data_7O3K # _model_server_result.job_id ejk8fmjpm67I6dFTH-lRaA _model_server_result.datetime_utc '2024-11-24 09:23:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7O3K # _exptl.entry_id 7O3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7O3K _cell.length_a 39.81 _cell.length_b 39.81 _cell.length_c 119.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 27 1_555 A SG CYS 113 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 41 A CYS 60 1_555 A SG CYS 165 A CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 7O3K _atom_sites.fract_transf_matrix[1][1] 0.025119 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025119 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BLA A 1 301 201 BLA BLA . C 3 HOH A 1 401 13 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . C 3 HOH A 3 403 10 HOH HOH . C 3 HOH A 4 404 8 HOH HOH . C 3 HOH A 5 405 11 HOH HOH . C 3 HOH A 6 406 3 HOH HOH . C 3 HOH A 7 407 6 HOH HOH . C 3 HOH A 8 408 5 HOH HOH . C 3 HOH A 9 409 1 HOH HOH . C 3 HOH A 10 410 7 HOH HOH . C 3 HOH A 11 411 14 HOH HOH . C 3 HOH A 12 412 4 HOH HOH . C 3 HOH A 13 413 12 HOH HOH . C 3 HOH A 14 414 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . B 2 41.554 6.831 -6.818 1 45.49 ? CHA BLA 301 A 1 HETATM 2 N NA BLA . . . B 2 43.153 5.296 -7.83 1 44.75 ? NA BLA 301 A 1 HETATM 3 C C1A BLA . . . B 2 41.992 5.457 -7.161 1 46.91 ? C1A BLA 301 A 1 HETATM 4 C C2A BLA . . . B 2 41.275 4.179 -6.833 1 50.81 ? C2A BLA 301 A 1 HETATM 5 C C3A BLA . . . B 2 42.185 3.167 -7.418 1 48.26 ? C3A BLA 301 A 1 HETATM 6 C C4A BLA . . . B 2 43.287 3.969 -8.006 1 44.55 ? C4A BLA 301 A 1 HETATM 7 C CMA BLA . . . B 2 42.035 1.67 -7.433 1 48.34 ? CMA BLA 301 A 1 HETATM 8 C CAA BLA . . . B 2 39.971 3.879 -6.103 1 55.37 ? CAA BLA 301 A 1 HETATM 9 C CBA BLA . . . B 2 39.21 5.101 -5.59 1 56.61 ? CBA BLA 301 A 1 HETATM 10 C CGA BLA . . . B 2 38.201 4.735 -4.527 1 73.34 ? CGA BLA 301 A 1 HETATM 11 O O1A BLA . . . B 2 37.166 5.431 -4.429 1 71.91 ? O1A BLA 301 A 1 HETATM 12 O O2A BLA . . . B 2 38.436 3.757 -3.786 1 69.41 ? O2A BLA 301 A 1 HETATM 13 C CHB BLA . . . B 2 44.47 3.396 -8.696 1 41.81 ? CHB BLA 301 A 1 HETATM 14 N NB BLA . . . B 2 44.992 5.278 -10.205 1 39.14 ? NB BLA 301 A 1 HETATM 15 C C1B BLA . . . B 2 45.29 4.038 -9.754 1 40.49 ? C1B BLA 301 A 1 HETATM 16 C C2B BLA . . . B 2 46.474 3.395 -10.397 1 37.39 ? C2B BLA 301 A 1 HETATM 17 C C3B BLA . . . B 2 46.901 4.446 -11.354 1 37.12 ? C3B BLA 301 A 1 HETATM 18 C C4B BLA . . . B 2 45.922 5.537 -11.144 1 36.66 ? C4B BLA 301 A 1 HETATM 19 C CMB BLA . . . B 2 47.039 2.029 -10.101 1 37.31 ? CMB BLA 301 A 1 HETATM 20 O OB BLA . . . B 2 45.969 6.638 -11.806 1 36.71 ? OB BLA 301 A 1 HETATM 21 C CAB BLA . . . B 2 48.03 4.46 -12.324 1 36.12 ? CAB BLA 301 A 1 HETATM 22 C CBB BLA . . . B 2 48.842 3.434 -12.494 1 35.82 ? CBB BLA 301 A 1 HETATM 23 N NC BLA . . . B 2 46.205 7.858 -8.54 1 36.99 ? NC BLA 301 A 1 HETATM 24 C C1C BLA . . . B 2 47.426 7.464 -8.969 1 36.65 ? C1C BLA 301 A 1 HETATM 25 C C2C BLA . . . B 2 48.278 8.512 -9.599 1 33.62 ? C2C BLA 301 A 1 HETATM 26 C C3C BLA . . . B 2 47.373 9.674 -9.493 1 35.18 ? C3C BLA 301 A 1 HETATM 27 C C4C BLA . . . B 2 46.141 9.168 -8.842 1 36.16 ? C4C BLA 301 A 1 HETATM 28 C CMC BLA . . . B 2 49.666 8.422 -10.175 1 33.48 ? CMC BLA 301 A 1 HETATM 29 O OC BLA . . . B 2 47.833 6.251 -8.84 1 37.36 ? OC BLA 301 A 1 HETATM 30 C CAC BLA . . . B 2 47.617 11.063 -9.951 1 35.35 ? CAC BLA 301 A 1 HETATM 31 C CBC BLA . . . B 2 48.412 11.864 -9.265 1 33.36 ? CBC BLA 301 A 1 HETATM 32 C CHD BLA . . . B 2 44.943 9.976 -8.527 1 37.56 ? CHD BLA 301 A 1 HETATM 33 N ND BLA . . . B 2 43.422 8.15 -7.788 1 40.73 ? ND BLA 301 A 1 HETATM 34 C C1D BLA . . . B 2 43.717 9.474 -7.865 1 39.24 ? C1D BLA 301 A 1 HETATM 35 C C2D BLA . . . B 2 42.715 10.364 -7.233 1 39.08 ? C2D BLA 301 A 1 HETATM 36 C C3D BLA . . . B 2 41.696 9.43 -6.718 1 41.75 ? C3D BLA 301 A 1 HETATM 37 C C4D BLA . . . B 2 42.241 8.106 -7.116 1 41.91 ? C4D BLA 301 A 1 HETATM 38 C CMD BLA . . . B 2 42.755 11.86 -7.147 1 38.6 ? CMD BLA 301 A 1 HETATM 39 C CAD BLA . . . B 2 40.42 9.732 -5.965 1 44.15 ? CAD BLA 301 A 1 HETATM 40 C CBD BLA . . . B 2 39.217 9.424 -6.849 1 48.43 ? CBD BLA 301 A 1 HETATM 41 C CGD BLA . . . B 2 37.942 9.717 -6.097 1 49.67 ? CGD BLA 301 A 1 HETATM 42 O O1D BLA . . . B 2 37.136 8.781 -5.893 1 53.91 ? O1D BLA 301 A 1 HETATM 43 O O2D BLA . . . B 2 37.741 10.887 -5.707 1 48.12 ? O2D BLA 301 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #