data_7O4A # _model_server_result.job_id M-CujIJCR9Irx5NQn9AVJg _model_server_result.datetime_utc '2024-10-11 11:23:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 7O4A # _exptl.entry_id 7O4A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 535.57 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'Hydrolyzed piperacillin' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7O4A _cell.length_a 178.688 _cell.length_b 178.688 _cell.length_c 223.652 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 251 AAA SER 314 1_555 C C YPP . AAA YPP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.509 ? covale ? covale2 B OG SER 251 BBB SER 314 1_555 D C YPP . BBB YPP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.521 ? # _chem_comp.formula 'C23 H29 N5 O8 S' _chem_comp.formula_weight 535.57 _chem_comp.id YPP _chem_comp.mon_nstd_flag . _chem_comp.name 'Hydrolyzed piperacillin' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R,4S)-2-[(R)-carboxy{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O YPP doub 361 n n C CA YPP sing 362 n n C OXT YPP sing 363 n n N CA YPP sing 364 n n N CAP YPP sing 365 n n CA CB YPP sing 366 n n CB NAE YPP sing 367 n n CB SAI YPP sing 368 n n NAE CAG YPP sing 369 n n CAG CAH YPP sing 370 n n CAG CAJ YPP sing 371 n n CAH SAI YPP sing 372 n n CAH CAM YPP sing 373 n n CAH CAN YPP sing 374 n n CAJ OAK YPP doub 375 n n CAJ OAL YPP sing 376 n n CAP OAQ YPP doub 377 n n CAP CAR YPP sing 378 n n CAR CAS YPP sing 379 n n CAR NAY YPP sing 380 n n CAS CAT YPP doub 381 n y CAS CAX YPP sing 382 n y CAT CAU YPP sing 383 n y CAU CAV YPP doub 384 n y CAV CAW YPP sing 385 n y CAW CAX YPP doub 386 n y NAY CAZ YPP sing 387 n n CAZ OBA YPP doub 388 n n CAZ NBB YPP sing 389 n n NBB CBC YPP sing 390 n n NBB CBH YPP sing 391 n n CBC CBD YPP sing 392 n n CBD NBE YPP sing 393 n n NBE CBF YPP sing 394 n n NBE CBJ YPP sing 395 n n CBF OBG YPP doub 396 n n CBF CBH YPP sing 397 n n CBH OBI YPP doub 398 n n CBJ CBK YPP sing 399 n n N HN YPP sing 400 n n CA HA YPP sing 401 n n CB HB YPP sing 402 n n NAE HNAE YPP sing 403 n n CAG HAG YPP sing 404 n n CAM HAM YPP sing 405 n n CAM HAMA YPP sing 406 n n CAM HAMB YPP sing 407 n n CAN HAN YPP sing 408 n n CAN HANA YPP sing 409 n n CAN HANB YPP sing 410 n n CAR HAR YPP sing 411 n n CAT HAT YPP sing 412 n n CAU HAU YPP sing 413 n n CAV HAV YPP sing 414 n n CAW HAW YPP sing 415 n n CAX HAX YPP sing 416 n n NAY HNAY YPP sing 417 n n CBC HBC YPP sing 418 n n CBC HBCA YPP sing 419 n n CBD HBD YPP sing 420 n n CBD HBDA YPP sing 421 n n CBJ HBJ YPP sing 422 n n CBJ HBJA YPP sing 423 n n CBK HBK YPP sing 424 n n CBK HBKA YPP sing 425 n n CBK HBKB YPP sing 426 n n OAL HAL YPP sing 427 n n OXT HXT YPP sing 428 n n # _atom_sites.entry_id 7O4A _atom_sites.fract_transf_matrix[1][1] 0.005596 _atom_sites.fract_transf_matrix[1][2] 0.003231 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 YPP AAA 1 801 314 YPP PA4 . D 2 YPP BBB 1 801 314 YPP PA4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C YPP . . . C 2 66.808 -37.434 1.122 1 62.35 0 C YPP 801 AAA 1 HETATM 2 N N YPP . . . C 2 69.23 -37.036 0.739 1 76.45 0 N YPP 801 AAA 1 HETATM 3 O O YPP . . . C 2 66.816 -37.082 2.247 1 54.34 0 O YPP 801 AAA 1 HETATM 4 C CA YPP . . . C 2 67.895 -37.036 0.135 1 72.12 0 CA YPP 801 AAA 1 HETATM 5 C CB YPP . . . C 2 67.779 -38.119 -0.929 1 75.35 0 CB YPP 801 AAA 1 HETATM 6 N NAE YPP . . . C 2 67.134 -39.371 -0.476 1 78.21 0 NAE YPP 801 AAA 1 HETATM 7 C CAG YPP . . . C 2 68.211 -40.33 -0.127 1 76.55 0 CAG YPP 801 AAA 1 HETATM 8 C CAH YPP . . . C 2 69.096 -40.196 -1.373 1 78.28 0 CAH YPP 801 AAA 1 HETATM 9 S SAI YPP . . . C 2 69.364 -38.449 -1.687 1 82.99 0 SAI YPP 801 AAA 1 HETATM 10 C CAJ YPP . . . C 2 67.58 -41.704 0.081 1 74.96 0 CAJ YPP 801 AAA 1 HETATM 11 O OAK YPP . . . C 2 68.343 -42.593 0.308 1 71.49 0 OAK YPP 801 AAA 1 HETATM 12 O OAL YPP . . . C 2 66.381 -41.866 -0.006 1 83.78 0 OAL YPP 801 AAA 1 HETATM 13 C CAM YPP . . . C 2 68.432 -40.933 -2.549 1 76.99 0 CAM YPP 801 AAA 1 HETATM 14 C CAN YPP . . . C 2 70.523 -40.757 -1.195 1 82.21 0 CAN YPP 801 AAA 1 HETATM 15 C CAP YPP . . . C 2 69.871 -35.829 0.729 1 73.69 0 CAP YPP 801 AAA 1 HETATM 16 O OAQ YPP . . . C 2 69.143 -34.783 0.094 1 76.65 0 OAQ YPP 801 AAA 1 HETATM 17 C CAR YPP . . . C 2 71.271 -35.616 1.322 1 70.7 0 CAR YPP 801 AAA 1 HETATM 18 C CAS YPP . . . C 2 72.157 -36.625 0.683 1 67.34 0 CAS YPP 801 AAA 1 HETATM 19 C CAT YPP . . . C 2 72.649 -37.663 1.45 1 72.67 0 CAT YPP 801 AAA 1 HETATM 20 C CAU YPP . . . C 2 73.453 -38.652 0.864 1 73.83 0 CAU YPP 801 AAA 1 HETATM 21 C CAV YPP . . . C 2 73.748 -38.59 -0.49 1 73.05 0 CAV YPP 801 AAA 1 HETATM 22 C CAW YPP . . . C 2 73.246 -37.524 -1.246 1 75.95 0 CAW YPP 801 AAA 1 HETATM 23 C CAX YPP . . . C 2 72.437 -36.544 -0.662 1 69.16 0 CAX YPP 801 AAA 1 HETATM 24 N NAY YPP . . . C 2 71.733 -34.329 0.87 1 76.7 0 NAY YPP 801 AAA 1 HETATM 25 C CAZ YPP . . . C 2 71.511 -33.317 1.755 1 85.72 0 CAZ YPP 801 AAA 1 HETATM 26 O OBA YPP . . . C 2 70.879 -33.801 2.935 1 94.83 0 OBA YPP 801 AAA 1 HETATM 27 N NBB YPP . . . C 2 71.85 -31.976 1.523 1 95.76 0 NBB YPP 801 AAA 1 HETATM 28 C CBC YPP . . . C 2 71.574 -31.059 2.534 1 94.85 0 CBC YPP 801 AAA 1 HETATM 29 C CBD YPP . . . C 2 71.819 -29.698 2.329 1 96.92 0 CBD YPP 801 AAA 1 HETATM 30 N NBE YPP . . . C 2 72.376 -29.414 1.146 1 108.16 0 NBE YPP 801 AAA 1 HETATM 31 C CBF YPP . . . C 2 72.764 -30.213 0.133 1 101.36 0 CBF YPP 801 AAA 1 HETATM 32 O OBG YPP . . . C 2 73.348 -29.857 -1.131 1 89.6 0 OBG YPP 801 AAA 1 HETATM 33 C CBH YPP . . . C 2 72.467 -31.565 0.336 1 103.08 0 CBH YPP 801 AAA 1 HETATM 34 O OBI YPP . . . C 2 72.794 -32.459 -0.729 1 119.24 0 OBI YPP 801 AAA 1 HETATM 35 C CBJ YPP . . . C 2 72.675 -27.971 0.917 1 121.85 0 CBJ YPP 801 AAA 1 HETATM 36 C CBK YPP . . . C 2 71.839 -26.952 1.74 1 116.75 0 CBK YPP 801 AAA 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #