data_7O4W # _model_server_result.job_id lU4xq9Ad-XnWdEHI02DoHA _model_server_result.datetime_utc '2024-12-23 20:24:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 7O4W # _exptl.entry_id 7O4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7O4W _cell.length_a 97.996 _cell.length_b 97.996 _cell.length_c 98.267 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall 'P 31 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 31 1 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_567 x,x-y+1,-z+2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -48.998 84.867025 196.534 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 461 A CYS 461 1_555 A SG CYS 471 A CYS 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? covale ? covale1 A SG CYS 186 A CYS 186 1_555 B CM2 4Y8 . A 4Y8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? covale ? covale2 A SG CYS 201 A CYS 201 1_555 B CM1 4Y8 . A 4Y8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 99 n n C1 C2 EDO sing 100 n n C1 H11 EDO sing 101 n n C1 H12 EDO sing 102 n n O1 HO1 EDO sing 103 n n C2 O2 EDO sing 104 n n C2 H21 EDO sing 105 n n C2 H22 EDO sing 106 n n O2 HO2 EDO sing 107 n n # _atom_sites.entry_id 7O4W _atom_sites.fract_transf_matrix[1][1] 0.010204 _atom_sites.fract_transf_matrix[1][2] 0.005892 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011783 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4Y8 A 1 601 536 4Y8 UNL . C 3 EDO A 1 602 1 EDO EDO . D 3 EDO A 1 603 4 EDO EDO . E 3 EDO A 1 604 5 EDO EDO . F 4 PGE A 1 605 1 PGE PGE . G 4 PGE A 1 606 2 PGE PGE . H 5 ACT A 1 607 1 ACT ACT . I 6 HOH A 1 701 153 HOH HOH . I 6 HOH A 2 702 146 HOH HOH . I 6 HOH A 3 703 124 HOH HOH . I 6 HOH A 4 704 182 HOH HOH . I 6 HOH A 5 705 65 HOH HOH . I 6 HOH A 6 706 74 HOH HOH . I 6 HOH A 7 707 36 HOH HOH . I 6 HOH A 8 708 118 HOH HOH . I 6 HOH A 9 709 123 HOH HOH . I 6 HOH A 10 710 13 HOH HOH . I 6 HOH A 11 711 248 HOH HOH . I 6 HOH A 12 712 126 HOH HOH . I 6 HOH A 13 713 25 HOH HOH . I 6 HOH A 14 714 8 HOH HOH . I 6 HOH A 15 715 210 HOH HOH . I 6 HOH A 16 716 62 HOH HOH . I 6 HOH A 17 717 94 HOH HOH . I 6 HOH A 18 718 247 HOH HOH . I 6 HOH A 19 719 11 HOH HOH . I 6 HOH A 20 720 30 HOH HOH . I 6 HOH A 21 721 58 HOH HOH . I 6 HOH A 22 722 28 HOH HOH . I 6 HOH A 23 723 35 HOH HOH . I 6 HOH A 24 724 127 HOH HOH . I 6 HOH A 25 725 43 HOH HOH . I 6 HOH A 26 726 47 HOH HOH . I 6 HOH A 27 727 138 HOH HOH . I 6 HOH A 28 728 82 HOH HOH . I 6 HOH A 29 729 9 HOH HOH . I 6 HOH A 30 730 3 HOH HOH . I 6 HOH A 31 731 12 HOH HOH . I 6 HOH A 32 732 37 HOH HOH . I 6 HOH A 33 733 125 HOH HOH . I 6 HOH A 34 734 226 HOH HOH . I 6 HOH A 35 735 95 HOH HOH . I 6 HOH A 36 736 2 HOH HOH . I 6 HOH A 37 737 18 HOH HOH . I 6 HOH A 38 738 164 HOH HOH . I 6 HOH A 39 739 22 HOH HOH . I 6 HOH A 40 740 236 HOH HOH . I 6 HOH A 41 741 104 HOH HOH . I 6 HOH A 42 742 73 HOH HOH . I 6 HOH A 43 743 49 HOH HOH . I 6 HOH A 44 744 83 HOH HOH . I 6 HOH A 45 745 29 HOH HOH . I 6 HOH A 46 746 137 HOH HOH . I 6 HOH A 47 747 87 HOH HOH . I 6 HOH A 48 748 20 HOH HOH . I 6 HOH A 49 749 184 HOH HOH . I 6 HOH A 50 750 244 HOH HOH . I 6 HOH A 51 751 5 HOH HOH . I 6 HOH A 52 752 245 HOH HOH . I 6 HOH A 53 753 26 HOH HOH . I 6 HOH A 54 754 14 HOH HOH . I 6 HOH A 55 755 222 HOH HOH . I 6 HOH A 56 756 132 HOH HOH . I 6 HOH A 57 757 15 HOH HOH . I 6 HOH A 58 758 68 HOH HOH . I 6 HOH A 59 759 45 HOH HOH . I 6 HOH A 60 760 46 HOH HOH . I 6 HOH A 61 761 131 HOH HOH . I 6 HOH A 62 762 4 HOH HOH . I 6 HOH A 63 763 10 HOH HOH . I 6 HOH A 64 764 243 HOH HOH . I 6 HOH A 65 765 120 HOH HOH . I 6 HOH A 66 766 42 HOH HOH . I 6 HOH A 67 767 165 HOH HOH . I 6 HOH A 68 768 100 HOH HOH . I 6 HOH A 69 769 84 HOH HOH . I 6 HOH A 70 770 56 HOH HOH . I 6 HOH A 71 771 50 HOH HOH . I 6 HOH A 72 772 6 HOH HOH . I 6 HOH A 73 773 31 HOH HOH . I 6 HOH A 74 774 139 HOH HOH . I 6 HOH A 75 775 38 HOH HOH . I 6 HOH A 76 776 144 HOH HOH . I 6 HOH A 77 777 128 HOH HOH . I 6 HOH A 78 778 133 HOH HOH . I 6 HOH A 79 779 44 HOH HOH . I 6 HOH A 80 780 85 HOH HOH . I 6 HOH A 81 781 130 HOH HOH . I 6 HOH A 82 782 155 HOH HOH . I 6 HOH A 83 783 71 HOH HOH . I 6 HOH A 84 784 59 HOH HOH . I 6 HOH A 85 785 96 HOH HOH . I 6 HOH A 86 786 228 HOH HOH . I 6 HOH A 87 787 34 HOH HOH . I 6 HOH A 88 788 27 HOH HOH . I 6 HOH A 89 789 90 HOH HOH . I 6 HOH A 90 790 57 HOH HOH . I 6 HOH A 91 791 33 HOH HOH . I 6 HOH A 92 792 48 HOH HOH . I 6 HOH A 93 793 19 HOH HOH . I 6 HOH A 94 794 116 HOH HOH . I 6 HOH A 95 795 75 HOH HOH . I 6 HOH A 96 796 53 HOH HOH . I 6 HOH A 97 797 40 HOH HOH . I 6 HOH A 98 798 67 HOH HOH . I 6 HOH A 99 799 41 HOH HOH . I 6 HOH A 100 800 32 HOH HOH . I 6 HOH A 101 801 23 HOH HOH . I 6 HOH A 102 802 110 HOH HOH . I 6 HOH A 103 803 76 HOH HOH . I 6 HOH A 104 804 21 HOH HOH . I 6 HOH A 105 805 229 HOH HOH . I 6 HOH A 106 806 91 HOH HOH . I 6 HOH A 107 807 39 HOH HOH . I 6 HOH A 108 808 235 HOH HOH . I 6 HOH A 109 809 61 HOH HOH . I 6 HOH A 110 810 52 HOH HOH . I 6 HOH A 111 811 77 HOH HOH . I 6 HOH A 112 812 154 HOH HOH . I 6 HOH A 113 813 86 HOH HOH . I 6 HOH A 114 814 206 HOH HOH . I 6 HOH A 115 815 220 HOH HOH . I 6 HOH A 116 816 78 HOH HOH . I 6 HOH A 117 817 145 HOH HOH . I 6 HOH A 118 818 224 HOH HOH . I 6 HOH A 119 819 227 HOH HOH . I 6 HOH A 120 820 105 HOH HOH . I 6 HOH A 121 821 240 HOH HOH . I 6 HOH A 122 822 135 HOH HOH . I 6 HOH A 123 823 79 HOH HOH . I 6 HOH A 124 824 232 HOH HOH . I 6 HOH A 125 825 242 HOH HOH . I 6 HOH A 126 826 60 HOH HOH . I 6 HOH A 127 827 239 HOH HOH . I 6 HOH A 128 828 72 HOH HOH . I 6 HOH A 129 829 187 HOH HOH . I 6 HOH A 130 830 101 HOH HOH . I 6 HOH A 131 831 246 HOH HOH . I 6 HOH A 132 832 142 HOH HOH . I 6 HOH A 133 833 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -34.09 58.094 95.62 0.34 49.16 ? C1 EDO 604 A 1 HETATM 2 O O1 EDO . . . E 3 -33.273 57.218 94.901 1 38.67 ? O1 EDO 604 A 1 HETATM 3 C C2 EDO . . . E 3 -33.291 58.694 96.78 1 38.9 ? C2 EDO 604 A 1 HETATM 4 O O2 EDO . . . E 3 -33.06 60.04 96.668 1 49.27 ? O2 EDO 604 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 1435 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #