data_7O3W # _model_server_result.job_id xHVKfA9n4NykuOnjSkoO3A _model_server_result.datetime_utc '2024-12-03 17:59:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 7O3W # _exptl.entry_id 7O3W _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7O3W _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 84-meric _pdbx_struct_assembly.oligomeric_count 84 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.900969 -0.433884 0 0.433884 0.900969 0 0 0 1 0 0 0 3 'point symmetry operation' ? ? 0.62349 -0.781831 0 0.781831 0.62349 0 0 0 1 0 0 0 4 'point symmetry operation' ? ? 0.222521 -0.974928 0 0.974928 0.222521 0 0 0 1 0 0 0 5 'point symmetry operation' ? ? -0.222521 -0.974928 0 0.974928 -0.222521 0 0 0 1 0 0 0 6 'point symmetry operation' ? ? -0.62349 -0.781831 0 0.781831 -0.62349 0 0 0 1 0 0 0 7 'point symmetry operation' ? ? -0.900969 -0.433884 0 0.433884 -0.900969 0 0 0 1 0 0 0 8 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 0 0 0 9 'point symmetry operation' ? ? -0.900969 0.433884 0 -0.433884 -0.900969 0 0 0 1 0 0 0 10 'point symmetry operation' ? ? -0.62349 0.781831 0 -0.781831 -0.62349 0 0 0 1 0 0 0 11 'point symmetry operation' ? ? -0.222521 0.974928 0 -0.974928 -0.222521 0 0 0 1 0 0 0 12 'point symmetry operation' ? ? 0.222521 0.974928 0 -0.974928 0.222521 0 0 0 1 0 0 0 13 'point symmetry operation' ? ? 0.62349 0.781831 0 -0.781831 0.62349 0 0 0 1 0 0 0 14 'point symmetry operation' ? ? 0.900969 0.433884 0 -0.433884 0.900969 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7O3W _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id G _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ADP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 660 _pdbx_nonpoly_scheme.pdb_mon_id ADP _pdbx_nonpoly_scheme.auth_mon_id ADP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . G 2 88.86 -10.116 -39.872 1 0 ? PB ADP 301 A 1 HETATM 2 O O1B ADP . . . G 2 88.824 -9.187 -41.062 1 0 ? O1B ADP 301 A 1 HETATM 3 O O2B ADP . . . G 2 89.535 -11.441 -40.137 1 0 ? O2B ADP 301 A 1 HETATM 4 O O3B ADP . . . G 2 89.27 -9.455 -38.578 1 0 ? O3B ADP 301 A 1 HETATM 5 P PA ADP . . . G 2 86.247 -9.385 -39.201 1 0 ? PA ADP 301 A 1 HETATM 6 O O1A ADP . . . G 2 85.456 -8.985 -40.424 1 0 ? O1A ADP 301 A 1 HETATM 7 O O2A ADP . . . G 2 86.968 -8.334 -38.393 1 0 ? O2A ADP 301 A 1 HETATM 8 O O3A ADP . . . G 2 87.316 -10.507 -39.637 1 0 ? O3A ADP 301 A 1 HETATM 9 O O5' ADP . . . G 2 85.269 -10.197 -38.213 1 0 ? O5' ADP 301 A 1 HETATM 10 C C5' ADP . . . G 2 84.585 -11.363 -38.668 1 0 ? C5' ADP 301 A 1 HETATM 11 C C4' ADP . . . G 2 83.095 -11.065 -38.782 1 0 ? C4' ADP 301 A 1 HETATM 12 O O4' ADP . . . G 2 82.382 -12.272 -39.064 1 0 ? O4' ADP 301 A 1 HETATM 13 C C3' ADP . . . G 2 82.547 -10.492 -37.485 1 0 ? C3' ADP 301 A 1 HETATM 14 O O3' ADP . . . G 2 81.993 -9.194 -37.718 1 0 ? O3' ADP 301 A 1 HETATM 15 C C2' ADP . . . G 2 81.462 -11.444 -37.024 1 0 ? C2' ADP 301 A 1 HETATM 16 O O2' ADP . . . G 2 80.206 -10.763 -36.958 1 0 ? O2' ADP 301 A 1 HETATM 17 C C1' ADP . . . G 2 81.399 -12.553 -38.063 1 0 ? C1' ADP 301 A 1 HETATM 18 N N9 ADP . . . G 2 81.699 -13.858 -37.421 1 0 ? N9 ADP 301 A 1 HETATM 19 C C8 ADP . . . G 2 80.847 -14.578 -36.667 1 0 ? C8 ADP 301 A 1 HETATM 20 N N7 ADP . . . G 2 81.429 -15.723 -36.228 1 0 ? N7 ADP 301 A 1 HETATM 21 C C5 ADP . . . G 2 82.686 -15.747 -36.709 1 0 ? C5 ADP 301 A 1 HETATM 22 C C6 ADP . . . G 2 83.843 -16.67 -36.628 1 0 ? C6 ADP 301 A 1 HETATM 23 N N6 ADP . . . G 2 83.769 -17.826 -35.925 1 0 ? N6 ADP 301 A 1 HETATM 24 N N1 ADP . . . G 2 84.974 -16.318 -37.278 1 0 ? N1 ADP 301 A 1 HETATM 25 C C2 ADP . . . G 2 85.06 -15.172 -37.979 1 0 ? C2 ADP 301 A 1 HETATM 26 N N3 ADP . . . G 2 84.051 -14.29 -38.095 1 0 ? N3 ADP 301 A 1 HETATM 27 C C4 ADP . . . G 2 82.859 -14.516 -37.494 1 0 ? C4 ADP 301 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 27 #