data_7O8F
#
_model_server_result.job_id            o8rJXgMX37w0sPCYGfhPMA 
_model_server_result.datetime_utc      '2024-11-26 21:46:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7o8f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    7O8F 
#
_exptl.entry_id    7O8F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          131.78 
_cell.angle_gamma         90 
_cell.entry_id            7O8F 
_cell.length_a            104.48 
_cell.length_b            51.18 
_cell.length_c            78.33 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7O8F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 I N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             251 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              235 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.318 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 290 n n 
C10 C9 OLC doub 291 n n 
C10 C11 OLC sing 292 n n 
C9 C8 OLC sing 293 n n 
C17 C16 OLC sing 294 z n 
C11 C12 OLC sing 295 n n 
C8 C7 OLC sing 296 n n 
C24 C22 OLC sing 297 n n 
C24 O25 OLC sing 298 n n 
C16 C15 OLC sing 299 n n 
C12 C13 OLC sing 300 n n 
C7 C6 OLC sing 301 n n 
C15 C14 OLC sing 302 n n 
C13 C14 OLC sing 303 n n 
C6 C5 OLC sing 304 n n 
C5 C4 OLC sing 305 n n 
C4 C3 OLC sing 306 n n 
C3 C2 OLC sing 307 n n 
C2 C1 OLC sing 308 n n 
C21 C22 OLC sing 309 n n 
C21 O20 OLC sing 310 n n 
C1 O19 OLC doub 311 n n 
C1 O20 OLC sing 312 n n 
C22 O23 OLC sing 313 n n 
C18 H18 OLC sing 314 n n 
C18 H18A OLC sing 315 n n 
C18 H18B OLC sing 316 n n 
C10 H10 OLC sing 317 n n 
C9 H9 OLC sing 318 n n 
C17 H17 OLC sing 319 n n 
C17 H17A OLC sing 320 n n 
C11 H11 OLC sing 321 n n 
C11 H11A OLC sing 322 n n 
C8 H8 OLC sing 323 n n 
C8 H8A OLC sing 324 n n 
C24 H24 OLC sing 325 n n 
C24 H24A OLC sing 326 n n 
C16 H16 OLC sing 327 n n 
C16 H16A OLC sing 328 n n 
C12 H12 OLC sing 329 n n 
C12 H12A OLC sing 330 n n 
C7 H7 OLC sing 331 n n 
C7 H7A OLC sing 332 n n 
C15 H15 OLC sing 333 n n 
C15 H15A OLC sing 334 n n 
C13 H13 OLC sing 335 n n 
C13 H13A OLC sing 336 n n 
C6 H6 OLC sing 337 n n 
C6 H6A OLC sing 338 n n 
C14 H14 OLC sing 339 n n 
C14 H14A OLC sing 340 n n 
C5 H5 OLC sing 341 n n 
C5 H5A OLC sing 342 n n 
C4 H4 OLC sing 343 n n 
C4 H4A OLC sing 344 n n 
C3 H3 OLC sing 345 n n 
C3 H3A OLC sing 346 n n 
C2 H2 OLC sing 347 n n 
C2 H2A OLC sing 348 n n 
C21 H21 OLC sing 349 n n 
C21 H21A OLC sing 350 n n 
C22 H22 OLC sing 351 n n 
O25 HO25 OLC sing 352 n n 
O23 HO23 OLC sing 353 n n 
#
_atom_sites.entry_id                     7O8F 
_atom_sites.fract_transf_matrix[1][1]    0.009571 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008552 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019539 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01712 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 301 RET RET . 
C 3 CL A 1 302 351 CL CL . 
D 4 OLC A 1 303 501 OLC OLC . 
E 4 OLC A 1 304 502 OLC OLC . 
F 5 OLA A 1 305 503 OLA OLA . 
G 5 OLA A 1 306 504 OLA OLA . 
H 5 OLA A 1 307 505 OLA OLA . 
I 4 OLC A 1 308 506 OLC OLC . 
J 5 OLA A 1 309 507 OLA OLA . 
K 5 OLA A 1 310 508 OLA OLA . 
L 5 OLA A 1 311 509 OLA OLA . 
M 6 HOH A 1 401 438 HOH HOH . 
M 6 HOH A 2 402 446 HOH HOH . 
M 6 HOH A 3 403 405 HOH HOH . 
M 6 HOH A 4 404 429 HOH HOH . 
M 6 HOH A 5 405 468 HOH HOH . 
M 6 HOH A 6 406 458 HOH HOH . 
M 6 HOH A 7 407 411 HOH HOH . 
M 6 HOH A 8 408 486 HOH HOH . 
M 6 HOH A 9 409 426 HOH HOH . 
M 6 HOH A 10 410 485 HOH HOH . 
M 6 HOH A 11 411 462 HOH HOH . 
M 6 HOH A 12 412 470 HOH HOH . 
M 6 HOH A 13 413 442 HOH HOH . 
M 6 HOH A 14 414 402 HOH HOH . 
M 6 HOH A 15 415 408 HOH HOH . 
M 6 HOH A 16 416 406 HOH HOH . 
M 6 HOH A 17 417 443 HOH HOH . 
M 6 HOH A 18 418 467 HOH HOH . 
M 6 HOH A 19 419 425 HOH HOH . 
M 6 HOH A 20 420 428 HOH HOH . 
M 6 HOH A 21 421 407 HOH HOH . 
M 6 HOH A 22 422 441 HOH HOH . 
M 6 HOH A 23 423 440 HOH HOH . 
M 6 HOH A 24 424 434 HOH HOH . 
M 6 HOH A 25 425 414 HOH HOH . 
M 6 HOH A 26 426 417 HOH HOH . 
M 6 HOH A 27 427 409 HOH HOH . 
M 6 HOH A 28 428 422 HOH HOH . 
M 6 HOH A 29 429 447 HOH HOH . 
M 6 HOH A 30 430 430 HOH HOH . 
M 6 HOH A 31 431 401 HOH HOH . 
M 6 HOH A 32 432 418 HOH HOH . 
M 6 HOH A 33 433 403 HOH HOH . 
M 6 HOH A 34 434 437 HOH HOH . 
M 6 HOH A 35 435 404 HOH HOH . 
M 6 HOH A 36 436 432 HOH HOH . 
M 6 HOH A 37 437 454 HOH HOH . 
M 6 HOH A 38 438 452 HOH HOH . 
M 6 HOH A 39 439 419 HOH HOH . 
M 6 HOH A 40 440 464 HOH HOH . 
M 6 HOH A 41 441 416 HOH HOH . 
M 6 HOH A 42 442 433 HOH HOH . 
M 6 HOH A 43 443 435 HOH HOH . 
M 6 HOH A 44 444 439 HOH HOH . 
M 6 HOH A 45 445 456 HOH HOH . 
M 6 HOH A 46 446 424 HOH HOH . 
M 6 HOH A 47 447 423 HOH HOH . 
M 6 HOH A 48 448 413 HOH HOH . 
M 6 HOH A 49 449 427 HOH HOH . 
M 6 HOH A 50 450 410 HOH HOH . 
M 6 HOH A 51 451 436 HOH HOH . 
M 6 HOH A 52 452 415 HOH HOH . 
M 6 HOH A 53 453 471 HOH HOH . 
M 6 HOH A 54 454 449 HOH HOH . 
M 6 HOH A 55 455 448 HOH HOH . 
M 6 HOH A 56 456 445 HOH HOH . 
M 6 HOH A 57 457 453 HOH HOH . 
M 6 HOH A 58 458 421 HOH HOH . 
M 6 HOH A 59 459 459 HOH HOH . 
M 6 HOH A 60 460 479 HOH HOH . 
M 6 HOH A 61 461 420 HOH HOH . 
M 6 HOH A 62 462 412 HOH HOH . 
M 6 HOH A 63 463 465 HOH HOH . 
M 6 HOH A 64 464 444 HOH HOH . 
M 6 HOH A 65 465 451 HOH HOH . 
M 6 HOH A 66 466 455 HOH HOH . 
M 6 HOH A 67 467 431 HOH HOH . 
M 6 HOH A 68 468 473 HOH HOH . 
M 6 HOH A 69 469 450 HOH HOH . 
M 6 HOH A 70 470 472 HOH HOH . 
M 6 HOH A 71 471 457 HOH HOH . 
M 6 HOH A 72 472 463 HOH HOH . 
M 6 HOH A 73 473 460 HOH HOH . 
M 6 HOH A 74 474 461 HOH HOH . 
M 6 HOH A 75 475 474 HOH HOH . 
M 6 HOH A 76 476 466 HOH HOH . 
M 6 HOH A 77 477 475 HOH HOH . 
M 6 HOH A 78 478 476 HOH HOH . 
M 6 HOH A 79 479 469 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . D 4 -29.602 -25.419 -1.957 1 55.99 ? C18 OLC 303 A 1 
HETATM 2 C C10 OLC . . . D 4 -31.587 -22.465 6.63 1 59.25 ? C10 OLC 303 A 1 
HETATM 3 C C9 OLC . . . D 4 -30.626 -21.852 7.305 1 71.75 ? C9 OLC 303 A 1 
HETATM 4 C C17 OLC . . . D 4 -31.016 -25.191 -1.429 1 52.14 ? C17 OLC 303 A 1 
HETATM 5 C C11 OLC . . . D 4 -31.72 -22.396 5.11 1 51.26 ? C11 OLC 303 A 1 
HETATM 6 C C8 OLC . . . D 4 -29.538 -21.003 6.64 1 67.1 ? C8 OLC 303 A 1 
HETATM 7 C C24 OLC . . . D 4 -27.609 -20.725 18.744 1 65.69 ? C24 OLC 303 A 1 
HETATM 8 C C16 OLC . . . D 4 -31.056 -25.56 0.052 1 54.58 ? C16 OLC 303 A 1 
HETATM 9 C C12 OLC . . . D 4 -32.148 -23.764 4.581 1 52.65 ? C12 OLC 303 A 1 
HETATM 10 C C7 OLC . . . D 4 -28.275 -21.03 7.503 1 60.23 ? C7 OLC 303 A 1 
HETATM 11 C C15 OLC . . . D 4 -31.906 -24.553 0.824 1 50.31 ? C15 OLC 303 A 1 
HETATM 12 C C13 OLC . . . D 4 -32.454 -23.657 3.088 1 68.24 ? C13 OLC 303 A 1 
HETATM 13 C C6 OLC . . . D 4 -28.138 -19.738 8.303 1 61.49 ? C6 OLC 303 A 1 
HETATM 14 C C14 OLC . . . D 4 -31.68 -24.731 2.323 1 59.09 ? C14 OLC 303 A 1 
HETATM 15 C C5 OLC . . . D 4 -27.303 -19.995 9.556 1 51.57 ? C5 OLC 303 A 1 
HETATM 16 C C4 OLC . . . D 4 -27.715 -18.983 10.618 1 59.71 ? C4 OLC 303 A 1 
HETATM 17 C C3 OLC . . . D 4 -26.99 -19.29 11.92 1 51.14 ? C3 OLC 303 A 1 
HETATM 18 C C2 OLC . . . D 4 -27.724 -20.402 12.662 1 65.33 ? C2 OLC 303 A 1 
HETATM 19 C C21 OLC . . . D 4 -27.876 -20.517 16.276 1 65.95 ? C21 OLC 303 A 1 
HETATM 20 C C1 OLC . . . D 4 -27.118 -20.522 14.055 1 56.95 ? C1 OLC 303 A 1 
HETATM 21 C C22 OLC . . . D 4 -27.393 -21.424 17.404 1 56.81 ? C22 OLC 303 A 1 
HETATM 22 O O19 OLC . . . D 4 -26.065 -20.025 14.28 1 74.12 ? O19 OLC 303 A 1 
HETATM 23 O O25 OLC . . . D 4 -26.743 -21.27 19.703 1 80 ? O25 OLC 303 A 1 
HETATM 24 O O23 OLC . . . D 4 -28.114 -22.622 17.373 1 61.4 ? O23 OLC 303 A 1 
HETATM 25 O O20 OLC . . . D 4 -27.79 -21.216 15.066 1 71.57 ? O20 OLC 303 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           25 
#