data_7O4B
#
_model_server_result.job_id            lOK22hMc6w4396IQt9vpog 
_model_server_result.datetime_utc      '2024-11-22 13:54:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7o4b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":808}' 
#
_entry.id    7O4B 
#
_exptl.entry_id    7O4B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              336.406 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OPEN FORM - PENICILLIN G' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7O4B 
_cell.length_a            180.649 
_cell.length_b            180.649 
_cell.length_c            223.466 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7O4B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,S 1 1 
B,K,L,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 251 A SER 314 1_555 J C7 PNM . A PNM 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale2 B OG SER 251 C SER 314 1_555 R C7 PNM . C PNM 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C16 H20 N2 O4 S' 
_chem_comp.formula_weight    336.406 
_chem_comp.id                PNM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OPEN FORM - PENICILLIN G' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O8 C7 PNM doub 267 n n 
C7 C6 PNM sing 268 n n 
C7 HC7 PNM sing 269 n n 
N4 C3 PNM sing 270 n n 
N4 C5 PNM sing 271 n n 
N4 H4 PNM sing 272 n n 
C3 C11 PNM sing 273 n n 
C3 C2 PNM sing 274 n n 
C3 HC3 PNM sing 275 n n 
C11 O13 PNM sing 276 n n 
C11 O12 PNM doub 277 n n 
O13 HXT PNM sing 278 n n 
C2 C10 PNM sing 279 n n 
C2 C9 PNM sing 280 n n 
C2 S1 PNM sing 281 n n 
C10 H101 PNM sing 282 n n 
C10 H102 PNM sing 283 n n 
C10 H103 PNM sing 284 n n 
C9 HC91 PNM sing 285 n n 
C9 HC92 PNM sing 286 n n 
C9 HC93 PNM sing 287 n n 
S1 C5 PNM sing 288 n n 
C5 C6 PNM sing 289 n n 
C5 HC5 PNM sing 290 n n 
C6 N14 PNM sing 291 n n 
C6 HC6 PNM sing 292 n n 
N14 C15 PNM sing 293 n n 
N14 H14 PNM sing 294 n n 
C15 O16 PNM doub 295 n n 
C15 C17 PNM sing 296 n n 
C17 C18 PNM sing 297 n n 
C17 H171 PNM sing 298 n n 
C17 H172 PNM sing 299 n n 
C18 C19 PNM doub 300 n y 
C18 C23 PNM sing 301 n y 
C19 C20 PNM sing 302 n y 
C19 H19 PNM sing 303 n n 
C20 C21 PNM doub 304 n y 
C20 H20 PNM sing 305 n n 
C21 C22 PNM sing 306 n y 
C21 H21 PNM sing 307 n n 
C22 C23 PNM doub 308 n y 
C22 H22 PNM sing 309 n n 
C23 H23 PNM sing 310 n n 
#
_atom_sites.entry_id                     7O4B 
_atom_sites.fract_transf_matrix[1][1]    0.005536 
_atom_sites.fract_transf_matrix[1][2]    0.003196 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006392 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004475 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CIT A 1 801 601 CIT FLC . 
D 3 SO4 A 1 802 602 SO4 SO4 . 
E 2 CIT A 1 803 604 CIT FLC . 
F 3 SO4 A 1 804 608 SO4 SO4 . 
G 3 SO4 A 1 805 609 SO4 SO4 . 
H 3 SO4 A 1 806 610 SO4 SO4 . 
I 3 SO4 A 1 807 611 SO4 SO4 . 
J 4 PNM A 1 808 314 PNM PG1 . 
K 3 SO4 C 1 801 601 SO4 SO4 . 
L 3 SO4 C 1 802 603 SO4 SO4 . 
M 3 SO4 C 1 803 604 SO4 SO4 . 
N 2 CIT C 1 804 605 CIT FLC . 
O 3 SO4 C 1 805 606 SO4 SO4 . 
P 3 SO4 C 1 806 607 SO4 SO4 . 
Q 3 SO4 C 1 807 608 SO4 SO4 . 
R 4 PNM C 1 808 314 PNM PG1 . 
S 5 HOH A 1 901 4 HOH HOH . 
S 5 HOH A 2 902 2 HOH HOH . 
S 5 HOH A 3 903 32 HOH HOH . 
S 5 HOH A 4 904 17 HOH HOH . 
S 5 HOH A 5 905 28 HOH HOH . 
S 5 HOH A 6 906 39 HOH HOH . 
S 5 HOH A 7 907 24 HOH HOH . 
S 5 HOH A 8 908 38 HOH HOH . 
S 5 HOH A 9 909 31 HOH HOH . 
S 5 HOH A 10 910 36 HOH HOH . 
S 5 HOH A 11 911 16 HOH HOH . 
S 5 HOH A 12 912 15 HOH HOH . 
S 5 HOH A 13 913 29 HOH HOH . 
S 5 HOH A 14 914 25 HOH HOH . 
S 5 HOH A 15 915 19 HOH HOH . 
S 5 HOH A 16 916 14 HOH HOH . 
S 5 HOH A 17 917 22 HOH HOH . 
S 5 HOH A 18 918 13 HOH HOH . 
S 5 HOH A 19 919 23 HOH HOH . 
S 5 HOH A 20 920 30 HOH HOH . 
S 5 HOH A 21 921 43 HOH HOH . 
S 5 HOH A 22 922 7 HOH HOH . 
S 5 HOH A 23 923 9 HOH HOH . 
S 5 HOH A 24 924 37 HOH HOH . 
S 5 HOH A 25 925 21 HOH HOH . 
S 5 HOH A 26 926 40 HOH HOH . 
T 5 HOH C 1 901 11 HOH HOH . 
T 5 HOH C 2 902 8 HOH HOH . 
T 5 HOH C 3 903 6 HOH HOH . 
T 5 HOH C 4 904 26 HOH HOH . 
T 5 HOH C 5 905 27 HOH HOH . 
T 5 HOH C 6 906 10 HOH HOH . 
T 5 HOH C 7 907 41 HOH HOH . 
T 5 HOH C 8 908 18 HOH HOH . 
T 5 HOH C 9 909 20 HOH HOH . 
T 5 HOH C 10 910 35 HOH HOH . 
T 5 HOH C 11 911 42 HOH HOH . 
T 5 HOH C 12 912 33 HOH HOH . 
T 5 HOH C 13 913 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O8 PNM . . . R 4 -15.202 46.866 52.885 1 48.34 0 O8 PNM 808 C 1 
HETATM 2 C C7 PNM . . . R 4 -14.917 48.01 53.132 1 46.68 0 C7 PNM 808 C 1 
HETATM 3 N N4 PNM . . . R 4 -12.453 48.421 52.111 1 35.53 0 N4 PNM 808 C 1 
HETATM 4 C C3 PNM . . . R 4 -11.007 48.335 51.741 1 39.14 0 C3 PNM 808 C 1 
HETATM 5 C C11 PNM . . . R 4 -10.905 49.081 50.404 1 41.76 0 C11 PNM 808 C 1 
HETATM 6 O O13 PNM . . . R 4 -11.592 50.159 50.341 1 40.27 0 O13 PNM 808 C 1 
HETATM 7 O O12 PNM . . . R 4 -10.217 48.537 49.498 1 35.8 0 O12 PNM 808 C 1 
HETATM 8 C C2 PNM . . . R 4 -10.115 48.916 52.919 1 39.21 0 C2 PNM 808 C 1 
HETATM 9 C C10 PNM . . . R 4 -9.161 47.829 53.434 1 42.28 0 C10 PNM 808 C 1 
HETATM 10 C C9 PNM . . . R 4 -9.328 50.159 52.526 1 34.46 0 C9 PNM 808 C 1 
HETATM 11 S S1 PNM . . . R 4 -11.256 49.388 54.325 1 38.29 0 S1 PNM 808 C 1 
HETATM 12 C C5 PNM . . . R 4 -12.777 49.251 53.291 1 38.94 0 C5 PNM 808 C 1 
HETATM 13 C C6 PNM . . . R 4 -13.781 48.402 54.066 1 42.21 0 C6 PNM 808 C 1 
HETATM 14 N N14 PNM . . . R 4 -13.145 47.192 54.587 1 40.04 0 N14 PNM 808 C 1 
HETATM 15 C C15 PNM . . . R 4 -12.952 47.037 55.889 1 46.09 0 C15 PNM 808 C 1 
HETATM 16 O O16 PNM . . . R 4 -13.031 48.003 56.645 1 43.29 0 O16 PNM 808 C 1 
HETATM 17 C C17 PNM . . . R 4 -12.573 45.651 56.393 1 47.73 0 C17 PNM 808 C 1 
HETATM 18 C C18 PNM . . . R 4 -11.073 45.471 56.233 1 50.91 0 C18 PNM 808 C 1 
HETATM 19 C C19 PNM . . . R 4 -10.548 44.462 55.426 1 52.02 0 C19 PNM 808 C 1 
HETATM 20 C C20 PNM . . . R 4 -9.172 44.329 55.253 1 52.81 0 C20 PNM 808 C 1 
HETATM 21 C C21 PNM . . . R 4 -8.303 45.202 55.887 1 52.55 0 C21 PNM 808 C 1 
HETATM 22 C C22 PNM . . . R 4 -8.808 46.193 56.711 1 50.5 0 C22 PNM 808 C 1 
HETATM 23 C C23 PNM . . . R 4 -10.182 46.342 56.863 1 49.85 0 C23 PNM 808 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#