data_7O8L # _model_server_result.job_id z-kPQkIIoJvIY_Gx8-HKDg _model_server_result.datetime_utc '2024-11-26 21:12:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o8l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7O8L # _exptl.entry_id 7O8L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 131.78 _cell.angle_gamma 90 _cell.entry_id 7O8L _cell.length_a 104.48 _cell.length_b 51.18 _cell.length_c 78.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O8L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 251 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 235 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.328 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 290 n n C10 C9 OLC doub 291 n n C10 C11 OLC sing 292 n n C9 C8 OLC sing 293 n n C17 C16 OLC sing 294 z n C11 C12 OLC sing 295 n n C8 C7 OLC sing 296 n n C24 C22 OLC sing 297 n n C24 O25 OLC sing 298 n n C16 C15 OLC sing 299 n n C12 C13 OLC sing 300 n n C7 C6 OLC sing 301 n n C15 C14 OLC sing 302 n n C13 C14 OLC sing 303 n n C6 C5 OLC sing 304 n n C5 C4 OLC sing 305 n n C4 C3 OLC sing 306 n n C3 C2 OLC sing 307 n n C2 C1 OLC sing 308 n n C21 C22 OLC sing 309 n n C21 O20 OLC sing 310 n n C1 O19 OLC doub 311 n n C1 O20 OLC sing 312 n n C22 O23 OLC sing 313 n n C18 H18 OLC sing 314 n n C18 H18A OLC sing 315 n n C18 H18B OLC sing 316 n n C10 H10 OLC sing 317 n n C9 H9 OLC sing 318 n n C17 H17 OLC sing 319 n n C17 H17A OLC sing 320 n n C11 H11 OLC sing 321 n n C11 H11A OLC sing 322 n n C8 H8 OLC sing 323 n n C8 H8A OLC sing 324 n n C24 H24 OLC sing 325 n n C24 H24A OLC sing 326 n n C16 H16 OLC sing 327 n n C16 H16A OLC sing 328 n n C12 H12 OLC sing 329 n n C12 H12A OLC sing 330 n n C7 H7 OLC sing 331 n n C7 H7A OLC sing 332 n n C15 H15 OLC sing 333 n n C15 H15A OLC sing 334 n n C13 H13 OLC sing 335 n n C13 H13A OLC sing 336 n n C6 H6 OLC sing 337 n n C6 H6A OLC sing 338 n n C14 H14 OLC sing 339 n n C14 H14A OLC sing 340 n n C5 H5 OLC sing 341 n n C5 H5A OLC sing 342 n n C4 H4 OLC sing 343 n n C4 H4A OLC sing 344 n n C3 H3 OLC sing 345 n n C3 H3A OLC sing 346 n n C2 H2 OLC sing 347 n n C2 H2A OLC sing 348 n n C21 H21 OLC sing 349 n n C21 H21A OLC sing 350 n n C22 H22 OLC sing 351 n n O25 HO25 OLC sing 352 n n O23 HO23 OLC sing 353 n n # _atom_sites.entry_id 7O8L _atom_sites.fract_transf_matrix[1][1] 0.009571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008552 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 CL A 1 302 351 CL CL . D 4 OLC A 1 303 501 OLC OLC . E 4 OLC A 1 304 502 OLC OLC . F 5 OLA A 1 305 503 OLA OLA . G 5 OLA A 1 306 504 OLA OLA . H 5 OLA A 1 307 505 OLA OLA . I 5 OLA A 1 308 507 OLA OLA . J 5 OLA A 1 309 508 OLA OLA . K 5 OLA A 1 310 509 OLA OLA . L 6 HOH A 1 401 429 HOH HOH . L 6 HOH A 2 402 438 HOH HOH . L 6 HOH A 3 403 411 HOH HOH . L 6 HOH A 4 404 426 HOH HOH . L 6 HOH A 5 405 446 HOH HOH . L 6 HOH A 6 406 405 HOH HOH . L 6 HOH A 7 407 468 HOH HOH . L 6 HOH A 8 408 414 HOH HOH . L 6 HOH A 9 409 408 HOH HOH . L 6 HOH A 10 410 428 HOH HOH . L 6 HOH A 11 411 407 HOH HOH . L 6 HOH A 12 412 441 HOH HOH . L 6 HOH A 13 413 432 HOH HOH . L 6 HOH A 14 414 402 HOH HOH . L 6 HOH A 15 415 485 HOH HOH . L 6 HOH A 16 416 464 HOH HOH . L 6 HOH A 17 417 470 HOH HOH . L 6 HOH A 18 418 406 HOH HOH . L 6 HOH A 19 419 409 HOH HOH . L 6 HOH A 20 420 422 HOH HOH . L 6 HOH A 21 421 447 HOH HOH . L 6 HOH A 22 422 462 HOH HOH . L 6 HOH A 23 423 443 HOH HOH . L 6 HOH A 24 424 434 HOH HOH . L 6 HOH A 25 425 442 HOH HOH . L 6 HOH A 26 426 435 HOH HOH . L 6 HOH A 27 427 401 HOH HOH . L 6 HOH A 28 428 430 HOH HOH . L 6 HOH A 29 429 403 HOH HOH . L 6 HOH A 30 430 418 HOH HOH . L 6 HOH A 31 431 419 HOH HOH . L 6 HOH A 32 432 417 HOH HOH . L 6 HOH A 33 433 416 HOH HOH . L 6 HOH A 34 434 404 HOH HOH . L 6 HOH A 35 435 423 HOH HOH . L 6 HOH A 36 436 456 HOH HOH . L 6 HOH A 37 437 424 HOH HOH . L 6 HOH A 38 438 433 HOH HOH . L 6 HOH A 39 439 410 HOH HOH . L 6 HOH A 40 440 413 HOH HOH . L 6 HOH A 41 441 455 HOH HOH . L 6 HOH A 42 442 449 HOH HOH . L 6 HOH A 43 443 415 HOH HOH . L 6 HOH A 44 444 448 HOH HOH . L 6 HOH A 45 445 436 HOH HOH . L 6 HOH A 46 446 453 HOH HOH . L 6 HOH A 47 447 425 HOH HOH . L 6 HOH A 48 448 427 HOH HOH . L 6 HOH A 49 449 420 HOH HOH . L 6 HOH A 50 450 439 HOH HOH . L 6 HOH A 51 451 412 HOH HOH . L 6 HOH A 52 452 421 HOH HOH . L 6 HOH A 53 453 431 HOH HOH . L 6 HOH A 54 454 472 HOH HOH . L 6 HOH A 55 455 459 HOH HOH . L 6 HOH A 56 456 463 HOH HOH . L 6 HOH A 57 457 477 HOH HOH . L 6 HOH A 58 458 473 HOH HOH . L 6 HOH A 59 459 461 HOH HOH . L 6 HOH A 60 460 466 HOH HOH . L 6 HOH A 61 461 474 HOH HOH . L 6 HOH A 62 462 469 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . D 4 -29.807 -25.277 -1.928 1 69.52 ? C18 OLC 303 A 1 HETATM 2 C C10 OLC . . . D 4 -31.821 -22.144 6.854 1 73.22 ? C10 OLC 303 A 1 HETATM 3 C C9 OLC . . . D 4 -30.822 -21.731 7.622 1 73.99 ? C9 OLC 303 A 1 HETATM 4 C C17 OLC . . . D 4 -31.131 -25.187 -1.172 1 67.27 ? C17 OLC 303 A 1 HETATM 5 C C11 OLC . . . D 4 -31.732 -22.172 5.329 1 64.58 ? C11 OLC 303 A 1 HETATM 6 C C8 OLC . . . D 4 -29.486 -21.238 7.062 1 70.03 ? C8 OLC 303 A 1 HETATM 7 C C24 OLC . . . D 4 -27.441 -21.07 18.821 1 69.71 ? C24 OLC 303 A 1 HETATM 8 C C16 OLC . . . D 4 -30.866 -25.312 0.326 1 62.98 ? C16 OLC 303 A 1 HETATM 9 C C12 OLC . . . D 4 -32.104 -23.572 4.832 1 65.22 ? C12 OLC 303 A 1 HETATM 10 C C7 OLC . . . D 4 -28.426 -21.295 8.16 1 73.3 ? C7 OLC 303 A 1 HETATM 11 C C15 OLC . . . D 4 -31.899 -24.497 1.101 1 64.18 ? C15 OLC 303 A 1 HETATM 12 C C13 OLC . . . D 4 -32.422 -23.519 3.34 1 72.12 ? C13 OLC 303 A 1 HETATM 13 C C6 OLC . . . D 4 -27.783 -19.922 8.348 1 62.8 ? C6 OLC 303 A 1 HETATM 14 C C14 OLC . . . D 4 -31.586 -24.559 2.596 1 73.57 ? C14 OLC 303 A 1 HETATM 15 C C5 OLC . . . D 4 -27.002 -19.936 9.658 1 59.97 ? C5 OLC 303 A 1 HETATM 16 C C4 OLC . . . D 4 -27.734 -19.043 10.654 1 68.87 ? C4 OLC 303 A 1 HETATM 17 C C3 OLC . . . D 4 -27.065 -19.17 12.015 1 60.03 ? C3 OLC 303 A 1 HETATM 18 C C2 OLC . . . D 4 -27.578 -20.429 12.708 1 67.04 ? C2 OLC 303 A 1 HETATM 19 C C21 OLC . . . D 4 -27.664 -20.651 16.369 1 63.8 ? C21 OLC 303 A 1 HETATM 20 C C1 OLC . . . D 4 -27.018 -20.417 14.124 1 65.5 ? C1 OLC 303 A 1 HETATM 21 C C22 OLC . . . D 4 -27.237 -21.664 17.433 1 69.29 ? C22 OLC 303 A 1 HETATM 22 O O19 OLC . . . D 4 -26.122 -19.683 14.373 1 70.37 ? O19 OLC 303 A 1 HETATM 23 O O25 OLC . . . D 4 -26.338 -21.391 19.627 1 77.93 ? O25 OLC 303 A 1 HETATM 24 O O23 OLC . . . D 4 -28.005 -22.825 17.278 1 66.37 ? O23 OLC 303 A 1 HETATM 25 O O20 OLC . . . D 4 -27.547 -21.253 15.113 1 68.4 ? O20 OLC 303 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #