data_7O8I # _model_server_result.job_id V65WqRksETh__BVMZIjecA _model_server_result.datetime_utc '2024-11-23 09:05:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7O8I # _exptl.entry_id 7O8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 131.78 _cell.angle_gamma 90 _cell.entry_id 7O8I _cell.length_a 104.48 _cell.length_b 51.18 _cell.length_c 78.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 251 A LYS 235 1_555 B C15 RET . A RET 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A NZ LYS 251 A LYS 235 1_555 B C15 RET . A RET 301 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 394 n n C1 C6 RET sing 395 n n C1 C16 RET sing 396 n n C1 C17 RET sing 397 n n C2 C3 RET sing 398 n n C2 H21 RET sing 399 n n C2 H22 RET sing 400 n n C3 C4 RET sing 401 n n C3 H31 RET sing 402 n n C3 H32 RET sing 403 n n C4 C5 RET sing 404 n n C4 H41 RET sing 405 n n C4 H42 RET sing 406 n n C5 C6 RET doub 407 n n C5 C18 RET sing 408 n n C6 C7 RET sing 409 n n C7 C8 RET doub 410 e n C7 H7 RET sing 411 n n C8 C9 RET sing 412 n n C8 H8 RET sing 413 n n C9 C10 RET doub 414 e n C9 C19 RET sing 415 n n C10 C11 RET sing 416 n n C10 H10 RET sing 417 n n C11 C12 RET doub 418 e n C11 H11 RET sing 419 n n C12 C13 RET sing 420 n n C12 H12 RET sing 421 n n C13 C14 RET doub 422 e n C13 C20 RET sing 423 n n C14 C15 RET sing 424 n n C14 H14 RET sing 425 n n C15 O1 RET doub 426 n n C15 H15 RET sing 427 n n C16 H161 RET sing 428 n n C16 H162 RET sing 429 n n C16 H163 RET sing 430 n n C17 H171 RET sing 431 n n C17 H172 RET sing 432 n n C17 H173 RET sing 433 n n C18 H181 RET sing 434 n n C18 H182 RET sing 435 n n C18 H183 RET sing 436 n n C19 H191 RET sing 437 n n C19 H192 RET sing 438 n n C19 H193 RET sing 439 n n C20 H201 RET sing 440 n n C20 H202 RET sing 441 n n C20 H203 RET sing 442 n n # _atom_sites.entry_id 7O8I _atom_sites.fract_transf_matrix[1][1] 0.009571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008552 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 CL A 1 302 351 CL CL . D 3 CL A 1 303 352 CL CL . E 4 OLC A 1 304 501 OLC OLC . F 4 OLC A 1 305 502 OLC OLC . G 5 OLA A 1 306 503 OLA OLA . H 5 OLA A 1 307 505 OLA OLA . I 4 OLC A 1 308 506 OLC OLC . J 5 OLA A 1 309 508 OLA OLA . K 5 OLA A 1 310 509 OLA OLA . L 6 HOH A 1 401 429 HOH HOH . L 6 HOH A 2 402 426 HOH HOH . L 6 HOH A 3 403 440 HOH HOH . L 6 HOH A 4 404 430 HOH HOH . L 6 HOH A 5 405 411 HOH HOH . L 6 HOH A 6 406 446 HOH HOH . L 6 HOH A 7 407 408 HOH HOH . L 6 HOH A 8 408 467 HOH HOH . L 6 HOH A 9 409 455 HOH HOH . L 6 HOH A 10 410 481 HOH HOH . L 6 HOH A 11 411 444 HOH HOH . L 6 HOH A 12 412 406 HOH HOH . L 6 HOH A 13 413 428 HOH HOH . L 6 HOH A 14 414 436 HOH HOH . L 6 HOH A 15 415 427 HOH HOH . L 6 HOH A 16 416 435 HOH HOH . L 6 HOH A 17 417 405 HOH HOH . L 6 HOH A 18 418 407 HOH HOH . L 6 HOH A 19 419 403 HOH HOH . L 6 HOH A 20 420 449 HOH HOH . L 6 HOH A 21 421 402 HOH HOH . L 6 HOH A 22 422 414 HOH HOH . L 6 HOH A 23 423 401 HOH HOH . L 6 HOH A 24 424 418 HOH HOH . L 6 HOH A 25 425 438 HOH HOH . L 6 HOH A 26 426 404 HOH HOH . L 6 HOH A 27 427 442 HOH HOH . L 6 HOH A 28 428 451 HOH HOH . L 6 HOH A 29 429 479 HOH HOH . L 6 HOH A 30 430 417 HOH HOH . L 6 HOH A 31 431 473 HOH HOH . L 6 HOH A 32 432 453 HOH HOH . L 6 HOH A 33 433 423 HOH HOH . L 6 HOH A 34 434 416 HOH HOH . L 6 HOH A 35 435 424 HOH HOH . L 6 HOH A 36 436 410 HOH HOH . L 6 HOH A 37 437 432 HOH HOH . L 6 HOH A 38 438 448 HOH HOH . L 6 HOH A 39 439 422 HOH HOH . L 6 HOH A 40 440 478 HOH HOH . L 6 HOH A 41 441 454 HOH HOH . L 6 HOH A 42 442 420 HOH HOH . L 6 HOH A 43 443 433 HOH HOH . L 6 HOH A 44 444 421 HOH HOH . L 6 HOH A 45 445 431 HOH HOH . L 6 HOH A 46 446 434 HOH HOH . L 6 HOH A 47 447 415 HOH HOH . L 6 HOH A 48 448 441 HOH HOH . L 6 HOH A 49 449 409 HOH HOH . L 6 HOH A 50 450 452 HOH HOH . L 6 HOH A 51 451 468 HOH HOH . L 6 HOH A 52 452 484 HOH HOH . L 6 HOH A 53 453 465 HOH HOH . L 6 HOH A 54 454 419 HOH HOH . L 6 HOH A 55 455 447 HOH HOH . L 6 HOH A 56 456 445 HOH HOH . L 6 HOH A 57 457 474 HOH HOH . L 6 HOH A 58 458 439 HOH HOH . L 6 HOH A 59 459 413 HOH HOH . L 6 HOH A 60 460 450 HOH HOH . L 6 HOH A 61 461 456 HOH HOH . L 6 HOH A 62 462 425 HOH HOH . L 6 HOH A 63 463 412 HOH HOH . L 6 HOH A 64 464 459 HOH HOH . L 6 HOH A 65 465 437 HOH HOH . L 6 HOH A 66 466 463 HOH HOH . L 6 HOH A 67 467 460 HOH HOH . L 6 HOH A 68 468 476 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . A . B 2 -21.32 -17.947 -5.112 0.65 8.05 ? C1 RET 301 A 1 HETATM 2 C C1 RET . B . B 2 -21.226 -18.303 -5.095 0.35 8.47 ? C1 RET 301 A 1 HETATM 3 C C2 RET . A . B 2 -22.099 -18.795 -6.112 0.65 9.16 ? C2 RET 301 A 1 HETATM 4 C C2 RET . B . B 2 -21.976 -19.236 -6.038 0.35 8.65 ? C2 RET 301 A 1 HETATM 5 C C3 RET . A . B 2 -23.587 -18.846 -5.798 0.65 12.07 ? C3 RET 301 A 1 HETATM 6 C C3 RET . B . B 2 -23.471 -19.263 -5.753 0.35 11.29 ? C3 RET 301 A 1 HETATM 7 C C4 RET . A . B 2 -23.785 -19.463 -4.42 0.65 9.72 ? C4 RET 301 A 1 HETATM 8 C C4 RET . B . B 2 -23.7 -19.779 -4.339 0.35 10.77 ? C4 RET 301 A 1 HETATM 9 C C5 RET . A . B 2 -22.951 -18.71 -3.411 0.65 11.45 ? C5 RET 301 A 1 HETATM 10 C C5 RET . B . B 2 -22.889 -18.949 -3.373 0.35 11.34 ? C5 RET 301 A 1 HETATM 11 C C6 RET . A . B 2 -21.894 -17.958 -3.715 0.65 10.63 ? C6 RET 301 A 1 HETATM 12 C C6 RET . B . B 2 -21.817 -18.234 -3.707 0.35 10.94 ? C6 RET 301 A 1 HETATM 13 C C7 RET . A . B 2 -21.199 -17.261 -2.614 0.65 7.27 ? C7 RET 301 A 1 HETATM 14 C C7 RET . B . B 2 -21.178 -17.42 -2.654 0.35 6.99 ? C7 RET 301 A 1 HETATM 15 C C8 RET . A . B 2 -20.139 -16.46 -2.7 0.65 7.14 ? C8 RET 301 A 1 HETATM 16 C C8 RET . B . B 2 -20.106 -16.642 -2.778 0.35 5.94 ? C8 RET 301 A 1 HETATM 17 C C9 RET . A . B 2 -19.507 -15.853 -1.514 0.65 11.39 ? C9 RET 301 A 1 HETATM 18 C C9 RET . B . B 2 -19.552 -15.88 -1.644 0.35 11.29 ? C9 RET 301 A 1 HETATM 19 C C10 RET . A . B 2 -18.401 -15.107 -1.662 0.65 11.27 ? C10 RET 301 A 1 HETATM 20 C C10 RET . B . B 2 -18.489 -15.085 -1.834 0.35 11.4 ? C10 RET 301 A 1 HETATM 21 C C11 RET . A . B 2 -17.684 -14.47 -0.563 0.65 19.87 ? C11 RET 301 A 1 HETATM 22 C C11 RET . B . B 2 -17.876 -14.301 -0.767 0.35 18.33 ? C11 RET 301 A 1 HETATM 23 C C12 RET . A . B 2 -16.664 -13.631 -0.735 0.65 17.73 ? C12 RET 301 A 1 HETATM 24 C C12 RET . B . B 2 -16.909 -13.412 -0.978 0.35 17.5 ? C12 RET 301 A 1 HETATM 25 C C13 RET . A . B 2 -16.01 -13.162 0.5 0.65 18.91 ? C13 RET 301 A 1 HETATM 26 C C13 RET . B . B 2 -16.395 -12.733 0.225 0.35 19.48 ? C13 RET 301 A 1 HETATM 27 C C14 RET . A . B 2 -15.082 -12.196 0.528 0.65 22.89 ? C14 RET 301 A 1 HETATM 28 C C14 RET . B . B 2 -15.542 -11.701 0.191 0.35 23.17 ? C14 RET 301 A 1 HETATM 29 C C15 RET . A . B 2 -14.573 -11.426 -0.601 0.65 23.15 ? C15 RET 301 A 1 HETATM 30 C C15 RET . B . B 2 -14.964 -11.028 -0.969 0.35 23.42 ? C15 RET 301 A 1 HETATM 31 C C16 RET . A . B 2 -19.902 -18.504 -5.068 0.65 10.02 ? C16 RET 301 A 1 HETATM 32 C C16 RET . B . B 2 -19.793 -18.818 -5.015 0.35 9.87 ? C16 RET 301 A 1 HETATM 33 C C17 RET . A . B 2 -21.242 -16.533 -5.676 0.65 7.1 ? C17 RET 301 A 1 HETATM 34 C C17 RET . B . B 2 -21.18 -16.93 -5.756 0.35 7.93 ? C17 RET 301 A 1 HETATM 35 C C18 RET . A . B 2 -23.503 -18.711 -2.016 0.65 10.79 ? C18 RET 301 A 1 HETATM 36 C C18 RET . B . B 2 -23.464 -18.851 -1.991 0.35 10.89 ? C18 RET 301 A 1 HETATM 37 C C19 RET . A . B 2 -20.108 -16.077 -0.158 0.65 10.7 ? C19 RET 301 A 1 HETATM 38 C C19 RET . B . B 2 -20.18 -15.996 -0.286 0.35 10.62 ? C19 RET 301 A 1 HETATM 39 C C20 RET . A . B 2 -16.401 -13.835 1.782 0.65 17.69 ? C20 RET 301 A 1 HETATM 40 C C20 RET . B . B 2 -16.85 -13.247 1.557 0.35 14.82 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 433 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 40 #