data_7O52 # _model_server_result.job_id iY7EOnGWfolPfTkD8x9Snw _model_server_result.datetime_utc '2024-11-22 23:08:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":303}' # _entry.id 7O52 # _exptl.entry_id 7O52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7O52 _cell.length_a 61.478 _cell.length_b 119.719 _cell.length_c 241.672 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 H CYS 22 1_555 A SG CYS 101 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 153 H CYS 140 1_555 A SG CYS 209 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 25 L CYS 23 1_555 B SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 B SG CYS 136 L CYS 134 1_555 B SG CYS 196 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 C SG CYS 27 U CYS 529 1_555 C SG CYS 69 U CYS 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 C SG CYS 114 U CYS 616 1_555 C SG CYS 157 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? covale ? covale1 C ND2 ASN 132 U ASN 634 1_555 I C1 NAG . U NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7O52 _atom_sites.fract_transf_matrix[1][1] 0.016266 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 H 1 301 1 SO4 SO4 . E 4 SO4 H 1 302 3 SO4 SO4 . F 4 SO4 L 1 301 4 SO4 SO4 . G 5 GOL L 1 302 1 GOL GOL . H 5 GOL L 1 303 3 GOL GOL . I 6 NAG U 1 701 683 NAG NAG . J 4 SO4 U 1 702 2 SO4 SO4 . K 4 SO4 U 1 703 5 SO4 SO4 . L 5 GOL U 1 704 2 GOL GOL . M 7 HOH H 1 401 36 HOH HOH . M 7 HOH H 2 402 38 HOH HOH . M 7 HOH H 3 403 54 HOH HOH . M 7 HOH H 4 404 31 HOH HOH . M 7 HOH H 5 405 43 HOH HOH . M 7 HOH H 6 406 39 HOH HOH . M 7 HOH H 7 407 41 HOH HOH . M 7 HOH H 8 408 6 HOH HOH . M 7 HOH H 9 409 10 HOH HOH . M 7 HOH H 10 410 5 HOH HOH . M 7 HOH H 11 411 44 HOH HOH . M 7 HOH H 12 412 56 HOH HOH . M 7 HOH H 13 413 3 HOH HOH . M 7 HOH H 14 414 20 HOH HOH . M 7 HOH H 15 415 65 HOH HOH . M 7 HOH H 16 416 35 HOH HOH . M 7 HOH H 17 417 84 HOH HOH . M 7 HOH H 18 418 22 HOH HOH . M 7 HOH H 19 419 50 HOH HOH . N 7 HOH L 1 401 32 HOH HOH . N 7 HOH L 2 402 33 HOH HOH . N 7 HOH L 3 403 11 HOH HOH . N 7 HOH L 4 404 48 HOH HOH . N 7 HOH L 5 405 8 HOH HOH . N 7 HOH L 6 406 17 HOH HOH . N 7 HOH L 7 407 14 HOH HOH . N 7 HOH L 8 408 70 HOH HOH . N 7 HOH L 9 409 67 HOH HOH . N 7 HOH L 10 410 24 HOH HOH . N 7 HOH L 11 411 62 HOH HOH . N 7 HOH L 12 412 4 HOH HOH . N 7 HOH L 13 413 72 HOH HOH . N 7 HOH L 14 414 13 HOH HOH . N 7 HOH L 15 415 75 HOH HOH . N 7 HOH L 16 416 74 HOH HOH . O 7 HOH U 1 801 85 HOH HOH . O 7 HOH U 2 802 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 11.095 -7.434 -81.931 1 88.24 ? C1 GOL 303 L 1 HETATM 2 O O1 GOL . . . H 5 10.235 -7.001 -80.925 1 88.51 ? O1 GOL 303 L 1 HETATM 3 C C2 GOL . . . H 5 10.643 -8.858 -82.325 1 85.92 ? C2 GOL 303 L 1 HETATM 4 O O2 GOL . . . H 5 9.319 -8.888 -82.736 1 79.77 ? O2 GOL 303 L 1 HETATM 5 C C3 GOL . . . H 5 11.615 -9.288 -83.448 1 85.07 ? C3 GOL 303 L 1 HETATM 6 O O3 GOL . . . H 5 11.175 -10.529 -83.903 1 85.46 ? O3 GOL 303 L 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #