data_7O8Z # _model_server_result.job_id m7dmMe6InPHZ10GRLirZfg _model_server_result.datetime_utc '2024-11-17 20:48:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7o8z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7O8Z # _exptl.entry_id 7O8Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 131.78 _cell.angle_gamma 90 _cell.entry_id 7O8Z _cell.length_a 104.48 _cell.length_b 51.18 _cell.length_c 78.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7O8Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 251 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 235 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.328 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 394 n n C1 C6 RET sing 395 n n C1 C16 RET sing 396 n n C1 C17 RET sing 397 n n C2 C3 RET sing 398 n n C2 H21 RET sing 399 n n C2 H22 RET sing 400 n n C3 C4 RET sing 401 n n C3 H31 RET sing 402 n n C3 H32 RET sing 403 n n C4 C5 RET sing 404 n n C4 H41 RET sing 405 n n C4 H42 RET sing 406 n n C5 C6 RET doub 407 n n C5 C18 RET sing 408 n n C6 C7 RET sing 409 n n C7 C8 RET doub 410 e n C7 H7 RET sing 411 n n C8 C9 RET sing 412 n n C8 H8 RET sing 413 n n C9 C10 RET doub 414 e n C9 C19 RET sing 415 n n C10 C11 RET sing 416 n n C10 H10 RET sing 417 n n C11 C12 RET doub 418 e n C11 H11 RET sing 419 n n C12 C13 RET sing 420 n n C12 H12 RET sing 421 n n C13 C14 RET doub 422 e n C13 C20 RET sing 423 n n C14 C15 RET sing 424 n n C14 H14 RET sing 425 n n C15 O1 RET doub 426 n n C15 H15 RET sing 427 n n C16 H161 RET sing 428 n n C16 H162 RET sing 429 n n C16 H163 RET sing 430 n n C17 H171 RET sing 431 n n C17 H172 RET sing 432 n n C17 H173 RET sing 433 n n C18 H181 RET sing 434 n n C18 H182 RET sing 435 n n C18 H183 RET sing 436 n n C19 H191 RET sing 437 n n C19 H192 RET sing 438 n n C19 H193 RET sing 439 n n C20 H201 RET sing 440 n n C20 H202 RET sing 441 n n C20 H203 RET sing 442 n n # _atom_sites.entry_id 7O8Z _atom_sites.fract_transf_matrix[1][1] 0.009571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008552 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 BR A 1 302 351 BR BR . D 3 BR A 1 303 353 BR BR . E 3 BR A 1 304 354 BR BR . F 3 BR A 1 305 355 BR BR . G 3 BR A 1 306 381 BR BR . H 3 BR A 1 307 382 BR BR . I 3 BR A 1 308 383 BR BR . J 3 BR A 1 309 384 BR BR . K 3 BR A 1 310 385 BR BR . L 4 OLC A 1 311 501 OLC OLC . M 4 OLC A 1 312 502 OLC OLC . N 5 OLA A 1 313 503 OLA OLA . O 5 OLA A 1 314 504 OLA OLA . P 5 OLA A 1 315 505 OLA OLA . Q 5 OLA A 1 316 507 OLA OLA . R 5 OLA A 1 317 508 OLA OLA . S 5 OLA A 1 318 509 OLA OLA . T 6 HOH A 1 401 446 HOH HOH . T 6 HOH A 2 402 407 HOH HOH . T 6 HOH A 3 403 429 HOH HOH . T 6 HOH A 4 404 438 HOH HOH . T 6 HOH A 5 405 411 HOH HOH . T 6 HOH A 6 406 426 HOH HOH . T 6 HOH A 7 407 468 HOH HOH . T 6 HOH A 8 408 408 HOH HOH . T 6 HOH A 9 409 409 HOH HOH . T 6 HOH A 10 410 405 HOH HOH . T 6 HOH A 11 411 414 HOH HOH . T 6 HOH A 12 412 422 HOH HOH . T 6 HOH A 13 413 428 HOH HOH . T 6 HOH A 14 414 402 HOH HOH . T 6 HOH A 15 415 430 HOH HOH . T 6 HOH A 16 416 406 HOH HOH . T 6 HOH A 17 417 464 HOH HOH . T 6 HOH A 18 418 443 HOH HOH . T 6 HOH A 19 419 432 HOH HOH . T 6 HOH A 20 420 447 HOH HOH . T 6 HOH A 21 421 401 HOH HOH . T 6 HOH A 22 422 423 HOH HOH . T 6 HOH A 23 423 403 HOH HOH . T 6 HOH A 24 424 435 HOH HOH . T 6 HOH A 25 425 418 HOH HOH . T 6 HOH A 26 426 404 HOH HOH . T 6 HOH A 27 427 434 HOH HOH . T 6 HOH A 28 428 417 HOH HOH . T 6 HOH A 29 429 419 HOH HOH . T 6 HOH A 30 430 441 HOH HOH . T 6 HOH A 31 431 416 HOH HOH . T 6 HOH A 32 432 410 HOH HOH . T 6 HOH A 33 433 424 HOH HOH . T 6 HOH A 34 434 433 HOH HOH . T 6 HOH A 35 435 455 HOH HOH . T 6 HOH A 36 436 436 HOH HOH . T 6 HOH A 37 437 413 HOH HOH . T 6 HOH A 38 438 415 HOH HOH . T 6 HOH A 39 439 425 HOH HOH . T 6 HOH A 40 440 431 HOH HOH . T 6 HOH A 41 441 420 HOH HOH . T 6 HOH A 42 442 439 HOH HOH . T 6 HOH A 43 443 421 HOH HOH . T 6 HOH A 44 444 412 HOH HOH . T 6 HOH A 45 445 472 HOH HOH . T 6 HOH A 46 446 463 HOH HOH . T 6 HOH A 47 447 466 HOH HOH . T 6 HOH A 48 448 474 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 -21.195 -18.483 -5.106 1 37.44 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 -21.873 -19.43 -6.099 1 36.6 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 -23.369 -19.375 -5.887 1 36.82 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 -23.753 -19.902 -4.506 1 38.54 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 -22.976 -19.139 -3.471 1 37.07 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 -21.828 -18.498 -3.725 1 35.21 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 -21.223 -17.697 -2.651 1 34.97 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 -20.079 -17.017 -2.745 1 36.44 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 -19.555 -16.196 -1.644 1 37.73 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 -18.442 -15.467 -1.848 1 38.83 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 -17.815 -14.589 -0.872 1 41.7 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 -16.779 -13.883 -1.343 1 40.6 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 -16.102 -12.854 -0.521 1 42.66 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 -15.207 -12.06 -1.141 1 41.81 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 -14.436 -10.975 -0.553 1 44.45 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 -19.763 -19.006 -5.063 1 36.93 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 -21.219 -17.078 -5.719 1 36.29 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 -23.566 -19.319 -2.092 1 35.78 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 -20.292 -16.163 -0.337 1 35.99 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 -16.415 -12.687 0.93 1 43.54 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #