data_7O4B # _model_server_result.job_id w2gyBvkw8uiW18de9leELg _model_server_result.datetime_utc '2024-10-11 09:23:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":808}' # _entry.id 7O4B # _exptl.entry_id 7O4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.406 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OPEN FORM - PENICILLIN G' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7O4B _cell.length_a 180.649 _cell.length_b 180.649 _cell.length_c 223.466 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,S 1 1 B,K,L,M,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 251 A SER 314 1_555 J C7 PNM . A PNM 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 B OG SER 251 C SER 314 1_555 R C7 PNM . C PNM 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C16 H20 N2 O4 S' _chem_comp.formula_weight 336.406 _chem_comp.id PNM _chem_comp.mon_nstd_flag . _chem_comp.name 'OPEN FORM - PENICILLIN G' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 C7 PNM doub 267 n n C7 C6 PNM sing 268 n n C7 HC7 PNM sing 269 n n N4 C3 PNM sing 270 n n N4 C5 PNM sing 271 n n N4 H4 PNM sing 272 n n C3 C11 PNM sing 273 n n C3 C2 PNM sing 274 n n C3 HC3 PNM sing 275 n n C11 O13 PNM sing 276 n n C11 O12 PNM doub 277 n n O13 HXT PNM sing 278 n n C2 C10 PNM sing 279 n n C2 C9 PNM sing 280 n n C2 S1 PNM sing 281 n n C10 H101 PNM sing 282 n n C10 H102 PNM sing 283 n n C10 H103 PNM sing 284 n n C9 HC91 PNM sing 285 n n C9 HC92 PNM sing 286 n n C9 HC93 PNM sing 287 n n S1 C5 PNM sing 288 n n C5 C6 PNM sing 289 n n C5 HC5 PNM sing 290 n n C6 N14 PNM sing 291 n n C6 HC6 PNM sing 292 n n N14 C15 PNM sing 293 n n N14 H14 PNM sing 294 n n C15 O16 PNM doub 295 n n C15 C17 PNM sing 296 n n C17 C18 PNM sing 297 n n C17 H171 PNM sing 298 n n C17 H172 PNM sing 299 n n C18 C19 PNM doub 300 n y C18 C23 PNM sing 301 n y C19 C20 PNM sing 302 n y C19 H19 PNM sing 303 n n C20 C21 PNM doub 304 n y C20 H20 PNM sing 305 n n C21 C22 PNM sing 306 n y C21 H21 PNM sing 307 n n C22 C23 PNM doub 308 n y C22 H22 PNM sing 309 n n C23 H23 PNM sing 310 n n # _atom_sites.entry_id 7O4B _atom_sites.fract_transf_matrix[1][1] 0.005536 _atom_sites.fract_transf_matrix[1][2] 0.003196 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CIT A 1 801 601 CIT FLC . D 3 SO4 A 1 802 602 SO4 SO4 . E 2 CIT A 1 803 604 CIT FLC . F 3 SO4 A 1 804 608 SO4 SO4 . G 3 SO4 A 1 805 609 SO4 SO4 . H 3 SO4 A 1 806 610 SO4 SO4 . I 3 SO4 A 1 807 611 SO4 SO4 . J 4 PNM A 1 808 314 PNM PG1 . K 3 SO4 C 1 801 601 SO4 SO4 . L 3 SO4 C 1 802 603 SO4 SO4 . M 3 SO4 C 1 803 604 SO4 SO4 . N 2 CIT C 1 804 605 CIT FLC . O 3 SO4 C 1 805 606 SO4 SO4 . P 3 SO4 C 1 806 607 SO4 SO4 . Q 3 SO4 C 1 807 608 SO4 SO4 . R 4 PNM C 1 808 314 PNM PG1 . S 5 HOH A 1 901 4 HOH HOH . S 5 HOH A 2 902 2 HOH HOH . S 5 HOH A 3 903 32 HOH HOH . S 5 HOH A 4 904 17 HOH HOH . S 5 HOH A 5 905 28 HOH HOH . S 5 HOH A 6 906 39 HOH HOH . S 5 HOH A 7 907 24 HOH HOH . S 5 HOH A 8 908 38 HOH HOH . S 5 HOH A 9 909 31 HOH HOH . S 5 HOH A 10 910 36 HOH HOH . S 5 HOH A 11 911 16 HOH HOH . S 5 HOH A 12 912 15 HOH HOH . S 5 HOH A 13 913 29 HOH HOH . S 5 HOH A 14 914 25 HOH HOH . S 5 HOH A 15 915 19 HOH HOH . S 5 HOH A 16 916 14 HOH HOH . S 5 HOH A 17 917 22 HOH HOH . S 5 HOH A 18 918 13 HOH HOH . S 5 HOH A 19 919 23 HOH HOH . S 5 HOH A 20 920 30 HOH HOH . S 5 HOH A 21 921 43 HOH HOH . S 5 HOH A 22 922 7 HOH HOH . S 5 HOH A 23 923 9 HOH HOH . S 5 HOH A 24 924 37 HOH HOH . S 5 HOH A 25 925 21 HOH HOH . S 5 HOH A 26 926 40 HOH HOH . T 5 HOH C 1 901 11 HOH HOH . T 5 HOH C 2 902 8 HOH HOH . T 5 HOH C 3 903 6 HOH HOH . T 5 HOH C 4 904 26 HOH HOH . T 5 HOH C 5 905 27 HOH HOH . T 5 HOH C 6 906 10 HOH HOH . T 5 HOH C 7 907 41 HOH HOH . T 5 HOH C 8 908 18 HOH HOH . T 5 HOH C 9 909 20 HOH HOH . T 5 HOH C 10 910 35 HOH HOH . T 5 HOH C 11 911 42 HOH HOH . T 5 HOH C 12 912 33 HOH HOH . T 5 HOH C 13 913 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 PNM . . . J 4 -67.668 37.635 2.4 1 38.75 0 O8 PNM 808 A 1 HETATM 2 C C7 PNM . . . J 4 -67.323 37.665 1.242 1 40.27 0 C7 PNM 808 A 1 HETATM 3 N N4 PNM . . . J 4 -68.123 39.944 0.169 1 36.16 0 N4 PNM 808 A 1 HETATM 4 C C3 PNM . . . J 4 -69.159 41.002 0.018 1 43.25 0 C3 PNM 808 A 1 HETATM 5 C C11 PNM . . . J 4 -68.381 42.317 -0.084 1 48.54 0 C11 PNM 808 A 1 HETATM 6 O O13 PNM . . . J 4 -68.905 43.298 0.528 1 38.73 0 O13 PNM 808 A 1 HETATM 7 O O12 PNM . . . J 4 -67.292 42.257 -0.762 1 42.22 0 O12 PNM 808 A 1 HETATM 8 C C2 PNM . . . J 4 -70.066 40.727 -1.256 1 38.12 0 C2 PNM 808 A 1 HETATM 9 C C10 PNM . . . J 4 -69.765 41.584 -2.482 1 33.72 0 C10 PNM 808 A 1 HETATM 10 C C9 PNM . . . J 4 -71.55 40.814 -0.895 1 39.26 0 C9 PNM 808 A 1 HETATM 11 S S1 PNM . . . J 4 -69.76 38.952 -1.711 1 35.25 0 S1 PNM 808 A 1 HETATM 12 C C5 PNM . . . J 4 -68.205 38.805 -0.761 1 36.75 0 C5 PNM 808 A 1 HETATM 13 C C6 PNM . . . J 4 -68.31 37.558 0.096 1 37.8 0 C6 PNM 808 A 1 HETATM 14 N N14 PNM . . . J 4 -69.662 37.416 0.636 1 37.06 0 N14 PNM 808 A 1 HETATM 15 C C15 PNM . . . J 4 -70.465 36.447 0.219 1 41.19 0 C15 PNM 808 A 1 HETATM 16 O O16 PNM . . . J 4 -70.225 35.827 -0.823 1 38.95 0 O16 PNM 808 A 1 HETATM 17 C C17 PNM . . . J 4 -71.732 36.223 1.019 1 41.84 0 C17 PNM 808 A 1 HETATM 18 C C18 PNM . . . J 4 -72.803 37.189 0.548 1 46.52 0 C18 PNM 808 A 1 HETATM 19 C C19 PNM . . . J 4 -73.416 38.054 1.44 1 51.12 0 C19 PNM 808 A 1 HETATM 20 C C20 PNM . . . J 4 -74.401 38.949 1.018 1 51.5 0 C20 PNM 808 A 1 HETATM 21 C C21 PNM . . . J 4 -74.786 38.996 -0.307 1 49.42 0 C21 PNM 808 A 1 HETATM 22 C C22 PNM . . . J 4 -74.179 38.152 -1.212 1 48.12 0 C22 PNM 808 A 1 HETATM 23 C C23 PNM . . . J 4 -73.192 37.265 -0.788 1 47.51 0 C23 PNM 808 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #