 -9.078 16.691 4.176 1 29.52 0 C2D BLA 301 AAA 1 HETATM 36 C C3D BLA . . . B 2 -10.021 17.516 4.682 1 31.03 0 C3D BLA 301 AAA 1 HETATM 37 C C4D BLA . . . B 2 -11.303 16.93 4.31 1 29.57 0 C4D BLA 301 AAA 1 HETATM 38 C CMD BLA . . . B 2 -7.597 16.899 4.245 1 32.52 0 CMD BLA 301 AAA 1 HETATM 39 C CAD BLA . . . B 2 -9.799 18.767 5.475 1 33.35 0 CAD BLA 301 AAA 1 HETATM 40 C CBD BLA . . . B 2 -9.933 20.019 4.616 1 36.96 0 CBD BLA 301 AAA 1 HETATM 41 C CGD BLA . . . B 2 -9.679 21.306 5.374 1 39.73 0 CGD BLA 301 AAA 1 HETATM 42 O O1D BLA . . . B 2 -10.354 21.498 6.396 1 38.19 0 O1D BLA 301 AAA 1 HETATM 43 O O2D BLA . . . B 2 -8.802 22.111 4.936 1 39.27 0 O2D BLA 301 AAA 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #