data_7O4A
#
_model_server_result.job_id            7QqkcF7xhSlWkJX9-FFsNA 
_model_server_result.datetime_utc      '2024-10-11 11:20:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7o4a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    7O4A 
#
_exptl.entry_id    7O4A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              535.57 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'Hydrolyzed piperacillin' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7O4A 
_cell.length_a            178.688 
_cell.length_b            178.688 
_cell.length_c            223.652 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7O4A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 251 AAA SER 314 1_555 C C YPP . AAA YPP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.509 ? 
covale ? covale2 B OG SER 251 BBB SER 314 1_555 D C YPP . BBB YPP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.521 ? 
#
_chem_comp.formula           'C23 H29 N5 O8 S' 
_chem_comp.formula_weight    535.57 
_chem_comp.id                YPP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Hydrolyzed piperacillin' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R,4S)-2-[(R)-carboxy{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O YPP doub 361 n n 
C CA YPP sing 362 n n 
C OXT YPP sing 363 n n 
N CA YPP sing 364 n n 
N CAP YPP sing 365 n n 
CA CB YPP sing 366 n n 
CB NAE YPP sing 367 n n 
CB SAI YPP sing 368 n n 
NAE CAG YPP sing 369 n n 
CAG CAH YPP sing 370 n n 
CAG CAJ YPP sing 371 n n 
CAH SAI YPP sing 372 n n 
CAH CAM YPP sing 373 n n 
CAH CAN YPP sing 374 n n 
CAJ OAK YPP doub 375 n n 
CAJ OAL YPP sing 376 n n 
CAP OAQ YPP doub 377 n n 
CAP CAR YPP sing 378 n n 
CAR CAS YPP sing 379 n n 
CAR NAY YPP sing 380 n n 
CAS CAT YPP doub 381 n y 
CAS CAX YPP sing 382 n y 
CAT CAU YPP sing 383 n y 
CAU CAV YPP doub 384 n y 
CAV CAW YPP sing 385 n y 
CAW CAX YPP doub 386 n y 
NAY CAZ YPP sing 387 n n 
CAZ OBA YPP doub 388 n n 
CAZ NBB YPP sing 389 n n 
NBB CBC YPP sing 390 n n 
NBB CBH YPP sing 391 n n 
CBC CBD YPP sing 392 n n 
CBD NBE YPP sing 393 n n 
NBE CBF YPP sing 394 n n 
NBE CBJ YPP sing 395 n n 
CBF OBG YPP doub 396 n n 
CBF CBH YPP sing 397 n n 
CBH OBI YPP doub 398 n n 
CBJ CBK YPP sing 399 n n 
N HN YPP sing 400 n n 
CA HA YPP sing 401 n n 
CB HB YPP sing 402 n n 
NAE HNAE YPP sing 403 n n 
CAG HAG YPP sing 404 n n 
CAM HAM YPP sing 405 n n 
CAM HAMA YPP sing 406 n n 
CAM HAMB YPP sing 407 n n 
CAN HAN YPP sing 408 n n 
CAN HANA YPP sing 409 n n 
CAN HANB YPP sing 410 n n 
CAR HAR YPP sing 411 n n 
CAT HAT YPP sing 412 n n 
CAU HAU YPP sing 413 n n 
CAV HAV YPP sing 414 n n 
CAW HAW YPP sing 415 n n 
CAX HAX YPP sing 416 n n 
NAY HNAY YPP sing 417 n n 
CBC HBC YPP sing 418 n n 
CBC HBCA YPP sing 419 n n 
CBD HBD YPP sing 420 n n 
CBD HBDA YPP sing 421 n n 
CBJ HBJ YPP sing 422 n n 
CBJ HBJA YPP sing 423 n n 
CBK HBK YPP sing 424 n n 
CBK HBKA YPP sing 425 n n 
CBK HBKB YPP sing 426 n n 
OAL HAL YPP sing 427 n n 
OXT HXT YPP sing 428 n n 
#
_atom_sites.entry_id                     7O4A 
_atom_sites.fract_transf_matrix[1][1]    0.005596 
_atom_sites.fract_transf_matrix[1][2]    0.003231 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006462 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004471 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YPP AAA 1 801 314 YPP PA4 . 
D 2 YPP BBB 1 801 314 YPP PA4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C YPP . . . D 2 14.398 -46.843 53.708 1 94.56 0 C YPP 801 BBB 1 
HETATM 2 N N YPP . . . D 2 12.802 -45.66 55.205 1 95.8 0 N YPP 801 BBB 1 
HETATM 3 O O YPP . . . D 2 15.099 -45.894 53.537 1 91.47 0 O YPP 801 BBB 1 
HETATM 4 C CA YPP . . . D 2 13.469 -46.934 54.904 1 97.31 0 CA YPP 801 BBB 1 
HETATM 5 C CB YPP . . . D 2 12.463 -47.978 54.453 1 107.32 0 CB YPP 801 BBB 1 
HETATM 6 N NAE YPP . . . D 2 12.362 -48.156 52.984 1 115.43 0 NAE YPP 801 BBB 1 
HETATM 7 C CAG YPP . . . D 2 11.205 -47.353 52.503 1 118.68 0 CAG YPP 801 BBB 1 
HETATM 8 C CAH YPP . . . D 2 10.152 -47.816 53.524 1 123.28 0 CAH YPP 801 BBB 1 
HETATM 9 S SAI YPP . . . D 2 10.86 -47.657 55.186 1 128.61 0 SAI YPP 801 BBB 1 
HETATM 10 C CAJ YPP . . . D 2 10.915 -47.713 51.034 1 113.08 0 CAJ YPP 801 BBB 1 
HETATM 11 O OAK YPP . . . D 2 11.233 -48.826 50.709 1 109.79 0 OAK YPP 801 BBB 1 
HETATM 12 O OAL YPP . . . D 2 10.401 -46.976 50.2 1 106.45 0 OAL YPP 801 BBB 1 
HETATM 13 C CAM YPP . . . D 2 9.694 -49.259 53.136 1 119.64 0 CAM YPP 801 BBB 1 
HETATM 14 C CAN YPP . . . D 2 8.925 -46.873 53.605 1 120.58 0 CAN YPP 801 BBB 1 
HETATM 15 C CAP YPP . . . D 2 13.098 -45.141 56.44 1 93.66 0 CAP YPP 801 BBB 1 
HETATM 16 O OAQ YPP . . . D 2 13.992 -45.93 57.206 1 114.23 0 OAQ YPP 801 BBB 1 
HETATM 17 C CAR YPP . . . D 2 12.518 -43.817 56.959 1 87.91 0 CAR YPP 801 BBB 1 
HETATM 18 C CAS YPP . . . D 2 11.031 -43.932 56.856 1 88.46 0 CAS YPP 801 BBB 1 
HETATM 19 C CAT YPP . . . D 2 10.377 -43.14 55.916 1 94.07 0 CAT YPP 801 BBB 1 
HETATM 20 C CAU YPP . . . D 2 8.987 -43.247 55.777 1 95.66 0 CAU YPP 801 BBB 1 
HETATM 21 C CAV YPP . . . D 2 8.272 -44.151 56.579 1 101.48 0 CAV YPP 801 BBB 1 
HETATM 22 C CAW YPP . . . D 2 8.964 -44.954 57.514 1 103.16 0 CAW YPP 801 BBB 1 
HETATM 23 C CAX YPP . . . D 2 10.356 -44.851 57.644 1 94.77 0 CAX YPP 801 BBB 1 
HETATM 24 N NAY YPP . . . D 2 13.089 -43.705 58.296 1 87.3 0 NAY YPP 801 BBB 1 
HETATM 25 C CAZ YPP . . . D 2 13.662 -42.498 58.537 1 91.93 0 CAZ YPP 801 BBB 1 
HETATM 26 O OBA YPP . . . D 2 13.447 -41.597 57.456 1 99.64 0 OBA YPP 801 BBB 1 
HETATM 27 N NBB YPP . . . D 2 14.346 -42.178 59.712 1 101.3 0 NBB YPP 801 BBB 1 
HETATM 28 C CBC YPP . . . D 2 14.87 -40.888 59.83 1 113.19 0 CBC YPP 801 BBB 1 
HETATM 29 C CBD YPP . . . D 2 15.962 -40.692 60.717 1 117.13 0 CBD YPP 801 BBB 1 
HETATM 30 N NBE YPP . . . D 2 15.946 -41.557 61.749 1 117.16 0 NBE YPP 801 BBB 1 
HETATM 31 C CBF YPP . . . D 2 15.255 -42.704 61.901 1 100.15 0 CBF YPP 801 BBB 1 
HETATM 32 O OBG YPP . . . D 2 15.276 -43.597 63.008 1 90.21 0 OBG YPP 801 BBB 1 
HETATM 33 C CBH YPP . . . D 2 14.519 -43.088 60.761 1 95.84 0 CBH YPP 801 BBB 1 
HETATM 34 O OBI YPP . . . D 2 14.031 -44.423 60.713 1 93.87 0 OBI YPP 801 BBB 1 
HETATM 35 C CBJ YPP . . . D 2 16.755 -41.168 62.944 1 118.65 0 CBJ YPP 801 BBB 1 
HETATM 36 C CBK YPP . . . D 2 17.848 -40.08 62.726 1 118.13 0 CBK YPP 801 BBB 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           36 
#