data_7O3F # _model_server_result.job_id tLrOdlC10PNKt87P46vxMQ _model_server_result.datetime_utc '2024-11-30 01:12:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 7O3F # _exptl.entry_id 7O3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7O3F _cell.length_a 82.616 _cell.length_b 112.69 _cell.length_c 62.647 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 42 A SER 37 1_555 A N CSO 43 A CSO 38 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C SER 42 A SER 37 1_555 A N CSO 43 A CSO 38 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C CSO 43 A CSO 38 1_555 A N GLU 44 A GLU 39 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C CSO 43 A CSO 38 1_555 A N GLU 44 A GLU 39 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A NZ LYS 127 A LYS 122 1_555 C C01 V0W . A V0W 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale6 B C GLY 6 P GLY 44 1_555 B N SEP 7 P SEP 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 B C SEP 7 P SEP 45 1_555 B N ILE 8 P ILE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OE1 GLU 7 A GLU 2 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc2 A OE1 GLU 7 A GLU 2 1_555 E MG MG . A MG 303 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc3 E MG MG . A MG 303 1_555 I O HOH . A HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc4 E MG MG . A MG 303 1_555 I O HOH . A HOH 442 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc5 E MG MG . A MG 303 1_555 I O HOH . A HOH 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc6 E MG MG . A MG 303 1_555 I O HOH . A HOH 575 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 143 n n C1 C2 GOL sing 144 n n C1 H11 GOL sing 145 n n C1 H12 GOL sing 146 n n O1 HO1 GOL sing 147 n n C2 O2 GOL sing 148 n n C2 C3 GOL sing 149 n n C2 H2 GOL sing 150 n n O2 HO2 GOL sing 151 n n C3 O3 GOL sing 152 n n C3 H31 GOL sing 153 n n C3 H32 GOL sing 154 n n O3 HO3 GOL sing 155 n n # _atom_sites.entry_id 7O3F _atom_sites.fract_transf_matrix[1][1] 0.012104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V0W A 1 301 1 V0W LNO . D 4 CL A 1 302 1 CL CL . E 5 MG A 1 303 1 MG MG . F 6 GOL A 1 304 1 GOL GOL . G 6 GOL A 1 305 2 GOL GOL . H 6 GOL A 1 306 3 GOL GOL . I 7 HOH A 1 401 163 HOH HOH . I 7 HOH A 2 402 223 HOH HOH . I 7 HOH A 3 403 172 HOH HOH . I 7 HOH A 4 404 230 HOH HOH . I 7 HOH A 5 405 232 HOH HOH . I 7 HOH A 6 406 126 HOH HOH . I 7 HOH A 7 407 202 HOH HOH . I 7 HOH A 8 408 208 HOH HOH . I 7 HOH A 9 409 98 HOH HOH . I 7 HOH A 10 410 130 HOH HOH . I 7 HOH A 11 411 33 HOH HOH . I 7 HOH A 12 412 30 HOH HOH . I 7 HOH A 13 413 185 HOH HOH . I 7 HOH A 14 414 138 HOH HOH . I 7 HOH A 15 415 17 HOH HOH . I 7 HOH A 16 416 52 HOH HOH . I 7 HOH A 17 417 228 HOH HOH . I 7 HOH A 18 418 129 HOH HOH . I 7 HOH A 19 419 196 HOH HOH . I 7 HOH A 20 420 145 HOH HOH . I 7 HOH A 21 421 54 HOH HOH . I 7 HOH A 22 422 187 HOH HOH . I 7 HOH A 23 423 262 HOH HOH . I 7 HOH A 24 424 155 HOH HOH . I 7 HOH A 25 425 148 HOH HOH . I 7 HOH A 26 426 247 HOH HOH . I 7 HOH A 27 427 53 HOH HOH . I 7 HOH A 28 428 136 HOH HOH . I 7 HOH A 29 429 3 HOH HOH . I 7 HOH A 30 430 55 HOH HOH . I 7 HOH A 31 431 156 HOH HOH . I 7 HOH A 32 432 258 HOH HOH . I 7 HOH A 33 433 166 HOH HOH . I 7 HOH A 34 434 51 HOH HOH . I 7 HOH A 35 435 114 HOH HOH . I 7 HOH A 36 436 161 HOH HOH . I 7 HOH A 37 437 259 HOH HOH . I 7 HOH A 38 438 8 HOH HOH . I 7 HOH A 39 439 4 HOH HOH . I 7 HOH A 40 440 164 HOH HOH . I 7 HOH A 41 441 90 HOH HOH . I 7 HOH A 42 442 34 HOH HOH . I 7 HOH A 43 443 72 HOH HOH . I 7 HOH A 44 444 88 HOH HOH . I 7 HOH A 45 445 86 HOH HOH . I 7 HOH A 46 446 16 HOH HOH . I 7 HOH A 47 447 31 HOH HOH . I 7 HOH A 48 448 106 HOH HOH . I 7 HOH A 49 449 260 HOH HOH . I 7 HOH A 50 450 13 HOH HOH . I 7 HOH A 51 451 137 HOH HOH . I 7 HOH A 52 452 76 HOH HOH . I 7 HOH A 53 453 78 HOH HOH . I 7 HOH A 54 454 147 HOH HOH . I 7 HOH A 55 455 154 HOH HOH . I 7 HOH A 56 456 182 HOH HOH . I 7 HOH A 57 457 74 HOH HOH . I 7 HOH A 58 458 143 HOH HOH . I 7 HOH A 59 459 22 HOH HOH . I 7 HOH A 60 460 38 HOH HOH . I 7 HOH A 61 461 25 HOH HOH . I 7 HOH A 62 462 79 HOH HOH . I 7 HOH A 63 463 149 HOH HOH . I 7 HOH A 64 464 10 HOH HOH . I 7 HOH A 65 465 39 HOH HOH . I 7 HOH A 66 466 160 HOH HOH . I 7 HOH A 67 467 135 HOH HOH . I 7 HOH A 68 468 12 HOH HOH . I 7 HOH A 69 469 14 HOH HOH . I 7 HOH A 70 470 236 HOH HOH . I 7 HOH A 71 471 6 HOH HOH . I 7 HOH A 72 472 168 HOH HOH . I 7 HOH A 73 473 217 HOH HOH . I 7 HOH A 74 474 32 HOH HOH . I 7 HOH A 75 475 15 HOH HOH . I 7 HOH A 76 476 103 HOH HOH . I 7 HOH A 77 477 71 HOH HOH . I 7 HOH A 78 478 251 HOH HOH . I 7 HOH A 79 479 152 HOH HOH . I 7 HOH A 80 480 141 HOH HOH . I 7 HOH A 81 481 195 HOH HOH . I 7 HOH A 82 482 27 HOH HOH . I 7 HOH A 83 483 115 HOH HOH . I 7 HOH A 84 484 9 HOH HOH . I 7 HOH A 85 485 111 HOH HOH . I 7 HOH A 86 486 157 HOH HOH . I 7 HOH A 87 487 210 HOH HOH . I 7 HOH A 88 488 49 HOH HOH . I 7 HOH A 89 489 63 HOH HOH . I 7 HOH A 90 490 59 HOH HOH . I 7 HOH A 91 491 92 HOH HOH . I 7 HOH A 92 492 117 HOH HOH . I 7 HOH A 93 493 102 HOH HOH . I 7 HOH A 94 494 158 HOH HOH . I 7 HOH A 95 495 171 HOH HOH . I 7 HOH A 96 496 28 HOH HOH . I 7 HOH A 97 497 67 HOH HOH . I 7 HOH A 98 498 46 HOH HOH . I 7 HOH A 99 499 109 HOH HOH . I 7 HOH A 100 500 29 HOH HOH . I 7 HOH A 101 501 87 HOH HOH . I 7 HOH A 102 502 70 HOH HOH . I 7 HOH A 103 503 177 HOH HOH . I 7 HOH A 104 504 100 HOH HOH . I 7 HOH A 105 505 21 HOH HOH . I 7 HOH A 106 506 57 HOH HOH . I 7 HOH A 107 507 19 HOH HOH . I 7 HOH A 108 508 65 HOH HOH . I 7 HOH A 109 509 68 HOH HOH . I 7 HOH A 110 510 64 HOH HOH . I 7 HOH A 111 511 99 HOH HOH . I 7 HOH A 112 512 60 HOH HOH . I 7 HOH A 113 513 245 HOH HOH . I 7 HOH A 114 514 73 HOH HOH . I 7 HOH A 115 515 44 HOH HOH . I 7 HOH A 116 516 89 HOH HOH . I 7 HOH A 117 517 176 HOH HOH . I 7 HOH A 118 518 119 HOH HOH . I 7 HOH A 119 519 36 HOH HOH . I 7 HOH A 120 520 133 HOH HOH . I 7 HOH A 121 521 244 HOH HOH . I 7 HOH A 122 522 40 HOH HOH . I 7 HOH A 123 523 218 HOH HOH . I 7 HOH A 124 524 48 HOH HOH . I 7 HOH A 125 525 41 HOH HOH . I 7 HOH A 126 526 45 HOH HOH . I 7 HOH A 127 527 226 HOH HOH . I 7 HOH A 128 528 80 HOH HOH . I 7 HOH A 129 529 116 HOH HOH . I 7 HOH A 130 530 43 HOH HOH . I 7 HOH A 131 531 169 HOH HOH . I 7 HOH A 132 532 144 HOH HOH . I 7 HOH A 133 533 134 HOH HOH . I 7 HOH A 134 534 24 HOH HOH . I 7 HOH A 135 535 91 HOH HOH . I 7 HOH A 136 536 216 HOH HOH . I 7 HOH A 137 537 233 HOH HOH . I 7 HOH A 138 538 140 HOH HOH . I 7 HOH A 139 539 104 HOH HOH . I 7 HOH A 140 540 58 HOH HOH . I 7 HOH A 141 541 18 HOH HOH . I 7 HOH A 142 542 82 HOH HOH . I 7 HOH A 143 543 83 HOH HOH . I 7 HOH A 144 544 242 HOH HOH . I 7 HOH A 145 545 220 HOH HOH . I 7 HOH A 146 546 23 HOH HOH . I 7 HOH A 147 547 42 HOH HOH . I 7 HOH A 148 548 198 HOH HOH . I 7 HOH A 149 549 35 HOH HOH . I 7 HOH A 150 550 125 HOH HOH . I 7 HOH A 151 551 56 HOH HOH . I 7 HOH A 152 552 107 HOH HOH . I 7 HOH A 153 553 183 HOH HOH . I 7 HOH A 154 554 240 HOH HOH . I 7 HOH A 155 555 201 HOH HOH . I 7 HOH A 156 556 139 HOH HOH . I 7 HOH A 157 557 95 HOH HOH . I 7 HOH A 158 558 181 HOH HOH . I 7 HOH A 159 559 75 HOH HOH . I 7 HOH A 160 560 132 HOH HOH . I 7 HOH A 161 561 96 HOH HOH . I 7 HOH A 162 562 11 HOH HOH . I 7 HOH A 163 563 122 HOH HOH . I 7 HOH A 164 564 142 HOH HOH . I 7 HOH A 165 565 189 HOH HOH . I 7 HOH A 166 566 85 HOH HOH . I 7 HOH A 167 567 261 HOH HOH . I 7 HOH A 168 568 118 HOH HOH . I 7 HOH A 169 569 69 HOH HOH . I 7 HOH A 170 570 231 HOH HOH . I 7 HOH A 171 571 199 HOH HOH . I 7 HOH A 172 572 84 HOH HOH . I 7 HOH A 173 573 61 HOH HOH . I 7 HOH A 174 574 37 HOH HOH . I 7 HOH A 175 575 123 HOH HOH . I 7 HOH A 176 576 225 HOH HOH . I 7 HOH A 177 577 215 HOH HOH . I 7 HOH A 178 578 234 HOH HOH . I 7 HOH A 179 579 243 HOH HOH . I 7 HOH A 180 580 250 HOH HOH . I 7 HOH A 181 581 191 HOH HOH . I 7 HOH A 182 582 128 HOH HOH . I 7 HOH A 183 583 209 HOH HOH . I 7 HOH A 184 584 241 HOH HOH . I 7 HOH A 185 585 219 HOH HOH . I 7 HOH A 186 586 93 HOH HOH . I 7 HOH A 187 587 205 HOH HOH . I 7 HOH A 188 588 153 HOH HOH . I 7 HOH A 189 589 222 HOH HOH . I 7 HOH A 190 590 66 HOH HOH . I 7 HOH A 191 591 151 HOH HOH . I 7 HOH A 192 592 20 HOH HOH . I 7 HOH A 193 593 62 HOH HOH . I 7 HOH A 194 594 255 HOH HOH . I 7 HOH A 195 595 131 HOH HOH . I 7 HOH A 196 596 213 HOH HOH . I 7 HOH A 197 597 121 HOH HOH . I 7 HOH A 198 598 221 HOH HOH . I 7 HOH A 199 599 110 HOH HOH . I 7 HOH A 200 600 127 HOH HOH . I 7 HOH A 201 601 124 HOH HOH . I 7 HOH A 202 602 192 HOH HOH . I 7 HOH A 203 603 112 HOH HOH . I 7 HOH A 204 604 180 HOH HOH . I 7 HOH A 205 605 194 HOH HOH . I 7 HOH A 206 606 186 HOH HOH . I 7 HOH A 207 607 170 HOH HOH . I 7 HOH A 208 608 174 HOH HOH . I 7 HOH A 209 609 229 HOH HOH . I 7 HOH A 210 610 108 HOH HOH . I 7 HOH A 211 611 238 HOH HOH . I 7 HOH A 212 612 105 HOH HOH . I 7 HOH A 213 613 256 HOH HOH . I 7 HOH A 214 614 77 HOH HOH . I 7 HOH A 215 615 248 HOH HOH . J 7 HOH P 1 101 5 HOH HOH . J 7 HOH P 2 102 162 HOH HOH . J 7 HOH P 3 103 94 HOH HOH . J 7 HOH P 4 104 26 HOH HOH . J 7 HOH P 5 105 47 HOH HOH . J 7 HOH P 6 106 150 HOH HOH . J 7 HOH P 7 107 165 HOH HOH . J 7 HOH P 8 108 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 6 -2.141 -24.386 5.713 1 45.18 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . G 6 -1.425 -24.845 4.606 1 53.06 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . G 6 -2.414 -22.881 5.498 1 46.26 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . G 6 -3.361 -22.66 4.515 1 50.03 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . G 6 -2.9 -22.356 6.859 1 44.51 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . G 6 -2.102 -21.273 7.197 1 53.04 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #