data_7O3U
#
_model_server_result.job_id            DshGSJahINGr7gTfzugtCQ 
_model_server_result.datetime_utc      '2024-11-09 02:23:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7o3u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    7O3U 
#
_exptl.entry_id    7O3U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              479.483 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            v-coelenterazine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7O3U 
_cell.length_a            42.88 
_cell.length_b            42.88 
_cell.length_c            375.44 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7O3U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 30 A ASP 30 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc2 A OD1 ASN 32 A ASN 32 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc3 A OD1 ASN 34 A ASN 34 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc4 A O LYS 36 A LYS 36 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc5 C CA CA . A CA 202 1_555 D O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc6 C CA CA . A CA 202 1_555 D O HOH . A HOH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
#
_chem_comp.formula           'C28 H21 N3 O5' 
_chem_comp.formula_weight    479.483 
_chem_comp.id                V1W 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              v-coelenterazine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C20 V1W doub 358 n y 
C21 C16 V1W sing 359 n y 
C20 C19 V1W sing 360 n y 
C19 C18 V1W doub 361 n y 
C16 C15 V1W sing 362 n n 
C16 C17 V1W doub 363 n y 
C15 C6 V1W sing 364 n n 
C13 C14 V1W doub 365 n y 
C13 C12 V1W sing 366 n y 
C18 C17 V1W sing 367 n y 
C14 C10 V1W sing 368 n y 
O1 C12 V1W sing 369 n n 
N3 C6 V1W doub 370 n n 
N3 C5 V1W sing 371 n n 
C6 C2 V1W sing 372 n n 
C12 C11 V1W doub 373 n y 
C10 C5 V1W doub 374 n y 
C10 C9 V1W sing 375 n y 
C5 C4 V1W sing 376 n y 
C2 N2 V1W doub 377 n n 
C2 N1 V1W sing 378 n n 
C11 C9 V1W sing 379 n y 
C9 C8 V1W doub 380 n y 
N2 C3 V1W sing 381 n n 
C4 N1 V1W sing 382 n n 
C4 C7 V1W doub 383 n y 
N1 C1 V1W sing 384 n n 
O3 O4 V1W sing 385 n n 
O3 C3 V1W sing 386 n n 
C8 C7 V1W sing 387 n y 
C3 C1 V1W sing 388 n n 
C3 C22 V1W sing 389 n n 
C1 O2 V1W doub 390 n n 
C22 C23 V1W sing 391 n n 
C23 C28 V1W doub 392 n y 
C23 C24 V1W sing 393 n y 
C28 C27 V1W sing 394 n y 
C24 C25 V1W doub 395 n y 
C27 C26 V1W doub 396 n y 
C25 C26 V1W sing 397 n y 
C26 O5 V1W sing 398 n n 
C11 H1 V1W sing 399 n n 
C13 H2 V1W sing 400 n n 
C14 H3 V1W sing 401 n n 
C15 H4 V1W sing 402 n n 
C15 H5 V1W sing 403 n n 
C17 H6 V1W sing 404 n n 
C18 H7 V1W sing 405 n n 
C19 H8 V1W sing 406 n n 
C20 H9 V1W sing 407 n n 
C21 H10 V1W sing 408 n n 
C22 H11 V1W sing 409 n n 
C22 H12 V1W sing 410 n n 
C24 H13 V1W sing 411 n n 
C25 H14 V1W sing 412 n n 
C27 H15 V1W sing 413 n n 
C28 H16 V1W sing 414 n n 
C7 H17 V1W sing 415 n n 
C8 H18 V1W sing 416 n n 
O1 H20 V1W sing 417 n n 
O4 H21 V1W sing 418 n n 
O5 H22 V1W sing 419 n n 
#
_atom_sites.entry_id                     7O3U 
_atom_sites.fract_transf_matrix[1][1]    0.023321 
_atom_sites.fract_transf_matrix[1][2]    0.013464 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026929 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002664 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 V1W A 1 201 201 V1W VTZ . 
C 3 CA A 1 202 211 CA CA . 
D 4 HOH A 1 301 63 HOH HOH . 
D 4 HOH A 2 302 24 HOH HOH . 
D 4 HOH A 3 303 60 HOH HOH . 
D 4 HOH A 4 304 84 HOH HOH . 
D 4 HOH A 5 305 50 HOH HOH . 
D 4 HOH A 6 306 78 HOH HOH . 
D 4 HOH A 7 307 9 HOH HOH . 
D 4 HOH A 8 308 66 HOH HOH . 
D 4 HOH A 9 309 12 HOH HOH . 
D 4 HOH A 10 310 47 HOH HOH . 
D 4 HOH A 11 311 54 HOH HOH . 
D 4 HOH A 12 312 1 HOH HOH . 
D 4 HOH A 13 313 75 HOH HOH . 
D 4 HOH A 14 314 85 HOH HOH . 
D 4 HOH A 15 315 31 HOH HOH . 
D 4 HOH A 16 316 10 HOH HOH . 
D 4 HOH A 17 317 40 HOH HOH . 
D 4 HOH A 18 318 52 HOH HOH . 
D 4 HOH A 19 319 8 HOH HOH . 
D 4 HOH A 20 320 3 HOH HOH . 
D 4 HOH A 21 321 36 HOH HOH . 
D 4 HOH A 22 322 69 HOH HOH . 
D 4 HOH A 23 323 2 HOH HOH . 
D 4 HOH A 24 324 67 HOH HOH . 
D 4 HOH A 25 325 18 HOH HOH . 
D 4 HOH A 26 326 4 HOH HOH . 
D 4 HOH A 27 327 25 HOH HOH . 
D 4 HOH A 28 328 20 HOH HOH . 
D 4 HOH A 29 329 44 HOH HOH . 
D 4 HOH A 30 330 28 HOH HOH . 
D 4 HOH A 31 331 27 HOH HOH . 
D 4 HOH A 32 332 14 HOH HOH . 
D 4 HOH A 33 333 61 HOH HOH . 
D 4 HOH A 34 334 5 HOH HOH . 
D 4 HOH A 35 335 83 HOH HOH . 
D 4 HOH A 36 336 26 HOH HOH . 
D 4 HOH A 37 337 21 HOH HOH . 
D 4 HOH A 38 338 13 HOH HOH . 
D 4 HOH A 39 339 17 HOH HOH . 
D 4 HOH A 40 340 16 HOH HOH . 
D 4 HOH A 41 341 6 HOH HOH . 
D 4 HOH A 42 342 38 HOH HOH . 
D 4 HOH A 43 343 86 HOH HOH . 
D 4 HOH A 44 344 7 HOH HOH . 
D 4 HOH A 45 345 15 HOH HOH . 
D 4 HOH A 46 346 70 HOH HOH . 
D 4 HOH A 47 347 19 HOH HOH . 
D 4 HOH A 48 348 59 HOH HOH . 
D 4 HOH A 49 349 81 HOH HOH . 
D 4 HOH A 50 350 76 HOH HOH . 
D 4 HOH A 51 351 71 HOH HOH . 
D 4 HOH A 52 352 57 HOH HOH . 
D 4 HOH A 53 353 79 HOH HOH . 
D 4 HOH A 54 354 74 HOH HOH . 
D 4 HOH A 55 355 33 HOH HOH . 
D 4 HOH A 56 356 39 HOH HOH . 
D 4 HOH A 57 357 41 HOH HOH . 
D 4 HOH A 58 358 80 HOH HOH . 
D 4 HOH A 59 359 46 HOH HOH . 
D 4 HOH A 60 360 32 HOH HOH . 
D 4 HOH A 61 361 64 HOH HOH . 
D 4 HOH A 62 362 82 HOH HOH . 
D 4 HOH A 63 363 37 HOH HOH . 
D 4 HOH A 64 364 77 HOH HOH . 
D 4 HOH A 65 365 34 HOH HOH . 
D 4 HOH A 66 366 48 HOH HOH . 
D 4 HOH A 67 367 56 HOH HOH . 
D 4 HOH A 68 368 68 HOH HOH . 
D 4 HOH A 69 369 72 HOH HOH . 
D 4 HOH A 70 370 73 HOH HOH . 
D 4 HOH A 71 371 43 HOH HOH . 
D 4 HOH A 72 372 55 HOH HOH . 
D 4 HOH A 73 373 45 HOH HOH . 
D 4 HOH A 74 374 65 HOH HOH . 
D 4 HOH A 75 375 29 HOH HOH . 
D 4 HOH A 76 376 58 HOH HOH . 
D 4 HOH A 77 377 11 HOH HOH . 
D 4 HOH A 78 378 53 HOH HOH . 
D 4 HOH A 79 379 22 HOH HOH . 
D 4 HOH A 80 380 62 HOH HOH . 
D 4 HOH A 81 381 23 HOH HOH . 
D 4 HOH A 82 382 42 HOH HOH . 
D 4 HOH A 83 383 51 HOH HOH . 
D 4 HOH A 84 384 49 HOH HOH . 
D 4 HOH A 85 385 30 HOH HOH . 
D 4 HOH A 86 386 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 V1W . . . B 2 14.266 -2.978 -17.464 1 32.81 ? C1 V1W 201 A 1 
HETATM 2 C C10 V1W . . . B 2 16.243 0.779 -20.07 1 28.3 ? C10 V1W 201 A 1 
HETATM 3 C C11 V1W . . . B 2 18.148 2.11 -19.408 1 30.38 ? C11 V1W 201 A 1 
HETATM 4 C C12 V1W . . . B 2 18.057 2.78 -20.625 1 29.69 ? C12 V1W 201 A 1 
HETATM 5 C C13 V1W . . . B 2 17.037 2.492 -21.473 1 18.77 ? C13 V1W 201 A 1 
HETATM 6 C C14 V1W . . . B 2 16.117 1.493 -21.295 1 25.55 ? C14 V1W 201 A 1 
HETATM 7 C C15 V1W . . . B 2 12.386 -1.92 -21.676 1 22.84 ? C15 V1W 201 A 1 
HETATM 8 C C16 V1W . . . B 2 11.263 -0.864 -21.729 1 27.89 ? C16 V1W 201 A 1 
HETATM 9 C C17 V1W . . . B 2 9.844 -1.274 -21.376 1 24.43 ? C17 V1W 201 A 1 
HETATM 10 C C18 V1W . . . B 2 8.826 -0.419 -21.379 1 26.9 ? C18 V1W 201 A 1 
HETATM 11 C C19 V1W . . . B 2 9.091 1.021 -21.75 1 27.33 ? C19 V1W 201 A 1 
HETATM 12 C C2 V1W . . . B 2 13.536 -2.33 -19.49 1 28.45 ? C2 V1W 201 A 1 
HETATM 13 C C20 V1W . . . B 2 10.338 1.377 -22.039 1 29.31 ? C20 V1W 201 A 1 
HETATM 14 C C21 V1W . . . B 2 11.511 0.394 -22.043 1 27.86 ? C21 V1W 201 A 1 
HETATM 15 C C22 V1W . . . B 2 11.924 -3.804 -16.941 1 28.4 ? C22 V1W 201 A 1 
HETATM 16 C C23 V1W . . . B 2 12.33 -4.384 -15.58 1 29.7 ? C23 V1W 201 A 1 
HETATM 17 C C24 V1W . . . B 2 12.641 -3.556 -14.604 1 29.29 ? C24 V1W 201 A 1 
HETATM 18 C C25 V1W . . . B 2 13.027 -4.17 -13.239 1 27.9 ? C25 V1W 201 A 1 
HETATM 19 C C26 V1W . . . B 2 13.062 -5.478 -13.083 1 30.86 ? C26 V1W 201 A 1 
HETATM 20 C C27 V1W . . . B 2 12.702 -6.404 -14.233 1 34.53 ? C27 V1W 201 A 1 
HETATM 21 C C28 V1W . . . B 2 12.366 -5.892 -15.408 1 34.54 ? C28 V1W 201 A 1 
HETATM 22 C C3 V1W . . . B 2 13.131 -3.86 -17.882 1 32.69 ? C3 V1W 201 A 1 
HETATM 23 C C4 V1W . . . B 2 15.428 -1.007 -18.644 1 28.04 ? C4 V1W 201 A 1 
HETATM 24 C C5 V1W . . . B 2 15.382 -0.261 -19.813 1 29.63 ? C5 V1W 201 A 1 
HETATM 25 C C6 V1W . . . B 2 13.455 -1.598 -20.632 1 24.71 ? C6 V1W 201 A 1 
HETATM 26 C C7 V1W . . . B 2 16.399 -0.688 -17.734 1 26.7 ? C7 V1W 201 A 1 
HETATM 27 C C8 V1W . . . B 2 17.307 0.344 -17.921 1 28.95 ? C8 V1W 201 A 1 
HETATM 28 C C9 V1W . . . B 2 17.249 1.061 -19.157 1 31.13 ? C9 V1W 201 A 1 
HETATM 29 N N1 V1W . . . B 2 14.498 -2.003 -18.56 1 28.13 ? N1 V1W 201 A 1 
HETATM 30 N N2 V1W . . . B 2 12.657 -3.39 -19.123 1 31.76 ? N2 V1W 201 A 1 
HETATM 31 N N3 V1W . . . B 2 14.403 -0.576 -20.735 1 21.58 ? N3 V1W 201 A 1 
HETATM 32 O O1 V1W . . . B 2 18.961 3.818 -20.944 1 27.61 ? O1 V1W 201 A 1 
HETATM 33 O O2 V1W . . . B 2 15.089 -3.05 -16.346 1 35.97 ? O2 V1W 201 A 1 
HETATM 34 O O3 V1W . . . B 2 13.611 -5.149 -18.091 1 42.04 ? O3 V1W 201 A 1 
HETATM 35 O O4 V1W . . . B 2 15.026 -5.073 -18.041 1 53.79 ? O4 V1W 201 A 1 
HETATM 36 O O5 V1W . . . B 2 13.441 -6.006 -11.828 1 30.17 ? O5 V1W 201 A 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           36 
#