data_7O7J # _model_server_result.job_id OY63q1WuveeB6NJbrB1yyw _model_server_result.datetime_utc '2024-11-16 08:37:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 7O7J # _exptl.entry_id 7O7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.593 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-{5-[(4-ethylpiperazin-1-yl)methyl]pyridin-2-yl}-5-fluoro-4-[4-fluoro-2-methyl-1-(propan-2-yl)-1H-benzimidazol-6-yl]py rimidin-2-amine' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7O7J _cell.length_a 81.064 _cell.length_b 81.064 _cell.length_c 178.82 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 200 A THR 358 1_555 A N PTR 201 A PTR 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C PTR 201 A PTR 359 1_555 A N LEU 202 A LEU 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C27 H32 F2 N8' _chem_comp.formula_weight 506.593 _chem_comp.id 6ZV _chem_comp.mon_nstd_flag . _chem_comp.name 'N-{5-[(4-ethylpiperazin-1-yl)methyl]pyridin-2-yl}-5-fluoro-4-[4-fluoro-2-methyl-1-(propan-2-yl)-1H-benzimidazol-6-yl]py rimidin-2-amine' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Abemaciclib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 N2 6ZV sing 1 n n C32 C31 6ZV sing 2 n n N2 C34 6ZV sing 3 n n N2 C1 6ZV sing 4 n n C31 N30 6ZV sing 5 n n C34 C35 6ZV sing 6 n n N30 C35 6ZV sing 7 n n N30 C14 6ZV sing 8 n n C1 C3 6ZV sing 9 n n C12 N 6ZV doub 10 n y C12 C11 6ZV sing 11 n y N C8 6ZV sing 12 n y C14 C11 6ZV sing 13 n n C11 C10 6ZV doub 14 n y C8 N7 6ZV sing 15 n n C8 C 6ZV doub 16 n y N7 C2 6ZV sing 17 n n C10 C 6ZV sing 18 n y N1 C2 6ZV doub 19 n y N1 C6 6ZV sing 20 n y C2 N3 6ZV sing 21 n y C6 C5 6ZV doub 22 n y N3 C4 6ZV doub 23 n y C4 C5 6ZV sing 24 n y C4 C16 6ZV sing 25 n n C5 F15 6ZV sing 26 n n C28 C26 6ZV sing 27 n n C27 C26 6ZV sing 28 n n C17 C16 6ZV doub 29 n y C17 C18 6ZV sing 30 n y C16 C21 6ZV sing 31 n y C26 N22 6ZV sing 32 n n C18 N22 6ZV sing 33 n y C18 C19 6ZV doub 34 n y C21 C20 6ZV doub 35 n y N22 C23 6ZV sing 36 n y C20 C19 6ZV sing 37 n y C20 F29 6ZV sing 38 n n C19 N24 6ZV sing 39 n y C23 N24 6ZV doub 40 n y C23 C25 6ZV sing 41 n n C1 H69 6ZV sing 42 n n C1 H77 6ZV sing 43 n n C3 H78 6ZV sing 44 n n C3 H79 6ZV sing 45 n n C3 H76 6ZV sing 46 n n C6 H42 6ZV sing 47 n n C10 H41 6ZV sing 48 n n C H68 6ZV sing 49 n n C17 H39 6ZV sing 50 n n C21 H40 6ZV sing 51 n n C12 H38 6ZV sing 52 n n C31 H44 6ZV sing 53 n n C31 H43 6ZV sing 54 n n C35 H65 6ZV sing 55 n n C35 H66 6ZV sing 56 n n C32 H71 6ZV sing 57 n n C32 H72 6ZV sing 58 n n C34 H74 6ZV sing 59 n n C34 H73 6ZV sing 60 n n C25 H51 6ZV sing 61 n n C25 H52 6ZV sing 62 n n C25 H53 6ZV sing 63 n n C27 H57 6ZV sing 64 n n C27 H58 6ZV sing 65 n n C27 H59 6ZV sing 66 n n C28 H62 6ZV sing 67 n n C28 H60 6ZV sing 68 n n C28 H61 6ZV sing 69 n n C14 H63 6ZV sing 70 n n C14 H64 6ZV sing 71 n n C26 H67 6ZV sing 72 n n N7 H70 6ZV sing 73 n n # _atom_sites.entry_id 7O7J _atom_sites.fract_transf_matrix[1][1] 0.012336 _atom_sites.fract_transf_matrix[1][2] 0.007122 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6ZV A 1 900 900 6ZV 6ZV . C 3 HOH A 1 1001 84 HOH HOH . C 3 HOH A 2 1002 94 HOH HOH . C 3 HOH A 3 1003 93 HOH HOH . C 3 HOH A 4 1004 89 HOH HOH . C 3 HOH A 5 1005 9 HOH HOH . C 3 HOH A 6 1006 6 HOH HOH . C 3 HOH A 7 1007 1 HOH HOH . C 3 HOH A 8 1008 80 HOH HOH . C 3 HOH A 9 1009 2 HOH HOH . C 3 HOH A 10 1010 83 HOH HOH . C 3 HOH A 11 1011 95 HOH HOH . C 3 HOH A 12 1012 88 HOH HOH . C 3 HOH A 13 1013 96 HOH HOH . C 3 HOH A 14 1014 22 HOH HOH . C 3 HOH A 15 1015 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6ZV . . . B 2 -58.151 2.171 -42.124 1 115.31 ? C1 6ZV 900 A 1 HETATM 2 C C2 6ZV . . . B 2 -52.473 7.533 -49.493 1 97.8 ? C2 6ZV 900 A 1 HETATM 3 C C3 6ZV . . . B 2 -59.452 2.288 -41.349 1 115.32 ? C3 6ZV 900 A 1 HETATM 4 C C4 6ZV . . . B 2 -52.799 9.935 -49.052 1 90.41 ? C4 6ZV 900 A 1 HETATM 5 C C5 6ZV . . . B 2 -51.988 10.15 -50.195 1 85.64 ? C5 6ZV 900 A 1 HETATM 6 C C6 6ZV . . . B 2 -51.462 9.078 -50.937 1 88.94 ? C6 6ZV 900 A 1 HETATM 7 N N2 6ZV . . . B 2 -58.515 2.25 -43.564 1 112.92 ? N2 6ZV 900 A 1 HETATM 8 C C10 6ZV . . . B 2 -53.893 5.553 -45.501 1 103.61 ? C10 6ZV 900 A 1 HETATM 9 C C 6ZV . . . B 2 -53.487 6.237 -46.653 1 101.92 ? C 6ZV 900 A 1 HETATM 10 C C17 6ZV . . . B 2 -53.846 10.911 -46.936 1 95.59 ? C17 6ZV 900 A 1 HETATM 11 C C21 6ZV . . . B 2 -53.473 12.564 -48.681 1 89.08 ? C21 6ZV 900 A 1 HETATM 12 C C12 6ZV . . . B 2 -53.68 3.472 -46.682 1 97.68 ? C12 6ZV 900 A 1 HETATM 13 C C16 6ZV . . . B 2 -53.378 11.17 -48.224 1 93.44 ? C16 6ZV 900 A 1 HETATM 14 C C11 6ZV . . . B 2 -53.997 4.142 -45.486 1 102.46 ? C11 6ZV 900 A 1 HETATM 15 C C19 6ZV . . . B 2 -54.474 13.29 -46.544 1 101.45 ? C19 6ZV 900 A 1 HETATM 16 C C18 6ZV . . . B 2 -54.379 11.987 -46.136 1 97.69 ? C18 6ZV 900 A 1 HETATM 17 C C20 6ZV . . . B 2 -54.006 13.55 -47.839 1 96.32 ? C20 6ZV 900 A 1 HETATM 18 C C8 6ZV . . . B 2 -53.173 5.494 -47.867 1 92.29 ? C8 6ZV 900 A 1 HETATM 19 C C23 6ZV . . . B 2 -55.304 13.275 -44.466 1 91.37 ? C23 6ZV 900 A 1 HETATM 20 C C31 6ZV . . . B 2 -56.179 1.637 -43.976 1 99.06 ? C31 6ZV 900 A 1 HETATM 21 C C35 6ZV . . . B 2 -56.691 3.941 -43.828 1 108.43 ? C35 6ZV 900 A 1 HETATM 22 C C32 6ZV . . . B 2 -57.637 1.306 -44.276 1 103.77 ? C32 6ZV 900 A 1 HETATM 23 C C34 6ZV . . . B 2 -58.19 3.628 -43.97 1 111.27 ? C34 6ZV 900 A 1 HETATM 24 C C25 6ZV . . . B 2 -55.896 13.527 -43.117 1 106.66 ? C25 6ZV 900 A 1 HETATM 25 C C27 6ZV . . . B 2 -55.932 9.75 -44.627 1 79.46 ? C27 6ZV 900 A 1 HETATM 26 C C28 6ZV . . . B 2 -53.579 10.3 -43.697 1 84.48 ? C28 6ZV 900 A 1 HETATM 27 C C14 6ZV . . . B 2 -54.432 3.298 -44.305 1 102.57 ? C14 6ZV 900 A 1 HETATM 28 C C26 6ZV . . . B 2 -54.999 10.792 -43.992 1 94.05 ? C26 6ZV 900 A 1 HETATM 29 N N 6ZV . . . B 2 -53.28 4.128 -47.818 1 95.58 ? N 6ZV 900 A 1 HETATM 30 N N1 6ZV . . . B 2 -51.695 7.785 -50.601 1 94.28 ? N1 6ZV 900 A 1 HETATM 31 N N24 6ZV . . . B 2 -55.054 14.16 -45.526 1 97.4 ? N24 6ZV 900 A 1 HETATM 32 N N3 6ZV . . . B 2 -53.024 8.609 -48.718 1 90.03 ? N3 6ZV 900 A 1 HETATM 33 N N22 6ZV . . . B 2 -54.889 11.985 -44.876 1 89.94 ? N22 6ZV 900 A 1 HETATM 34 N N30 6ZV . . . B 2 -55.864 2.965 -44.552 1 103.13 ? N30 6ZV 900 A 1 HETATM 35 N N7 6ZV . . . B 2 -52.721 6.112 -49.154 1 97.82 ? N7 6ZV 900 A 1 HETATM 36 F F29 6ZV . . . B 2 -54.115 14.895 -48.226 1 106.05 ? F29 6ZV 900 A 1 HETATM 37 F F15 6ZV . . . B 2 -51.677 11.411 -50.642 1 93.72 ? F15 6ZV 900 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 37 #