data_7O6R # _model_server_result.job_id 7LjoUO7dTiNpXY-hZeve8w _model_server_result.datetime_utc '2024-11-26 11:47:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o6r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 7O6R # _exptl.entry_id 7O6R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.879 _cell.angle_gamma 90 _cell.entry_id 7O6R _cell.length_a 65.589 _cell.length_b 50.466 _cell.length_c 86.958 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O6R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 10 A ASP 10 1_555 F K K . A K 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc2 A O LEU 11 A LEU 11 1_555 F K K . A K 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc3 A O THR 145 A THR 145 1_555 F K K . A K 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc4 A OG1 THR 145 A THR 145 1_555 F K K . A K 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc5 A OE1 GLU 175 A GLU 175 1_555 F K K . A K 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc6 A O ASP 199 A ASP 199 1_555 G K K . A K 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.211 ? metalc ? metalc7 A OD1 ASP 199 A ASP 199 1_555 G K K . A K 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? metalc ? metalc8 A O GLY 201 A GLY 201 1_555 G K K . A K 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc9 A O THR 204 A THR 204 1_555 G K K . A K 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc10 A OG1 THR 204 A THR 204 1_555 G K K . A K 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc11 A OD2 ASP 206 A ASP 206 1_555 G K K . A K 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.211 ? metalc ? metalc12 F K K . A K 905 1_555 I O HOH . A HOH 1052 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.22 ? metalc ? metalc13 G K K . A K 906 1_555 I O HOH . A HOH 1176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7O6R _atom_sites.fract_transf_matrix[1][1] 0.015246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002655 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 901 901 EPE EPE . C 3 LZ1 A 1 902 1001 LZ1 LZ1 . D 4 DMS A 1 903 1101 DMS DMS . E 5 GOL A 1 904 1201 GOL GOL . F 6 K A 1 905 1 K K . G 6 K A 1 906 2 K K . H 7 TMO A 1 907 1 TMO TMO . I 8 HOH A 1 1001 17 HOH HOH . I 8 HOH A 2 1002 131 HOH HOH . I 8 HOH A 3 1003 21 HOH HOH . I 8 HOH A 4 1004 8 HOH HOH . I 8 HOH A 5 1005 100 HOH HOH . I 8 HOH A 6 1006 55 HOH HOH . I 8 HOH A 7 1007 194 HOH HOH . I 8 HOH A 8 1008 114 HOH HOH . I 8 HOH A 9 1009 123 HOH HOH . I 8 HOH A 10 1010 186 HOH HOH . I 8 HOH A 11 1011 132 HOH HOH . I 8 HOH A 12 1012 54 HOH HOH . I 8 HOH A 13 1013 15 HOH HOH . I 8 HOH A 14 1014 77 HOH HOH . I 8 HOH A 15 1015 120 HOH HOH . I 8 HOH A 16 1016 101 HOH HOH . I 8 HOH A 17 1017 31 HOH HOH . I 8 HOH A 18 1018 195 HOH HOH . I 8 HOH A 19 1019 22 HOH HOH . I 8 HOH A 20 1020 71 HOH HOH . I 8 HOH A 21 1021 14 HOH HOH . I 8 HOH A 22 1022 143 HOH HOH . I 8 HOH A 23 1023 156 HOH HOH . I 8 HOH A 24 1024 99 HOH HOH . I 8 HOH A 25 1025 175 HOH HOH . I 8 HOH A 26 1026 48 HOH HOH . I 8 HOH A 27 1027 65 HOH HOH . I 8 HOH A 28 1028 4 HOH HOH . I 8 HOH A 29 1029 116 HOH HOH . I 8 HOH A 30 1030 179 HOH HOH . I 8 HOH A 31 1031 78 HOH HOH . I 8 HOH A 32 1032 106 HOH HOH . I 8 HOH A 33 1033 86 HOH HOH . I 8 HOH A 34 1034 158 HOH HOH . I 8 HOH A 35 1035 72 HOH HOH . I 8 HOH A 36 1036 128 HOH HOH . I 8 HOH A 37 1037 117 HOH HOH . I 8 HOH A 38 1038 126 HOH HOH . I 8 HOH A 39 1039 28 HOH HOH . I 8 HOH A 40 1040 39 HOH HOH . I 8 HOH A 41 1041 108 HOH HOH . I 8 HOH A 42 1042 115 HOH HOH . I 8 HOH A 43 1043 82 HOH HOH . I 8 HOH A 44 1044 20 HOH HOH . I 8 HOH A 45 1045 49 HOH HOH . I 8 HOH A 46 1046 84 HOH HOH . I 8 HOH A 47 1047 63 HOH HOH . I 8 HOH A 48 1048 9 HOH HOH . I 8 HOH A 49 1049 58 HOH HOH . I 8 HOH A 50 1050 145 HOH HOH . I 8 HOH A 51 1051 73 HOH HOH . I 8 HOH A 52 1052 18 HOH HOH . I 8 HOH A 53 1053 35 HOH HOH . I 8 HOH A 54 1054 69 HOH HOH . I 8 HOH A 55 1055 135 HOH HOH . I 8 HOH A 56 1056 122 HOH HOH . I 8 HOH A 57 1057 53 HOH HOH . I 8 HOH A 58 1058 140 HOH HOH . I 8 HOH A 59 1059 136 HOH HOH . I 8 HOH A 60 1060 13 HOH HOH . I 8 HOH A 61 1061 11 HOH HOH . I 8 HOH A 62 1062 147 HOH HOH . I 8 HOH A 63 1063 98 HOH HOH . I 8 HOH A 64 1064 68 HOH HOH . I 8 HOH A 65 1065 29 HOH HOH . I 8 HOH A 66 1066 24 HOH HOH . I 8 HOH A 67 1067 42 HOH HOH . I 8 HOH A 68 1068 144 HOH HOH . I 8 HOH A 69 1069 107 HOH HOH . I 8 HOH A 70 1070 12 HOH HOH . I 8 HOH A 71 1071 155 HOH HOH . I 8 HOH A 72 1072 81 HOH HOH . I 8 HOH A 73 1073 19 HOH HOH . I 8 HOH A 74 1074 62 HOH HOH . I 8 HOH A 75 1075 190 HOH HOH . I 8 HOH A 76 1076 89 HOH HOH . I 8 HOH A 77 1077 109 HOH HOH . I 8 HOH A 78 1078 6 HOH HOH . I 8 HOH A 79 1079 154 HOH HOH . I 8 HOH A 80 1080 160 HOH HOH . I 8 HOH A 81 1081 38 HOH HOH . I 8 HOH A 82 1082 67 HOH HOH . I 8 HOH A 83 1083 130 HOH HOH . I 8 HOH A 84 1084 44 HOH HOH . I 8 HOH A 85 1085 30 HOH HOH . I 8 HOH A 86 1086 60 HOH HOH . I 8 HOH A 87 1087 184 HOH HOH . I 8 HOH A 88 1088 189 HOH HOH . I 8 HOH A 89 1089 50 HOH HOH . I 8 HOH A 90 1090 182 HOH HOH . I 8 HOH A 91 1091 57 HOH HOH . I 8 HOH A 92 1092 2 HOH HOH . I 8 HOH A 93 1093 134 HOH HOH . I 8 HOH A 94 1094 174 HOH HOH . I 8 HOH A 95 1095 66 HOH HOH . I 8 HOH A 96 1096 51 HOH HOH . I 8 HOH A 97 1097 40 HOH HOH . I 8 HOH A 98 1098 10 HOH HOH . I 8 HOH A 99 1099 7 HOH HOH . I 8 HOH A 100 1100 56 HOH HOH . I 8 HOH A 101 1101 90 HOH HOH . I 8 HOH A 102 1102 105 HOH HOH . I 8 HOH A 103 1103 151 HOH HOH . I 8 HOH A 104 1104 64 HOH HOH . I 8 HOH A 105 1105 124 HOH HOH . I 8 HOH A 106 1106 33 HOH HOH . I 8 HOH A 107 1107 5 HOH HOH . I 8 HOH A 108 1108 76 HOH HOH . I 8 HOH A 109 1109 1 HOH HOH . I 8 HOH A 110 1110 16 HOH HOH . I 8 HOH A 111 1111 47 HOH HOH . I 8 HOH A 112 1112 172 HOH HOH . I 8 HOH A 113 1113 192 HOH HOH . I 8 HOH A 114 1114 87 HOH HOH . I 8 HOH A 115 1115 183 HOH HOH . I 8 HOH A 116 1116 25 HOH HOH . I 8 HOH A 117 1117 94 HOH HOH . I 8 HOH A 118 1118 43 HOH HOH . I 8 HOH A 119 1119 27 HOH HOH . I 8 HOH A 120 1120 45 HOH HOH . I 8 HOH A 121 1121 165 HOH HOH . I 8 HOH A 122 1122 59 HOH HOH . I 8 HOH A 123 1123 26 HOH HOH . I 8 HOH A 124 1124 142 HOH HOH . I 8 HOH A 125 1125 127 HOH HOH . I 8 HOH A 126 1126 149 HOH HOH . I 8 HOH A 127 1127 70 HOH HOH . I 8 HOH A 128 1128 167 HOH HOH . I 8 HOH A 129 1129 34 HOH HOH . I 8 HOH A 130 1130 41 HOH HOH . I 8 HOH A 131 1131 75 HOH HOH . I 8 HOH A 132 1132 104 HOH HOH . I 8 HOH A 133 1133 133 HOH HOH . I 8 HOH A 134 1134 171 HOH HOH . I 8 HOH A 135 1135 191 HOH HOH . I 8 HOH A 136 1136 102 HOH HOH . I 8 HOH A 137 1137 103 HOH HOH . I 8 HOH A 138 1138 146 HOH HOH . I 8 HOH A 139 1139 32 HOH HOH . I 8 HOH A 140 1140 166 HOH HOH . I 8 HOH A 141 1141 97 HOH HOH . I 8 HOH A 142 1142 23 HOH HOH . I 8 HOH A 143 1143 96 HOH HOH . I 8 HOH A 144 1144 91 HOH HOH . I 8 HOH A 145 1145 173 HOH HOH . I 8 HOH A 146 1146 176 HOH HOH . I 8 HOH A 147 1147 162 HOH HOH . I 8 HOH A 148 1148 74 HOH HOH . I 8 HOH A 149 1149 37 HOH HOH . I 8 HOH A 150 1150 79 HOH HOH . I 8 HOH A 151 1151 36 HOH HOH . I 8 HOH A 152 1152 112 HOH HOH . I 8 HOH A 153 1153 150 HOH HOH . I 8 HOH A 154 1154 52 HOH HOH . I 8 HOH A 155 1155 88 HOH HOH . I 8 HOH A 156 1156 137 HOH HOH . I 8 HOH A 157 1157 129 HOH HOH . I 8 HOH A 158 1158 95 HOH HOH . I 8 HOH A 159 1159 164 HOH HOH . I 8 HOH A 160 1160 153 HOH HOH . I 8 HOH A 161 1161 92 HOH HOH . I 8 HOH A 162 1162 111 HOH HOH . I 8 HOH A 163 1163 113 HOH HOH . I 8 HOH A 164 1164 188 HOH HOH . I 8 HOH A 165 1165 178 HOH HOH . I 8 HOH A 166 1166 168 HOH HOH . I 8 HOH A 167 1167 161 HOH HOH . I 8 HOH A 168 1168 177 HOH HOH . I 8 HOH A 169 1169 152 HOH HOH . I 8 HOH A 170 1170 93 HOH HOH . I 8 HOH A 171 1171 83 HOH HOH . I 8 HOH A 172 1172 138 HOH HOH . I 8 HOH A 173 1173 139 HOH HOH . I 8 HOH A 174 1174 157 HOH HOH . I 8 HOH A 175 1175 125 HOH HOH . I 8 HOH A 176 1176 193 HOH HOH . I 8 HOH A 177 1177 110 HOH HOH . I 8 HOH A 178 1178 159 HOH HOH . I 8 HOH A 179 1179 170 HOH HOH . I 8 HOH A 180 1180 119 HOH HOH . I 8 HOH A 181 1181 148 HOH HOH . I 8 HOH A 182 1182 169 HOH HOH . I 8 HOH A 183 1183 118 HOH HOH . I 8 HOH A 184 1184 121 HOH HOH . I 8 HOH A 185 1185 185 HOH HOH . I 8 HOH A 186 1186 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 9.961 -21.864 -5.479 1 92.51 ? S DMS 903 A 1 HETATM 2 O O DMS . . . D 4 9.446 -22.891 -4.518 1 90.39 ? O DMS 903 A 1 HETATM 3 C C1 DMS . . . D 4 10.017 -20.223 -4.698 1 87.57 ? C1 DMS 903 A 1 HETATM 4 C C2 DMS . . . D 4 8.726 -21.568 -6.778 1 84.46 ? C2 DMS 903 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 46 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 1133 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #