data_7O83
#
_model_server_result.job_id            zKQ3AQv4bHQ5FPiHVA7e_Q 
_model_server_result.datetime_utc      '2024-11-23 01:03:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7o83 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":203}' 
#
_entry.id    7O83 
#
_exptl.entry_id    7O83 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              462.931 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[(7S)-11-chloro-12-(5-methyl-1H-indazol-4-yl)-9-oxa-2,5,15,17-tetrazatetracyclo[8.7.1.02,7.014,18]octadeca-1(17),10,12,14(18),15-pentaen-5-yl]prop-2-en-1-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         96.39 
_cell.angle_beta          95.01 
_cell.angle_gamma         103.15 
_cell.entry_id            7O83 
_cell.length_a            33.509 
_cell.length_b            39.227 
_cell.length_c            65.721 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7O83 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 13 A CYS 12 1_555 E C V52 . A V52 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.648 ? 
covale ? covale2 B SG CYS 13 B CYS 12 1_555 I C V52 . B V52 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.577 ? 
metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc2 A OE1 GLU 64 A GLU 63 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc3 A OE2 GLU 64 A GLU 63 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? 
metalc ? metalc4 A O GLY 139 A GLY 138 1_555 F CA CA . A CA 204 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc5 C MG MG . A MG 201 1_555 D O3B GDP . A GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc6 C MG MG . A MG 201 1_555 J O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc7 C MG MG . A MG 201 1_555 J O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc8 C MG MG . A MG 201 1_555 J O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc9 C MG MG . A MG 201 1_555 J O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc10 F CA CA . A CA 204 1_555 J O HOH . A HOH 337 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc11 B OG SER 18 B SER 17 1_555 G MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc12 G MG MG . B MG 201 1_555 H O1B GDP . B GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc13 G MG MG . B MG 201 1_555 K O HOH . B HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc14 G MG MG . B MG 201 1_555 K O HOH . B HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc15 G MG MG . B MG 201 1_555 K O HOH . B HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc16 G MG MG . B MG 201 1_555 K O HOH . B HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
#
_chem_comp.formula           'C24 H23 Cl N6 O2' 
_chem_comp.formula_weight    462.931 
_chem_comp.id                V52 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[(7S)-11-chloro-12-(5-methyl-1H-indazol-4-yl)-9-oxa-2,5,15,17-tetrazatetracyclo[8.7.1.02,7.014,18]octadeca-1(17),10,12,14(18),15-pentaen-5-yl]prop-2-en-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 N2 V52 sing 375 n y 
N3 C19 V52 doub 376 n y 
N2 C21 V52 sing 377 n y 
C18 C19 V52 sing 378 n y 
C18 C17 V52 doub 379 n y 
C19 C20 V52 sing 380 n y 
C17 C16 V52 sing 381 n y 
C21 C20 V52 doub 382 n y 
C20 C15 V52 sing 383 n y 
C16 C15 V52 doub 384 n y 
C16 C22 V52 sing 385 n n 
C15 C9 V52 sing 386 n n 
C8 C9 V52 doub 387 n y 
C8 C7 V52 sing 388 n y 
N4 C7 V52 doub 389 n y 
N4 C23 V52 sing 390 n y 
C9 C10 V52 sing 391 n y 
C7 C6 V52 sing 392 n y 
C23 N5 V52 doub 393 n y 
C10 C11 V52 doub 394 n y 
C10 CL V52 sing 395 n n 
N5 C5 V52 sing 396 n y 
C6 C5 V52 doub 397 n y 
C6 C11 V52 sing 398 n y 
C5 N1 V52 sing 399 n n 
C11 O1 V52 sing 400 n n 
N1 C4 V52 sing 401 n n 
N1 C13 V52 sing 402 n n 
O1 C12 V52 sing 403 n n 
C4 C3 V52 sing 404 n n 
C12 C13 V52 sing 405 n n 
C13 C14 V52 sing 406 n n 
C3 N V52 sing 407 n n 
C14 N V52 sing 408 n n 
N C2 V52 sing 409 n n 
C2 C1 V52 sing 410 n n 
C2 O V52 doub 411 n n 
C1 C V52 sing 412 n n 
C1 H1 V52 sing 413 n n 
C1 H2 V52 sing 414 n n 
C3 H3 V52 sing 415 n n 
C3 H4 V52 sing 416 n n 
C8 H5 V52 sing 417 n n 
C12 H6 V52 sing 418 n n 
C12 H7 V52 sing 419 n n 
C13 H8 V52 sing 420 n n 
C14 H9 V52 sing 421 n n 
C14 H10 V52 sing 422 n n 
C21 H11 V52 sing 423 n n 
C22 H12 V52 sing 424 n n 
C22 H13 V52 sing 425 n n 
C22 H14 V52 sing 426 n n 
C4 H15 V52 sing 427 n n 
C4 H16 V52 sing 428 n n 
C H17 V52 sing 429 n n 
C H18 V52 sing 430 n n 
C H19 V52 sing 431 n n 
C23 H20 V52 sing 432 n n 
N2 H21 V52 sing 433 n n 
C18 H22 V52 sing 434 n n 
C17 H23 V52 sing 435 n n 
#
_atom_sites.entry_id                     7O83 
_atom_sites.fract_transf_matrix[1][1]    0.029843 
_atom_sites.fract_transf_matrix[1][2]    0.006972 
_atom_sites.fract_transf_matrix[1][3]    0.003592 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026179 
_atom_sites.fract_transf_matrix[2][3]    0.003573 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015416 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 201 201 MG MG . 
D 3 GDP A 1 202 206 GDP GDP . 
E 4 V52 A 1 203 1 V52 INH . 
F 5 CA A 1 204 1 CA CA . 
G 2 MG B 1 201 201 MG MG . 
H 3 GDP B 1 202 206 GDP GDP . 
I 4 V52 B 1 203 2 V52 INH . 
J 6 HOH A 1 301 66 HOH HOH . 
J 6 HOH A 2 302 58 HOH HOH . 
J 6 HOH A 3 303 15 HOH HOH . 
J 6 HOH A 4 304 75 HOH HOH . 
J 6 HOH A 5 305 56 HOH HOH . 
J 6 HOH A 6 306 6 HOH HOH . 
J 6 HOH A 7 307 33 HOH HOH . 
J 6 HOH A 8 308 49 HOH HOH . 
J 6 HOH A 9 309 14 HOH HOH . 
J 6 HOH A 10 310 82 HOH HOH . 
J 6 HOH A 11 311 30 HOH HOH . 
J 6 HOH A 12 312 46 HOH HOH . 
J 6 HOH A 13 313 48 HOH HOH . 
J 6 HOH A 14 314 65 HOH HOH . 
J 6 HOH A 15 315 42 HOH HOH . 
J 6 HOH A 16 316 38 HOH HOH . 
J 6 HOH A 17 317 76 HOH HOH . 
J 6 HOH A 18 318 79 HOH HOH . 
J 6 HOH A 19 319 69 HOH HOH . 
J 6 HOH A 20 320 31 HOH HOH . 
J 6 HOH A 21 321 78 HOH HOH . 
J 6 HOH A 22 322 24 HOH HOH . 
J 6 HOH A 23 323 83 HOH HOH . 
J 6 HOH A 24 324 36 HOH HOH . 
J 6 HOH A 25 325 17 HOH HOH . 
J 6 HOH A 26 326 34 HOH HOH . 
J 6 HOH A 27 327 61 HOH HOH . 
J 6 HOH A 28 328 80 HOH HOH . 
J 6 HOH A 29 329 8 HOH HOH . 
J 6 HOH A 30 330 10 HOH HOH . 
J 6 HOH A 31 331 52 HOH HOH . 
J 6 HOH A 32 332 27 HOH HOH . 
J 6 HOH A 33 333 94 HOH HOH . 
J 6 HOH A 34 334 53 HOH HOH . 
J 6 HOH A 35 335 51 HOH HOH . 
J 6 HOH A 36 336 77 HOH HOH . 
J 6 HOH A 37 337 81 HOH HOH . 
K 6 HOH B 1 301 21 HOH HOH . 
K 6 HOH B 2 302 67 HOH HOH . 
K 6 HOH B 3 303 16 HOH HOH . 
K 6 HOH B 4 304 23 HOH HOH . 
K 6 HOH B 5 305 13 HOH HOH . 
K 6 HOH B 6 306 59 HOH HOH . 
K 6 HOH B 7 307 70 HOH HOH . 
K 6 HOH B 8 308 44 HOH HOH . 
K 6 HOH B 9 309 68 HOH HOH . 
K 6 HOH B 10 310 9 HOH HOH . 
K 6 HOH B 11 311 32 HOH HOH . 
K 6 HOH B 12 312 89 HOH HOH . 
K 6 HOH B 13 313 54 HOH HOH . 
K 6 HOH B 14 314 73 HOH HOH . 
K 6 HOH B 15 315 74 HOH HOH . 
K 6 HOH B 16 316 40 HOH HOH . 
K 6 HOH B 17 317 86 HOH HOH . 
K 6 HOH B 18 318 45 HOH HOH . 
K 6 HOH B 19 319 7 HOH HOH . 
K 6 HOH B 20 320 28 HOH HOH . 
K 6 HOH B 21 321 19 HOH HOH . 
K 6 HOH B 22 322 88 HOH HOH . 
K 6 HOH B 23 323 26 HOH HOH . 
K 6 HOH B 24 324 12 HOH HOH . 
K 6 HOH B 25 325 87 HOH HOH . 
K 6 HOH B 26 326 37 HOH HOH . 
K 6 HOH B 27 327 39 HOH HOH . 
K 6 HOH B 28 328 84 HOH HOH . 
K 6 HOH B 29 329 72 HOH HOH . 
K 6 HOH B 30 330 47 HOH HOH . 
K 6 HOH B 31 331 43 HOH HOH . 
K 6 HOH B 32 332 55 HOH HOH . 
K 6 HOH B 33 333 92 HOH HOH . 
K 6 HOH B 34 334 63 HOH HOH . 
K 6 HOH B 35 335 93 HOH HOH . 
K 6 HOH B 36 336 29 HOH HOH . 
K 6 HOH B 37 337 50 HOH HOH . 
K 6 HOH B 38 338 35 HOH HOH . 
K 6 HOH B 39 339 90 HOH HOH . 
K 6 HOH B 40 340 18 HOH HOH . 
K 6 HOH B 41 341 85 HOH HOH . 
K 6 HOH B 42 342 11 HOH HOH . 
K 6 HOH B 43 343 57 HOH HOH . 
K 6 HOH B 44 344 25 HOH HOH . 
K 6 HOH B 45 345 64 HOH HOH . 
K 6 HOH B 46 346 22 HOH HOH . 
K 6 HOH B 47 347 62 HOH HOH . 
K 6 HOH B 48 348 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 V52 . . . E 4 -5.516 -6.59 -5.691 1 10.95 ? C1 V52 203 A 1 
HETATM 2 C C2 V52 . . . E 4 -6.946 -7.009 -6.009 1 10.09 ? C2 V52 203 A 1 
HETATM 3 C C3 V52 . . . E 4 -6.45 -6.764 -8.464 1 9.04 ? C3 V52 203 A 1 
HETATM 4 C C7 V52 . . . E 4 -9.135 -9.132 -13.213 1 8.29 ? C7 V52 203 A 1 
HETATM 5 C C8 V52 . . . E 4 -9.799 -10.15 -13.92 1 8.22 ? C8 V52 203 A 1 
HETATM 6 C C9 V52 . . . E 4 -10.279 -11.291 -13.335 1 8.41 ? C9 V52 203 A 1 
HETATM 7 C C10 V52 . . . E 4 -10.195 -11.407 -11.942 1 8.8 ? C10 V52 203 A 1 
HETATM 8 C C11 V52 . . . E 4 -9.567 -10.45 -11.187 1 8.58 ? C11 V52 203 A 1 
HETATM 9 C C12 V52 . . . E 4 -9.764 -9.533 -8.977 1 8.74 ? C12 V52 203 A 1 
HETATM 10 C C13 V52 . . . E 4 -8.492 -8.79 -8.71 1 8.69 ? C13 V52 203 A 1 
HETATM 11 C C14 V52 . . . E 4 -8.632 -7.576 -7.815 1 8.92 ? C14 V52 203 A 1 
HETATM 12 C C15 V52 . . . E 4 -10.687 -12.425 -14.208 1 7.85 ? C15 V52 203 A 1 
HETATM 13 C C16 V52 . . . E 4 -12.049 -12.726 -14.4 1 8.07 ? C16 V52 203 A 1 
HETATM 14 C C19 V52 . . . E 4 -10.135 -14.283 -15.669 1 7.37 ? C19 V52 203 A 1 
HETATM 15 C C20 V52 . . . E 4 -9.716 -13.214 -14.858 1 7.6 ? C20 V52 203 A 1 
HETATM 16 C C21 V52 . . . E 4 -8.309 -13.193 -15 1 7.79 ? C21 V52 203 A 1 
HETATM 17 C C22 V52 . . . E 4 -13.124 -11.934 -13.705 1 8.02 ? C22 V52 203 A 1 
HETATM 18 CL CL V52 . . . E 4 -10.774 -12.835 -11.141 1 10.55 ? CL V52 203 A 1 
HETATM 19 C C6 V52 . . . E 4 -8.956 -9.303 -11.806 1 8.45 ? C6 V52 203 A 1 
HETATM 20 O O1 V52 . . . E 4 -9.628 -10.678 -9.836 1 8.7 ? O1 V52 203 A 1 
HETATM 21 N N1 V52 . . . E 4 -7.734 -8.302 -9.869 1 8.61 ? N1 V52 203 A 1 
HETATM 22 C C4 V52 . . . E 4 -6.384 -7.861 -9.498 1 8.82 ? C4 V52 203 A 1 
HETATM 23 N N V52 . . . E 4 -7.317 -7.156 -7.319 1 9.4 ? N V52 203 A 1 
HETATM 24 O O V52 . . . E 4 -7.744 -7.138 -5.069 1 9.73 ? O V52 203 A 1 
HETATM 25 C C V52 . . . E 4 -5.383 -5.312 -4.809 1 12.36 ? C V52 203 A 1 
HETATM 26 N N4 V52 . . . E 4 -8.784 -7.994 -13.899 1 8.47 ? N4 V52 203 A 1 
HETATM 27 C C23 V52 . . . E 4 -8.259 -7.043 -13.169 1 8.45 ? C23 V52 203 A 1 
HETATM 28 N N5 V52 . . . E 4 -7.949 -7.063 -11.866 1 8.73 ? N5 V52 203 A 1 
HETATM 29 C C5 V52 . . . E 4 -8.259 -8.193 -11.206 1 8.58 ? C5 V52 203 A 1 
HETATM 30 N N2 V52 . . . E 4 -7.895 -14.128 -15.834 1 7.9 ? N2 V52 203 A 1 
HETATM 31 N N3 V52 . . . E 4 -9.013 -14.793 -16.236 1 7.66 ? N3 V52 203 A 1 
HETATM 32 C C18 V52 . . . E 4 -11.469 -14.614 -15.829 1 7.38 ? C18 V52 203 A 1 
HETATM 33 C C17 V52 . . . E 4 -12.409 -13.824 -15.199 1 7.73 ? C17 V52 203 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           33 
#