data_7O49 # _model_server_result.job_id vRAztK_h90E2-fqimMAQ-Q _model_server_result.datetime_utc '2024-11-17 12:42:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o49 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":802}' # _entry.id 7O49 # _exptl.entry_id 7O49 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7O49 _cell.length_a 311.862 _cell.length_b 197.148 _cell.length_c 221.596 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O49 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 ? monomeric 1 author_defined_assembly 7 ? monomeric 1 author_defined_assembly 8 ? monomeric 1 author_defined_assembly 9 ? monomeric 1 author_defined_assembly 10 ? monomeric 1 author_defined_assembly 11 ? monomeric 1 author_defined_assembly 12 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,M,N,OA 1 1 B,O,P,PA 2 1 C,Q,R,S,QA 3 1 D,T,U,V,RA 4 1 E,W,X,Y,SA 5 1 F,Z,AA,BA,TA 6 1 G,CA,DA,UA 7 1 H,EA,FA,GA,VA 8 1 I,HA,IA,WA 9 1 J,JA,KA,LA,XA 10 1 K,MA,YA 11 1 L,NA,ZA 12 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 N N N ? 3 P N N ? 3 S N N ? 3 V N N ? 3 Y N N ? 3 BA N N ? 3 DA N N ? 3 GA N N ? 3 IA N N ? 3 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 279 A ASP 342 1_555 N CD CD . A CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc2 B NE2 HIS 277 B HIS 340 1_555 P CD CD . B CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc3 B OD2 ASP 279 B ASP 342 1_555 P CD CD . B CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc4 C NE2 HIS 277 C HIS 340 1_555 S CD CD . C CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc5 C OD2 ASP 279 C ASP 342 1_555 S CD CD . C CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc6 S CD CD . C CD 803 1_555 QA O HOH . C HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc7 D NE2 HIS 277 D HIS 340 1_555 V CD CD . D CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc8 D OD2 ASP 279 D ASP 342 1_555 V CD CD . D CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc9 E OD1 ASP 279 E ASP 342 1_555 Y CD CD . E CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc10 F OD2 ASP 279 F ASP 342 1_555 BA CD CD . F CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc11 BA CD CD . F CD 803 1_555 TA O HOH . F HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc12 G OD2 ASP 279 G ASP 342 1_555 DA CD CD . G CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc13 I NE2 HIS 277 I HIS 340 1_555 IA CD CD . I CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc14 I OD2 ASP 279 I ASP 342 1_555 IA CD CD . I CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc15 I NH2 ARG 284 I ARG 347 1_555 IA CD CD . I CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc16 J NE2 HIS 277 J HIS 340 1_555 LA CD CD . J CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc17 J OD2 ASP 279 J ASP 342 1_555 LA CD CD . J CD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7O49 _atom_sites.fract_transf_matrix[1][1] 0.003207 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 EPE A 1 801 601 EPE EPE . N 3 CD A 1 802 5 CD CD . O 2 EPE B 1 801 601 EPE EPE . P 3 CD B 1 802 14 CD CD . Q 2 EPE C 1 801 601 EPE EPE . R 4 CL C 1 802 6 CL CL . S 3 CD C 1 803 10 CD CD . T 2 EPE D 1 801 601 EPE EPE . U 4 CL D 1 802 8 CL CL . V 3 CD D 1 803 12 CD CD . W 2 EPE E 1 801 601 EPE EPE . X 4 CL E 1 802 15 CL CL . Y 3 CD E 1 803 7 CD CD . Z 2 EPE F 1 801 601 EPE EPE . AA 4 CL F 1 802 14 CL CL . BA 3 CD F 1 803 8 CD CD . CA 2 EPE G 1 801 601 EPE EPE . DA 3 CD G 1 802 6 CD CD . EA 2 EPE H 1 801 601 EPE EPE . FA 4 CL H 1 802 5 CL CL . GA 3 CD H 1 803 15 CD CD . HA 2 EPE I 1 801 601 EPE EPE . IA 3 CD I 1 802 13 CD CD . JA 2 EPE J 1 801 601 EPE EPE . KA 4 CL J 1 802 7 CL CL . LA 3 CD J 1 803 9 CD CD . MA 4 CL K 1 801 16 CL CL . NA 4 CL L 1 801 17 CL CL . OA 5 HOH A 1 901 36 HOH HOH . OA 5 HOH A 2 902 6 HOH HOH . OA 5 HOH A 3 903 45 HOH HOH . PA 5 HOH B 1 901 24 HOH HOH . PA 5 HOH B 2 902 3 HOH HOH . PA 5 HOH B 3 903 43 HOH HOH . QA 5 HOH C 1 901 13 HOH HOH . QA 5 HOH C 2 902 39 HOH HOH . QA 5 HOH C 3 903 30 HOH HOH . QA 5 HOH C 4 904 22 HOH HOH . QA 5 HOH C 5 905 9 HOH HOH . QA 5 HOH C 6 906 25 HOH HOH . RA 5 HOH D 1 901 34 HOH HOH . RA 5 HOH D 2 902 29 HOH HOH . RA 5 HOH D 3 903 4 HOH HOH . SA 5 HOH E 1 901 20 HOH HOH . SA 5 HOH E 2 902 26 HOH HOH . SA 5 HOH E 3 903 48 HOH HOH . SA 5 HOH E 4 904 35 HOH HOH . SA 5 HOH E 5 905 47 HOH HOH . SA 5 HOH E 6 906 37 HOH HOH . SA 5 HOH E 7 907 2 HOH HOH . TA 5 HOH F 1 901 42 HOH HOH . TA 5 HOH F 2 902 32 HOH HOH . TA 5 HOH F 3 903 31 HOH HOH . TA 5 HOH F 4 904 41 HOH HOH . TA 5 HOH F 5 905 23 HOH HOH . TA 5 HOH F 6 906 14 HOH HOH . TA 5 HOH F 7 907 8 HOH HOH . TA 5 HOH F 8 908 38 HOH HOH . UA 5 HOH G 1 901 21 HOH HOH . UA 5 HOH G 2 902 12 HOH HOH . UA 5 HOH G 3 903 1 HOH HOH . UA 5 HOH G 4 904 44 HOH HOH . UA 5 HOH G 5 905 49 HOH HOH . VA 5 HOH H 1 901 18 HOH HOH . VA 5 HOH H 2 902 52 HOH HOH . VA 5 HOH H 3 903 54 HOH HOH . WA 5 HOH I 1 901 19 HOH HOH . WA 5 HOH I 2 902 40 HOH HOH . WA 5 HOH I 3 903 10 HOH HOH . WA 5 HOH I 4 904 15 HOH HOH . XA 5 HOH J 1 901 28 HOH HOH . XA 5 HOH J 2 902 27 HOH HOH . XA 5 HOH J 3 903 5 HOH HOH . XA 5 HOH J 4 904 53 HOH HOH . YA 5 HOH K 1 901 33 HOH HOH . YA 5 HOH K 2 902 51 HOH HOH . YA 5 HOH K 3 903 7 HOH HOH . ZA 5 HOH L 1 901 50 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id DA _atom_site.label_entity_id 3 _atom_site.Cartn_x -78.732 _atom_site.Cartn_y 69.707 _atom_site.Cartn_z -49.312 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 108.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 802 _atom_site.auth_asym_id G _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 133 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #