data_7O8K # _model_server_result.job_id 1UIIPl4v2awZp9V-NpEpgg _model_server_result.datetime_utc '2024-11-23 05:11:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7O8K # _exptl.entry_id 7O8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 131.78 _cell.angle_gamma 90 _cell.entry_id 7O8K _cell.length_a 104.48 _cell.length_b 51.18 _cell.length_c 78.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O8K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 251 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 235 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.34 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 394 n n C1 C6 RET sing 395 n n C1 C16 RET sing 396 n n C1 C17 RET sing 397 n n C2 C3 RET sing 398 n n C2 H21 RET sing 399 n n C2 H22 RET sing 400 n n C3 C4 RET sing 401 n n C3 H31 RET sing 402 n n C3 H32 RET sing 403 n n C4 C5 RET sing 404 n n C4 H41 RET sing 405 n n C4 H42 RET sing 406 n n C5 C6 RET doub 407 n n C5 C18 RET sing 408 n n C6 C7 RET sing 409 n n C7 C8 RET doub 410 e n C7 H7 RET sing 411 n n C8 C9 RET sing 412 n n C8 H8 RET sing 413 n n C9 C10 RET doub 414 e n C9 C19 RET sing 415 n n C10 C11 RET sing 416 n n C10 H10 RET sing 417 n n C11 C12 RET doub 418 e n C11 H11 RET sing 419 n n C12 C13 RET sing 420 n n C12 H12 RET sing 421 n n C13 C14 RET doub 422 e n C13 C20 RET sing 423 n n C14 C15 RET sing 424 n n C14 H14 RET sing 425 n n C15 O1 RET doub 426 n n C15 H15 RET sing 427 n n C16 H161 RET sing 428 n n C16 H162 RET sing 429 n n C16 H163 RET sing 430 n n C17 H171 RET sing 431 n n C17 H172 RET sing 432 n n C17 H173 RET sing 433 n n C18 H181 RET sing 434 n n C18 H182 RET sing 435 n n C18 H183 RET sing 436 n n C19 H191 RET sing 437 n n C19 H192 RET sing 438 n n C19 H193 RET sing 439 n n C20 H201 RET sing 440 n n C20 H202 RET sing 441 n n C20 H203 RET sing 442 n n # _atom_sites.entry_id 7O8K _atom_sites.fract_transf_matrix[1][1] 0.009571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008552 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 OLC A 1 302 501 OLC OLC . D 3 OLC A 1 303 502 OLC OLC . E 4 OLA A 1 304 503 OLA OLA . F 4 OLA A 1 305 505 OLA OLA . G 3 OLC A 1 306 506 OLC OLC . H 4 OLA A 1 307 508 OLA OLA . I 4 OLA A 1 308 509 OLA OLA . J 5 HOH A 1 401 465 HOH HOH . J 5 HOH A 2 402 411 HOH HOH . J 5 HOH A 3 403 430 HOH HOH . J 5 HOH A 4 404 429 HOH HOH . J 5 HOH A 5 405 405 HOH HOH . J 5 HOH A 6 406 438 HOH HOH . J 5 HOH A 7 407 480 HOH HOH . J 5 HOH A 8 408 406 HOH HOH . J 5 HOH A 9 409 426 HOH HOH . J 5 HOH A 10 410 419 HOH HOH . J 5 HOH A 11 411 482 HOH HOH . J 5 HOH A 12 412 402 HOH HOH . J 5 HOH A 13 413 404 HOH HOH . J 5 HOH A 14 414 427 HOH HOH . J 5 HOH A 15 415 414 HOH HOH . J 5 HOH A 16 416 401 HOH HOH . J 5 HOH A 17 417 428 HOH HOH . J 5 HOH A 18 418 408 HOH HOH . J 5 HOH A 19 419 403 HOH HOH . J 5 HOH A 20 420 409 HOH HOH . J 5 HOH A 21 421 441 HOH HOH . J 5 HOH A 22 422 417 HOH HOH . J 5 HOH A 23 423 410 HOH HOH . J 5 HOH A 24 424 415 HOH HOH . J 5 HOH A 25 425 434 HOH HOH . J 5 HOH A 26 426 442 HOH HOH . J 5 HOH A 27 427 436 HOH HOH . J 5 HOH A 28 428 435 HOH HOH . J 5 HOH A 29 429 483 HOH HOH . J 5 HOH A 30 430 454 HOH HOH . J 5 HOH A 31 431 460 HOH HOH . J 5 HOH A 32 432 423 HOH HOH . J 5 HOH A 33 433 422 HOH HOH . J 5 HOH A 34 434 424 HOH HOH . J 5 HOH A 35 435 420 HOH HOH . J 5 HOH A 36 436 412 HOH HOH . J 5 HOH A 37 437 431 HOH HOH . J 5 HOH A 38 438 456 HOH HOH . J 5 HOH A 39 439 418 HOH HOH . J 5 HOH A 40 440 445 HOH HOH . J 5 HOH A 41 441 425 HOH HOH . J 5 HOH A 42 442 453 HOH HOH . J 5 HOH A 43 443 437 HOH HOH . J 5 HOH A 44 444 468 HOH HOH . J 5 HOH A 45 445 444 HOH HOH . J 5 HOH A 46 446 413 HOH HOH . J 5 HOH A 47 447 439 HOH HOH . J 5 HOH A 48 448 421 HOH HOH . J 5 HOH A 49 449 474 HOH HOH . J 5 HOH A 50 450 448 HOH HOH . J 5 HOH A 51 451 481 HOH HOH . J 5 HOH A 52 452 463 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 -21.242 -18.318 -5.071 1 22.82 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 -21.956 -19.212 -6.108 1 22.7 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 -23.433 -19.328 -5.826 1 23.85 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 -23.636 -19.939 -4.455 1 21.86 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 -22.816 -19.176 -3.44 1 22.7 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 -21.826 -18.338 -3.688 1 21.07 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 -21.156 -17.611 -2.569 1 21.83 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 -20.165 -16.737 -2.676 1 20.44 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 -19.54 -16.06 -1.525 1 23.43 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 -18.453 -15.337 -1.638 1 23.23 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 -17.708 -14.633 -0.617 1 25.92 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 -16.734 -13.753 -0.848 1 25.45 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 -16.047 -13.216 0.37 1 27.01 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 -15.135 -12.226 0.37 1 26.73 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 -14.693 -11.482 -0.863 1 25.93 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 -19.812 -18.799 -4.98 1 21.64 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 -21.273 -16.879 -5.613 1 21.2 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 -23.458 -19.286 -2.084 1 21.72 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 -20.218 -16.203 -0.177 1 24.13 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 -16.373 -13.836 1.675 1 26.07 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #