data_7O8J
#
_model_server_result.job_id            kd-1f5CgBC6JZ03h82lhZw 
_model_server_result.datetime_utc      '2024-11-17 22:00:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7o8j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    7O8J 
#
_exptl.entry_id    7O8J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          131.78 
_cell.angle_gamma         90 
_cell.entry_id            7O8J 
_cell.length_a            104.48 
_cell.length_b            51.18 
_cell.length_c            78.33 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7O8J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 J N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             251 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              235 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.331 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 290 n n 
C10 C9 OLC doub 291 n n 
C10 C11 OLC sing 292 n n 
C9 C8 OLC sing 293 n n 
C17 C16 OLC sing 294 z n 
C11 C12 OLC sing 295 n n 
C8 C7 OLC sing 296 n n 
C24 C22 OLC sing 297 n n 
C24 O25 OLC sing 298 n n 
C16 C15 OLC sing 299 n n 
C12 C13 OLC sing 300 n n 
C7 C6 OLC sing 301 n n 
C15 C14 OLC sing 302 n n 
C13 C14 OLC sing 303 n n 
C6 C5 OLC sing 304 n n 
C5 C4 OLC sing 305 n n 
C4 C3 OLC sing 306 n n 
C3 C2 OLC sing 307 n n 
C2 C1 OLC sing 308 n n 
C21 C22 OLC sing 309 n n 
C21 O20 OLC sing 310 n n 
C1 O19 OLC doub 311 n n 
C1 O20 OLC sing 312 n n 
C22 O23 OLC sing 313 n n 
C18 H18 OLC sing 314 n n 
C18 H18A OLC sing 315 n n 
C18 H18B OLC sing 316 n n 
C10 H10 OLC sing 317 n n 
C9 H9 OLC sing 318 n n 
C17 H17 OLC sing 319 n n 
C17 H17A OLC sing 320 n n 
C11 H11 OLC sing 321 n n 
C11 H11A OLC sing 322 n n 
C8 H8 OLC sing 323 n n 
C8 H8A OLC sing 324 n n 
C24 H24 OLC sing 325 n n 
C24 H24A OLC sing 326 n n 
C16 H16 OLC sing 327 n n 
C16 H16A OLC sing 328 n n 
C12 H12 OLC sing 329 n n 
C12 H12A OLC sing 330 n n 
C7 H7 OLC sing 331 n n 
C7 H7A OLC sing 332 n n 
C15 H15 OLC sing 333 n n 
C15 H15A OLC sing 334 n n 
C13 H13 OLC sing 335 n n 
C13 H13A OLC sing 336 n n 
C6 H6 OLC sing 337 n n 
C6 H6A OLC sing 338 n n 
C14 H14 OLC sing 339 n n 
C14 H14A OLC sing 340 n n 
C5 H5 OLC sing 341 n n 
C5 H5A OLC sing 342 n n 
C4 H4 OLC sing 343 n n 
C4 H4A OLC sing 344 n n 
C3 H3 OLC sing 345 n n 
C3 H3A OLC sing 346 n n 
C2 H2 OLC sing 347 n n 
C2 H2A OLC sing 348 n n 
C21 H21 OLC sing 349 n n 
C21 H21A OLC sing 350 n n 
C22 H22 OLC sing 351 n n 
O25 HO25 OLC sing 352 n n 
O23 HO23 OLC sing 353 n n 
#
_atom_sites.entry_id                     7O8J 
_atom_sites.fract_transf_matrix[1][1]    0.009571 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008552 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019539 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01712 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 301 RET RET . 
C 3 CL A 1 302 353 CL CL . 
D 3 CL A 1 303 354 CL CL . 
E 4 OLC A 1 304 501 OLC OLC . 
F 4 OLC A 1 305 502 OLC OLC . 
G 5 OLA A 1 306 503 OLA OLA . 
H 5 OLA A 1 307 504 OLA OLA . 
I 5 OLA A 1 308 505 OLA OLA . 
J 4 OLC A 1 309 506 OLC OLC . 
K 5 OLA A 1 310 508 OLA OLA . 
L 5 OLA A 1 311 509 OLA OLA . 
M 6 HOH A 1 401 446 HOH HOH . 
M 6 HOH A 2 402 441 HOH HOH . 
M 6 HOH A 3 403 480 HOH HOH . 
M 6 HOH A 4 404 424 HOH HOH . 
M 6 HOH A 5 405 426 HOH HOH . 
M 6 HOH A 6 406 440 HOH HOH . 
M 6 HOH A 7 407 437 HOH HOH . 
M 6 HOH A 8 408 430 HOH HOH . 
M 6 HOH A 9 409 478 HOH HOH . 
M 6 HOH A 10 410 443 HOH HOH . 
M 6 HOH A 11 411 405 HOH HOH . 
M 6 HOH A 12 412 438 HOH HOH . 
M 6 HOH A 13 413 434 HOH HOH . 
M 6 HOH A 14 414 411 HOH HOH . 
M 6 HOH A 15 415 409 HOH HOH . 
M 6 HOH A 16 416 429 HOH HOH . 
M 6 HOH A 17 417 479 HOH HOH . 
M 6 HOH A 18 418 406 HOH HOH . 
M 6 HOH A 19 419 402 HOH HOH . 
M 6 HOH A 20 420 473 HOH HOH . 
M 6 HOH A 21 421 458 HOH HOH . 
M 6 HOH A 22 422 428 HOH HOH . 
M 6 HOH A 23 423 414 HOH HOH . 
M 6 HOH A 24 424 447 HOH HOH . 
M 6 HOH A 25 425 423 HOH HOH . 
M 6 HOH A 26 426 419 HOH HOH . 
M 6 HOH A 27 427 483 HOH HOH . 
M 6 HOH A 28 428 407 HOH HOH . 
M 6 HOH A 29 429 427 HOH HOH . 
M 6 HOH A 30 430 403 HOH HOH . 
M 6 HOH A 31 431 420 HOH HOH . 
M 6 HOH A 32 432 432 HOH HOH . 
M 6 HOH A 33 433 462 HOH HOH . 
M 6 HOH A 34 434 459 HOH HOH . 
M 6 HOH A 35 435 465 HOH HOH . 
M 6 HOH A 36 436 412 HOH HOH . 
M 6 HOH A 37 437 413 HOH HOH . 
M 6 HOH A 38 438 435 HOH HOH . 
M 6 HOH A 39 439 453 HOH HOH . 
M 6 HOH A 40 440 404 HOH HOH . 
M 6 HOH A 41 441 456 HOH HOH . 
M 6 HOH A 42 442 431 HOH HOH . 
M 6 HOH A 43 443 422 HOH HOH . 
M 6 HOH A 44 444 401 HOH HOH . 
M 6 HOH A 45 445 418 HOH HOH . 
M 6 HOH A 46 446 445 HOH HOH . 
M 6 HOH A 47 447 410 HOH HOH . 
M 6 HOH A 48 448 415 HOH HOH . 
M 6 HOH A 49 449 433 HOH HOH . 
M 6 HOH A 50 450 416 HOH HOH . 
M 6 HOH A 51 451 454 HOH HOH . 
M 6 HOH A 52 452 417 HOH HOH . 
M 6 HOH A 53 453 436 HOH HOH . 
M 6 HOH A 54 454 439 HOH HOH . 
M 6 HOH A 55 455 421 HOH HOH . 
M 6 HOH A 56 456 452 HOH HOH . 
M 6 HOH A 57 457 442 HOH HOH . 
M 6 HOH A 58 458 481 HOH HOH . 
M 6 HOH A 59 459 448 HOH HOH . 
M 6 HOH A 60 460 474 HOH HOH . 
M 6 HOH A 61 461 457 HOH HOH . 
M 6 HOH A 62 462 469 HOH HOH . 
M 6 HOH A 63 463 476 HOH HOH . 
M 6 HOH A 64 464 477 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . E 4 -30.107 -24.805 -1.945 1 26.75 ? C18 OLC 304 A 1 
HETATM 2 C C10 OLC . . . E 4 -31.519 -22.24 7.105 1 46.5 ? C10 OLC 304 A 1 
HETATM 3 C C9 OLC . . . E 4 -30.344 -21.831 7.557 1 48.07 ? C9 OLC 304 A 1 
HETATM 4 C C17 OLC . . . E 4 -31.479 -24.613 -1.299 1 28.3 ? C17 OLC 304 A 1 
HETATM 5 C C11 OLC . . . E 4 -31.959 -21.996 5.662 1 46.29 ? C11 OLC 304 A 1 
HETATM 6 C C8 OLC . . . E 4 -29.342 -21.083 6.675 1 41.43 ? C8 OLC 304 A 1 
HETATM 7 C C24 OLC . . . E 4 -27.218 -21.815 18.513 1 40.37 ? C24 OLC 304 A 1 
HETATM 8 C C16 OLC . . . E 4 -31.422 -25.02 0.171 1 38.48 ? C16 OLC 304 A 1 
HETATM 9 C C12 OLC . . . E 4 -31.78 -23.274 4.84 1 49.08 ? C12 OLC 304 A 1 
HETATM 10 C C7 OLC . . . E 4 -28.027 -20.898 7.433 1 37.49 ? C7 OLC 304 A 1 
HETATM 11 C C15 OLC . . . E 4 -31.418 -23.772 1.049 1 37.65 ? C15 OLC 304 A 1 
HETATM 12 C C13 OLC . . . E 4 -31.847 -22.929 3.355 1 50.83 ? C13 OLC 304 A 1 
HETATM 13 C C6 OLC . . . E 4 -28.117 -19.665 8.32 1 26.18 ? C6 OLC 304 A 1 
HETATM 14 C C14 OLC . . . E 4 -31.592 -24.177 2.513 1 41.94 ? C14 OLC 304 A 1 
HETATM 15 C C5 OLC . . . E 4 -27.398 -19.896 9.651 1 39.67 ? C5 OLC 304 A 1 
HETATM 16 C C4 OLC . . . E 4 -27.936 -18.866 10.643 1 35.49 ? C4 OLC 304 A 1 
HETATM 17 C C3 OLC . . . E 4 -27.131 -18.902 11.936 1 32.31 ? C3 OLC 304 A 1 
HETATM 18 C C2 OLC . . . E 4 -27.319 -20.267 12.588 1 35.36 ? C2 OLC 304 A 1 
HETATM 19 C C21 OLC . . . E 4 -27.367 -21.047 16.166 1 39.54 ? C21 OLC 304 A 1 
HETATM 20 C C1 OLC . . . E 4 -26.875 -20.199 14.045 1 36.54 ? C1 OLC 304 A 1 
HETATM 21 C C22 OLC . . . E 4 -26.963 -22.217 17.061 1 41.33 ? C22 OLC 304 A 1 
HETATM 22 O O19 OLC . . . E 4 -26.422 -19.194 14.48 1 38.94 ? O19 OLC 304 A 1 
HETATM 23 O O25 OLC . . . E 4 -26.127 -21.081 18.992 1 42.09 ? O25 OLC 304 A 1 
HETATM 24 O O23 OLC . . . E 4 -27.713 -23.35 16.743 1 41.95 ? O23 OLC 304 A 1 
HETATM 25 O O20 OLC . . . E 4 -27.002 -21.331 14.853 1 40.69 ? O20 OLC 304 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#