data_7O8F
#
_model_server_result.job_id            XrOKUMkDmzFZ6ic1-92zbQ 
_model_server_result.datetime_utc      '2024-11-23 05:17:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7o8f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    7O8F 
#
_exptl.entry_id    7O8F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          131.78 
_cell.angle_gamma         90 
_cell.entry_id            7O8F 
_cell.length_a            104.48 
_cell.length_b            51.18 
_cell.length_c            78.33 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7O8F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             251 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              235 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.318 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 394 n n 
C1 C6 RET sing 395 n n 
C1 C16 RET sing 396 n n 
C1 C17 RET sing 397 n n 
C2 C3 RET sing 398 n n 
C2 H21 RET sing 399 n n 
C2 H22 RET sing 400 n n 
C3 C4 RET sing 401 n n 
C3 H31 RET sing 402 n n 
C3 H32 RET sing 403 n n 
C4 C5 RET sing 404 n n 
C4 H41 RET sing 405 n n 
C4 H42 RET sing 406 n n 
C5 C6 RET doub 407 n n 
C5 C18 RET sing 408 n n 
C6 C7 RET sing 409 n n 
C7 C8 RET doub 410 e n 
C7 H7 RET sing 411 n n 
C8 C9 RET sing 412 n n 
C8 H8 RET sing 413 n n 
C9 C10 RET doub 414 e n 
C9 C19 RET sing 415 n n 
C10 C11 RET sing 416 n n 
C10 H10 RET sing 417 n n 
C11 C12 RET doub 418 e n 
C11 H11 RET sing 419 n n 
C12 C13 RET sing 420 n n 
C12 H12 RET sing 421 n n 
C13 C14 RET doub 422 e n 
C13 C20 RET sing 423 n n 
C14 C15 RET sing 424 n n 
C14 H14 RET sing 425 n n 
C15 O1 RET doub 426 n n 
C15 H15 RET sing 427 n n 
C16 H161 RET sing 428 n n 
C16 H162 RET sing 429 n n 
C16 H163 RET sing 430 n n 
C17 H171 RET sing 431 n n 
C17 H172 RET sing 432 n n 
C17 H173 RET sing 433 n n 
C18 H181 RET sing 434 n n 
C18 H182 RET sing 435 n n 
C18 H183 RET sing 436 n n 
C19 H191 RET sing 437 n n 
C19 H192 RET sing 438 n n 
C19 H193 RET sing 439 n n 
C20 H201 RET sing 440 n n 
C20 H202 RET sing 441 n n 
C20 H203 RET sing 442 n n 
#
_atom_sites.entry_id                     7O8F 
_atom_sites.fract_transf_matrix[1][1]    0.009571 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008552 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019539 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01712 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 301 RET RET . 
C 3 CL A 1 302 351 CL CL . 
D 4 OLC A 1 303 501 OLC OLC . 
E 4 OLC A 1 304 502 OLC OLC . 
F 5 OLA A 1 305 503 OLA OLA . 
G 5 OLA A 1 306 504 OLA OLA . 
H 5 OLA A 1 307 505 OLA OLA . 
I 4 OLC A 1 308 506 OLC OLC . 
J 5 OLA A 1 309 507 OLA OLA . 
K 5 OLA A 1 310 508 OLA OLA . 
L 5 OLA A 1 311 509 OLA OLA . 
M 6 HOH A 1 401 438 HOH HOH . 
M 6 HOH A 2 402 446 HOH HOH . 
M 6 HOH A 3 403 405 HOH HOH . 
M 6 HOH A 4 404 429 HOH HOH . 
M 6 HOH A 5 405 468 HOH HOH . 
M 6 HOH A 6 406 458 HOH HOH . 
M 6 HOH A 7 407 411 HOH HOH . 
M 6 HOH A 8 408 486 HOH HOH . 
M 6 HOH A 9 409 426 HOH HOH . 
M 6 HOH A 10 410 485 HOH HOH . 
M 6 HOH A 11 411 462 HOH HOH . 
M 6 HOH A 12 412 470 HOH HOH . 
M 6 HOH A 13 413 442 HOH HOH . 
M 6 HOH A 14 414 402 HOH HOH . 
M 6 HOH A 15 415 408 HOH HOH . 
M 6 HOH A 16 416 406 HOH HOH . 
M 6 HOH A 17 417 443 HOH HOH . 
M 6 HOH A 18 418 467 HOH HOH . 
M 6 HOH A 19 419 425 HOH HOH . 
M 6 HOH A 20 420 428 HOH HOH . 
M 6 HOH A 21 421 407 HOH HOH . 
M 6 HOH A 22 422 441 HOH HOH . 
M 6 HOH A 23 423 440 HOH HOH . 
M 6 HOH A 24 424 434 HOH HOH . 
M 6 HOH A 25 425 414 HOH HOH . 
M 6 HOH A 26 426 417 HOH HOH . 
M 6 HOH A 27 427 409 HOH HOH . 
M 6 HOH A 28 428 422 HOH HOH . 
M 6 HOH A 29 429 447 HOH HOH . 
M 6 HOH A 30 430 430 HOH HOH . 
M 6 HOH A 31 431 401 HOH HOH . 
M 6 HOH A 32 432 418 HOH HOH . 
M 6 HOH A 33 433 403 HOH HOH . 
M 6 HOH A 34 434 437 HOH HOH . 
M 6 HOH A 35 435 404 HOH HOH . 
M 6 HOH A 36 436 432 HOH HOH . 
M 6 HOH A 37 437 454 HOH HOH . 
M 6 HOH A 38 438 452 HOH HOH . 
M 6 HOH A 39 439 419 HOH HOH . 
M 6 HOH A 40 440 464 HOH HOH . 
M 6 HOH A 41 441 416 HOH HOH . 
M 6 HOH A 42 442 433 HOH HOH . 
M 6 HOH A 43 443 435 HOH HOH . 
M 6 HOH A 44 444 439 HOH HOH . 
M 6 HOH A 45 445 456 HOH HOH . 
M 6 HOH A 46 446 424 HOH HOH . 
M 6 HOH A 47 447 423 HOH HOH . 
M 6 HOH A 48 448 413 HOH HOH . 
M 6 HOH A 49 449 427 HOH HOH . 
M 6 HOH A 50 450 410 HOH HOH . 
M 6 HOH A 51 451 436 HOH HOH . 
M 6 HOH A 52 452 415 HOH HOH . 
M 6 HOH A 53 453 471 HOH HOH . 
M 6 HOH A 54 454 449 HOH HOH . 
M 6 HOH A 55 455 448 HOH HOH . 
M 6 HOH A 56 456 445 HOH HOH . 
M 6 HOH A 57 457 453 HOH HOH . 
M 6 HOH A 58 458 421 HOH HOH . 
M 6 HOH A 59 459 459 HOH HOH . 
M 6 HOH A 60 460 479 HOH HOH . 
M 6 HOH A 61 461 420 HOH HOH . 
M 6 HOH A 62 462 412 HOH HOH . 
M 6 HOH A 63 463 465 HOH HOH . 
M 6 HOH A 64 464 444 HOH HOH . 
M 6 HOH A 65 465 451 HOH HOH . 
M 6 HOH A 66 466 455 HOH HOH . 
M 6 HOH A 67 467 431 HOH HOH . 
M 6 HOH A 68 468 473 HOH HOH . 
M 6 HOH A 69 469 450 HOH HOH . 
M 6 HOH A 70 470 472 HOH HOH . 
M 6 HOH A 71 471 457 HOH HOH . 
M 6 HOH A 72 472 463 HOH HOH . 
M 6 HOH A 73 473 460 HOH HOH . 
M 6 HOH A 74 474 461 HOH HOH . 
M 6 HOH A 75 475 474 HOH HOH . 
M 6 HOH A 76 476 466 HOH HOH . 
M 6 HOH A 77 477 475 HOH HOH . 
M 6 HOH A 78 478 476 HOH HOH . 
M 6 HOH A 79 479 469 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . B 2 -21.083 -18.62 -5.107 1 19.82 ? C1 RET 301 A 1 
HETATM 2 C C2 RET . . . B 2 -21.795 -19.575 -6.067 1 21.05 ? C2 RET 301 A 1 
HETATM 3 C C3 RET . . . B 2 -23.291 -19.502 -5.867 1 20.09 ? C3 RET 301 A 1 
HETATM 4 C C4 RET . . . B 2 -23.646 -20.059 -4.497 1 21.02 ? C4 RET 301 A 1 
HETATM 5 C C5 RET . . . B 2 -22.827 -19.296 -3.488 1 20.17 ? C5 RET 301 A 1 
HETATM 6 C C6 RET . . . B 2 -21.69 -18.614 -3.717 1 18.1 ? C6 RET 301 A 1 
HETATM 7 C C7 RET . . . B 2 -21.058 -17.803 -2.656 1 19.1 ? C7 RET 301 A 1 
HETATM 8 C C8 RET . . . B 2 -19.927 -17.097 -2.764 1 19.6 ? C8 RET 301 A 1 
HETATM 9 C C9 RET . . . B 2 -19.424 -16.248 -1.667 1 18.46 ? C9 RET 301 A 1 
HETATM 10 C C10 RET . . . B 2 -18.32 -15.513 -1.91 1 20.12 ? C10 RET 301 A 1 
HETATM 11 C C11 RET . . . B 2 -17.684 -14.597 -0.965 1 24.43 ? C11 RET 301 A 1 
HETATM 12 C C12 RET . . . B 2 -16.654 -13.859 -1.392 1 21.47 ? C12 RET 301 A 1 
HETATM 13 C C13 RET . . . B 2 -16.042 -12.794 -0.572 1 21.75 ? C13 RET 301 A 1 
HETATM 14 C C14 RET . . . B 2 -15.105 -12.019 -1.149 1 21.34 ? C14 RET 301 A 1 
HETATM 15 C C15 RET . . . B 2 -14.405 -10.895 -0.55 1 24.23 ? C15 RET 301 A 1 
HETATM 16 C C16 RET . . . B 2 -19.655 -19.145 -5.091 1 20.81 ? C16 RET 301 A 1 
HETATM 17 C C17 RET . . . B 2 -21.108 -17.232 -5.761 1 20.18 ? C17 RET 301 A 1 
HETATM 18 C C18 RET . . . B 2 -23.426 -19.41 -2.112 1 19.32 ? C18 RET 301 A 1 
HETATM 19 C C19 RET . . . B 2 -20.163 -16.241 -0.37 1 19.72 ? C19 RET 301 A 1 
HETATM 20 C C20 RET . . . B 2 -16.5 -12.601 0.84 1 22.46 ? C20 RET 301 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#