data_7O49 # _model_server_result.job_id VKZPATYy3erxL4B8Qua4uQ _model_server_result.datetime_utc '2024-11-17 12:49:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o49 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":801}' # _entry.id 7O49 # _exptl.entry_id 7O49 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7O49 _cell.length_a 311.862 _cell.length_b 197.148 _cell.length_c 221.596 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O49 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 ? monomeric 1 author_defined_assembly 7 ? monomeric 1 author_defined_assembly 8 ? monomeric 1 author_defined_assembly 9 ? monomeric 1 author_defined_assembly 10 ? monomeric 1 author_defined_assembly 11 ? monomeric 1 author_defined_assembly 12 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,M,N,OA 1 1 B,O,P,PA 2 1 C,Q,R,S,QA 3 1 D,T,U,V,RA 4 1 E,W,X,Y,SA 5 1 F,Z,AA,BA,TA 6 1 G,CA,DA,UA 7 1 H,EA,FA,GA,VA 8 1 I,HA,IA,WA 9 1 J,JA,KA,LA,XA 10 1 K,MA,YA 11 1 L,NA,ZA 12 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 T N N ? 2 W N N ? 2 Z N N ? 2 CA N N ? 2 EA N N ? 2 HA N N ? 2 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 279 A ASP 342 1_555 N CD CD . A CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc2 B NE2 HIS 277 B HIS 340 1_555 P CD CD . B CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc3 B OD2 ASP 279 B ASP 342 1_555 P CD CD . B CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc4 C NE2 HIS 277 C HIS 340 1_555 S CD CD . C CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc5 C OD2 ASP 279 C ASP 342 1_555 S CD CD . C CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc6 S CD CD . C CD 803 1_555 QA O HOH . C HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc7 D NE2 HIS 277 D HIS 340 1_555 V CD CD . D CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc8 D OD2 ASP 279 D ASP 342 1_555 V CD CD . D CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc9 E OD1 ASP 279 E ASP 342 1_555 Y CD CD . E CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc10 F OD2 ASP 279 F ASP 342 1_555 BA CD CD . F CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc11 BA CD CD . F CD 803 1_555 TA O HOH . F HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc12 G OD2 ASP 279 G ASP 342 1_555 DA CD CD . G CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc13 I NE2 HIS 277 I HIS 340 1_555 IA CD CD . I CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc14 I OD2 ASP 279 I ASP 342 1_555 IA CD CD . I CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc15 I NH2 ARG 284 I ARG 347 1_555 IA CD CD . I CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc16 J NE2 HIS 277 J HIS 340 1_555 LA CD CD . J CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc17 J OD2 ASP 279 J ASP 342 1_555 LA CD CD . J CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 70 n n N1 C6 EPE sing 71 n n N1 C9 EPE sing 72 n n C2 C3 EPE sing 73 n n C2 H21 EPE sing 74 n n C2 H22 EPE sing 75 n n C3 N4 EPE sing 76 n n C3 H31 EPE sing 77 n n C3 H32 EPE sing 78 n n N4 C5 EPE sing 79 n n N4 C7 EPE sing 80 n n C5 C6 EPE sing 81 n n C5 H51 EPE sing 82 n n C5 H52 EPE sing 83 n n C6 H61 EPE sing 84 n n C6 H62 EPE sing 85 n n C7 C8 EPE sing 86 n n C7 H71 EPE sing 87 n n C7 H72 EPE sing 88 n n C8 O8 EPE sing 89 n n C8 H81 EPE sing 90 n n C8 H82 EPE sing 91 n n O8 HO8 EPE sing 92 n n C9 C10 EPE sing 93 n n C9 H91 EPE sing 94 n n C9 H92 EPE sing 95 n n C10 S EPE sing 96 n n C10 H101 EPE sing 97 n n C10 H102 EPE sing 98 n n S O1S EPE doub 99 n n S O2S EPE doub 100 n n S O3S EPE sing 101 n n O3S HOS3 EPE sing 102 n n # _atom_sites.entry_id 7O49 _atom_sites.fract_transf_matrix[1][1] 0.003207 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 EPE A 1 801 601 EPE EPE . N 3 CD A 1 802 5 CD CD . O 2 EPE B 1 801 601 EPE EPE . P 3 CD B 1 802 14 CD CD . Q 2 EPE C 1 801 601 EPE EPE . R 4 CL C 1 802 6 CL CL . S 3 CD C 1 803 10 CD CD . T 2 EPE D 1 801 601 EPE EPE . U 4 CL D 1 802 8 CL CL . V 3 CD D 1 803 12 CD CD . W 2 EPE E 1 801 601 EPE EPE . X 4 CL E 1 802 15 CL CL . Y 3 CD E 1 803 7 CD CD . Z 2 EPE F 1 801 601 EPE EPE . AA 4 CL F 1 802 14 CL CL . BA 3 CD F 1 803 8 CD CD . CA 2 EPE G 1 801 601 EPE EPE . DA 3 CD G 1 802 6 CD CD . EA 2 EPE H 1 801 601 EPE EPE . FA 4 CL H 1 802 5 CL CL . GA 3 CD H 1 803 15 CD CD . HA 2 EPE I 1 801 601 EPE EPE . IA 3 CD I 1 802 13 CD CD . JA 2 EPE J 1 801 601 EPE EPE . KA 4 CL J 1 802 7 CL CL . LA 3 CD J 1 803 9 CD CD . MA 4 CL K 1 801 16 CL CL . NA 4 CL L 1 801 17 CL CL . OA 5 HOH A 1 901 36 HOH HOH . OA 5 HOH A 2 902 6 HOH HOH . OA 5 HOH A 3 903 45 HOH HOH . PA 5 HOH B 1 901 24 HOH HOH . PA 5 HOH B 2 902 3 HOH HOH . PA 5 HOH B 3 903 43 HOH HOH . QA 5 HOH C 1 901 13 HOH HOH . QA 5 HOH C 2 902 39 HOH HOH . QA 5 HOH C 3 903 30 HOH HOH . QA 5 HOH C 4 904 22 HOH HOH . QA 5 HOH C 5 905 9 HOH HOH . QA 5 HOH C 6 906 25 HOH HOH . RA 5 HOH D 1 901 34 HOH HOH . RA 5 HOH D 2 902 29 HOH HOH . RA 5 HOH D 3 903 4 HOH HOH . SA 5 HOH E 1 901 20 HOH HOH . SA 5 HOH E 2 902 26 HOH HOH . SA 5 HOH E 3 903 48 HOH HOH . SA 5 HOH E 4 904 35 HOH HOH . SA 5 HOH E 5 905 47 HOH HOH . SA 5 HOH E 6 906 37 HOH HOH . SA 5 HOH E 7 907 2 HOH HOH . TA 5 HOH F 1 901 42 HOH HOH . TA 5 HOH F 2 902 32 HOH HOH . TA 5 HOH F 3 903 31 HOH HOH . TA 5 HOH F 4 904 41 HOH HOH . TA 5 HOH F 5 905 23 HOH HOH . TA 5 HOH F 6 906 14 HOH HOH . TA 5 HOH F 7 907 8 HOH HOH . TA 5 HOH F 8 908 38 HOH HOH . UA 5 HOH G 1 901 21 HOH HOH . UA 5 HOH G 2 902 12 HOH HOH . UA 5 HOH G 3 903 1 HOH HOH . UA 5 HOH G 4 904 44 HOH HOH . UA 5 HOH G 5 905 49 HOH HOH . VA 5 HOH H 1 901 18 HOH HOH . VA 5 HOH H 2 902 52 HOH HOH . VA 5 HOH H 3 903 54 HOH HOH . WA 5 HOH I 1 901 19 HOH HOH . WA 5 HOH I 2 902 40 HOH HOH . WA 5 HOH I 3 903 10 HOH HOH . WA 5 HOH I 4 904 15 HOH HOH . XA 5 HOH J 1 901 28 HOH HOH . XA 5 HOH J 2 902 27 HOH HOH . XA 5 HOH J 3 903 5 HOH HOH . XA 5 HOH J 4 904 53 HOH HOH . YA 5 HOH K 1 901 33 HOH HOH . YA 5 HOH K 2 902 51 HOH HOH . YA 5 HOH K 3 903 7 HOH HOH . ZA 5 HOH L 1 901 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . HA 2 -113.491 72.489 -112.808 1 105.21 ? N1 EPE 801 I 1 HETATM 2 C C2 EPE . . . HA 2 -114.362 73.646 -112.557 1 102.64 ? C2 EPE 801 I 1 HETATM 3 C C3 EPE . . . HA 2 -115.452 73.294 -111.565 1 110.14 ? C3 EPE 801 I 1 HETATM 4 N N4 EPE . . . HA 2 -116.282 72.163 -112.031 1 111.63 ? N4 EPE 801 I 1 HETATM 5 C C5 EPE . . . HA 2 -115.401 71.005 -112.248 1 113.73 ? C5 EPE 801 I 1 HETATM 6 C C6 EPE . . . HA 2 -114.328 71.355 -113.253 1 113.26 ? C6 EPE 801 I 1 HETATM 7 C C7 EPE . . . HA 2 -117.465 71.919 -111.181 1 97.48 ? C7 EPE 801 I 1 HETATM 8 C C8 EPE . . . HA 2 -117.702 70.489 -110.717 1 89.77 ? C8 EPE 801 I 1 HETATM 9 O O8 EPE . . . HA 2 -118.947 70.353 -110.058 1 73.85 ? O8 EPE 801 I 1 HETATM 10 C C9 EPE . . . HA 2 -112.355 72.796 -113.73 1 119.71 ? C9 EPE 801 I 1 HETATM 11 C C10 EPE . . . HA 2 -112.578 72.545 -115.231 1 145.04 ? C10 EPE 801 I 1 HETATM 12 S S EPE . . . HA 2 -111.254 71.797 -116.166 1 167.14 ? S EPE 801 I 1 HETATM 13 O O1S EPE . . . HA 2 -111.776 71.511 -117.474 1 154.32 ? O1S EPE 801 I 1 HETATM 14 O O2S EPE . . . HA 2 -110.131 72.686 -116.072 1 179.36 ? O2S EPE 801 I 1 HETATM 15 O O3S EPE . . . HA 2 -110.898 70.438 -115.497 1 155.3 ? O3S EPE 801 I 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #