data_7O40
#
_model_server_result.job_id            P2Tjbwov1ciONW3xejK6WA 
_model_server_result.datetime_utc      '2025-09-04 15:57:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7o40 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    7O40 
#
_exptl.entry_id    7O40 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7O40 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7O40 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        'UCSF CHIMERA 1.14_b42094.' 
_pdbx_struct_assembly.oligomeric_details    102-meric 
_pdbx_struct_assembly.oligomeric_count      102 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? 0.932472 -0.361242 0 0.361242 0.932472 0 0 0 1 0 0 0 
3 'point symmetry operation' ? ? 0.739009 -0.673696 0 0.673696 0.739009 0 0 0 1 0 0 0 
4 'point symmetry operation' ? ? 0.445738 -0.895163 0 0.895163 0.445738 0 0 0 1 0 0 0 
5 'point symmetry operation' ? ? 0.092268 -0.995734 0 0.995734 0.092268 0 0 0 1 0 0 0 
6 'point symmetry operation' ? ? -0.273663 -0.961826 0 0.961826 -0.273663 0 0 0 1 0 0 0 
7 'point symmetry operation' ? ? -0.602635 -0.798017 0 0.798017 -0.602635 0 0 0 1 0 0 0 
8 'point symmetry operation' ? ? -0.850217 -0.526432 0 0.526432 -0.850217 0 0 0 1 0 0 0 
9 'point symmetry operation' ? ? -0.982973 -0.18375 0 0.18375 -0.982973 0 0 0 1 0 0 0 
10 'point symmetry operation' ? ? -0.982973 0.18375 0 -0.18375 -0.982973 0 0 0 1 0 0 0 
11 'point symmetry operation' ? ? -0.850217 0.526432 0 -0.526432 -0.850217 0 0 0 1 0 0 0 
12 'point symmetry operation' ? ? -0.602635 0.798017 0 -0.798017 -0.602635 0 0 0 1 0 0 0 
13 'point symmetry operation' ? ? -0.273663 0.961826 0 -0.961826 -0.273663 0 0 0 1 0 0 0 
14 'point symmetry operation' ? ? 0.092268 0.995734 0 -0.995734 0.092268 0 0 0 1 0 0 0 
15 'point symmetry operation' ? ? 0.445738 0.895163 0 -0.895163 0.445738 0 0 0 1 0 0 0 
16 'point symmetry operation' ? ? 0.739009 0.673696 0 -0.673696 0.739009 0 0 0 1 0 0 0 
17 'point symmetry operation' ? ? 0.932472 0.361242 0 -0.361242 0.932472 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     7O40 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          G 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           ADP 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      301 
_pdbx_nonpoly_scheme.auth_seq_num     660 
_pdbx_nonpoly_scheme.pdb_mon_id       ADP 
_pdbx_nonpoly_scheme.auth_mon_id      ADP 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . G 2 80.88 -75.031 -60.381 1 0 ? PB ADP 301 A 1 
HETATM 2 O O1B ADP . . . G 2 81.414 -74.263 -61.566 1 0 ? O1B ADP 301 A 1 
HETATM 3 O O2B ADP . . . G 2 80.586 -76.485 -60.662 1 0 ? O2B ADP 301 A 1 
HETATM 4 O O3B ADP . . . G 2 81.625 -74.783 -59.091 1 0 ? O3B ADP 301 A 1 
HETATM 5 P PA ADP . . . G 2 79.289 -72.847 -59.665 1 0 ? PA ADP 301 A 1 
HETATM 6 O O1A ADP . . . G 2 78.901 -72.029 -60.873 1 0 ? O1A ADP 301 A 1 
HETATM 7 O O2A ADP . . . G 2 80.517 -72.477 -58.868 1 0 ? O2A ADP 301 A 1 
HETATM 8 O O3A ADP . . . G 2 79.43 -74.385 -60.121 1 0 ? O3A ADP 301 A 1 
HETATM 9 O O5' ADP . . . G 2 78.031 -72.891 -58.662 1 0 ? O5' ADP 301 A 1 
HETATM 10 C C5' ADP . . . G 2 76.767 -73.378 -59.107 1 0 ? C5' ADP 301 A 1 
HETATM 11 C C4' ADP . . . G 2 75.78 -72.222 -59.198 1 0 ? C4' ADP 301 A 1 
HETATM 12 O O4' ADP . . . G 2 74.47 -72.725 -59.472 1 0 ? O4' ADP 301 A 1 
HETATM 13 C C3' ADP . . . G 2 75.717 -71.447 -57.891 1 0 ? C3' ADP 301 A 1 
HETATM 14 O O3' ADP . . . G 2 76.081 -70.081 -58.113 1 0 ? O3' ADP 301 A 1 
HETATM 15 C C2' ADP . . . G 2 74.28 -71.53 -57.417 1 0 ? C2' ADP 301 A 1 
HETATM 16 O O2' ADP . . . G 2 73.716 -70.219 -57.33 1 0 ? O2' ADP 301 A 1 
HETATM 17 C C1' ADP . . . G 2 73.534 -72.35 -58.458 1 0 ? C1' ADP 301 A 1 
HETATM 18 N N9 ADP . . . G 2 72.968 -73.567 -57.824 1 0 ? N9 ADP 301 A 1 
HETATM 19 C C8 ADP . . . G 2 71.862 -73.614 -57.058 1 0 ? C8 ADP 301 A 1 
HETATM 20 N N7 ADP . . . G 2 71.614 -74.88 -56.633 1 0 ? N7 ADP 301 A 1 
HETATM 21 C C5 ADP . . . G 2 72.58 -75.67 -57.134 1 0 ? C5 ADP 301 A 1 
HETATM 22 C C6 ADP . . . G 2 72.918 -77.112 -57.074 1 0 ? C6 ADP 301 A 1 
HETATM 23 N N6 ADP . . . G 2 72.151 -77.983 -56.373 1 0 ? N6 ADP 301 A 1 
HETATM 24 N N1 ADP . . . G 2 74.017 -77.53 -57.741 1 0 ? N1 ADP 301 A 1 
HETATM 25 C C2 ADP . . . G 2 74.786 -76.675 -58.44 1 0 ? C2 ADP 301 A 1 
HETATM 26 N N3 ADP . . . G 2 74.539 -75.356 -58.538 1 0 ? N3 ADP 301 A 1 
HETATM 27 C C4 ADP . . . G 2 73.47 -74.801 -57.918 1 0 ? C4 ADP 301 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#