data_7O52
#
_model_server_result.job_id            3xyFoLiQWG6Vt9nEONsiMQ 
_model_server_result.datetime_utc      '2024-11-26 11:10:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7o52 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":704}' 
#
_entry.id    7O52 
#
_exptl.entry_id    7O52 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7O52 
_cell.length_a            61.478 
_cell.length_b            119.719 
_cell.length_c            241.672 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7O52 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 H CYS 22 1_555 A SG CYS 101 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 153 H CYS 140 1_555 A SG CYS 209 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 B SG CYS 25 L CYS 23 1_555 B SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf4 B SG CYS 136 L CYS 134 1_555 B SG CYS 196 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf5 C SG CYS 27 U CYS 529 1_555 C SG CYS 69 U CYS 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 C SG CYS 114 U CYS 616 1_555 C SG CYS 157 U CYS 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
covale ? covale1 C ND2 ASN 132 U ASN 634 1_555 I C1 NAG . U NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7O52 
_atom_sites.fract_transf_matrix[1][1]    0.016266 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008353 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004138 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 SO4 H 1 301 1 SO4 SO4 . 
E 4 SO4 H 1 302 3 SO4 SO4 . 
F 4 SO4 L 1 301 4 SO4 SO4 . 
G 5 GOL L 1 302 1 GOL GOL . 
H 5 GOL L 1 303 3 GOL GOL . 
I 6 NAG U 1 701 683 NAG NAG . 
J 4 SO4 U 1 702 2 SO4 SO4 . 
K 4 SO4 U 1 703 5 SO4 SO4 . 
L 5 GOL U 1 704 2 GOL GOL . 
M 7 HOH H 1 401 36 HOH HOH . 
M 7 HOH H 2 402 38 HOH HOH . 
M 7 HOH H 3 403 54 HOH HOH . 
M 7 HOH H 4 404 31 HOH HOH . 
M 7 HOH H 5 405 43 HOH HOH . 
M 7 HOH H 6 406 39 HOH HOH . 
M 7 HOH H 7 407 41 HOH HOH . 
M 7 HOH H 8 408 6 HOH HOH . 
M 7 HOH H 9 409 10 HOH HOH . 
M 7 HOH H 10 410 5 HOH HOH . 
M 7 HOH H 11 411 44 HOH HOH . 
M 7 HOH H 12 412 56 HOH HOH . 
M 7 HOH H 13 413 3 HOH HOH . 
M 7 HOH H 14 414 20 HOH HOH . 
M 7 HOH H 15 415 65 HOH HOH . 
M 7 HOH H 16 416 35 HOH HOH . 
M 7 HOH H 17 417 84 HOH HOH . 
M 7 HOH H 18 418 22 HOH HOH . 
M 7 HOH H 19 419 50 HOH HOH . 
N 7 HOH L 1 401 32 HOH HOH . 
N 7 HOH L 2 402 33 HOH HOH . 
N 7 HOH L 3 403 11 HOH HOH . 
N 7 HOH L 4 404 48 HOH HOH . 
N 7 HOH L 5 405 8 HOH HOH . 
N 7 HOH L 6 406 17 HOH HOH . 
N 7 HOH L 7 407 14 HOH HOH . 
N 7 HOH L 8 408 70 HOH HOH . 
N 7 HOH L 9 409 67 HOH HOH . 
N 7 HOH L 10 410 24 HOH HOH . 
N 7 HOH L 11 411 62 HOH HOH . 
N 7 HOH L 12 412 4 HOH HOH . 
N 7 HOH L 13 413 72 HOH HOH . 
N 7 HOH L 14 414 13 HOH HOH . 
N 7 HOH L 15 415 75 HOH HOH . 
N 7 HOH L 16 416 74 HOH HOH . 
O 7 HOH U 1 801 85 HOH HOH . 
O 7 HOH U 2 802 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 5 27.684 -50.447 -4.923 1 89.84 ? C1 GOL 704 U 1 
HETATM 2 O O1 GOL . . . L 5 27.991 -51.801 -5.036 1 89.87 ? O1 GOL 704 U 1 
HETATM 3 C C2 GOL . . . L 5 26.168 -50.353 -4.639 1 92.05 ? C2 GOL 704 U 1 
HETATM 4 O O2 GOL . . . L 5 25.811 -51.043 -3.491 1 89.28 ? O2 GOL 704 U 1 
HETATM 5 C C3 GOL . . . L 5 25.88 -48.839 -4.524 1 82.37 ? C3 GOL 704 U 1 
HETATM 6 O O3 GOL . . . L 5 24.503 -48.706 -4.361 1 88.52 ? O3 GOL 704 U 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#