data_7O9H
#
_model_server_result.job_id            WBCdcvs93RVo6okDinrWIw 
_model_server_result.datetime_utc      '2025-03-04 21:04:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7o9h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    7O9H 
#
_exptl.entry_id    7O9H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              683.14 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "guanosine 5'-(tetrahydrogen triphosphate) 3'-(trihydrogen diphosphate)" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7O9H 
_cell.length_a            74.48 
_cell.length_b            90.71 
_cell.length_c            106.64 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7O9H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H18 N5 O20 P5' 
_chem_comp.formula_weight    683.14 
_chem_comp.id                0O2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "guanosine 5'-(tetrahydrogen triphosphate) 3'-(trihydrogen diphosphate)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1G PG 0O2 doub 1 n n 
O2A PA 0O2 doub 2 n n 
PG O3B 0O2 sing 3 n n 
PG O2G 0O2 sing 4 n n 
PG O3G 0O2 sing 5 n n 
O3B PB 0O2 sing 6 n n 
O3A PA 0O2 sing 7 n n 
O3A PB 0O2 sing 8 n n 
O2B PB 0O2 doub 9 n n 
O1A PA 0O2 sing 10 n n 
PA O5' 0O2 sing 11 n n 
PB O1B 0O2 sing 12 n n 
O5' C5' 0O2 sing 13 n n 
C5' C4' 0O2 sing 14 n n 
C4' O4' 0O2 sing 15 n n 
C4' C3' 0O2 sing 16 n n 
O4' C1' 0O2 sing 17 n n 
O2C PC 0O2 doub 18 n n 
C8 N7 0O2 doub 19 n y 
C8 N9 0O2 sing 20 n y 
C3' C2' 0O2 sing 21 n n 
C3' O3' 0O2 sing 22 n n 
N7 C5 0O2 sing 23 n y 
C1' N9 0O2 sing 24 n n 
C1' C2' 0O2 sing 25 n n 
N9 C4 0O2 sing 26 n y 
C2' O2' 0O2 sing 27 n n 
O2D PD 0O2 doub 28 n n 
C5 C4 0O2 doub 29 n y 
C5 C6 0O2 sing 30 n n 
PC O3' 0O2 sing 31 n n 
PC O3C 0O2 sing 32 n n 
PC O1C 0O2 sing 33 n n 
C4 N3 0O2 sing 34 n n 
O6 C6 0O2 doub 35 n n 
C6 N1 0O2 sing 36 n n 
O1D PD 0O2 sing 37 n n 
O3C PD 0O2 sing 38 n n 
N3 C2 0O2 doub 39 n n 
PD O3D 0O2 sing 40 n n 
N1 C2 0O2 sing 41 n n 
C2 N2 0O2 sing 42 n n 
O1D H1 0O2 sing 43 n n 
O3D H2 0O2 sing 44 n n 
O2G H3 0O2 sing 45 n n 
O3G H4 0O2 sing 46 n n 
O1B H5 0O2 sing 47 n n 
O1A H6 0O2 sing 48 n n 
C5' H7 0O2 sing 49 n n 
C5' H8 0O2 sing 50 n n 
C4' H9 0O2 sing 51 n n 
C3' H10 0O2 sing 52 n n 
C2' H11 0O2 sing 53 n n 
O2' H12 0O2 sing 54 n n 
C1' H13 0O2 sing 55 n n 
C8 H14 0O2 sing 56 n n 
N2 H15 0O2 sing 57 n n 
N2 H16 0O2 sing 58 n n 
O1C H18 0O2 sing 59 n n 
N1 H19 0O2 sing 60 n n 
#
_atom_sites.entry_id                     7O9H 
_atom_sites.fract_transf_matrix[1][1]    0.013426 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011024 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009377 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 0O2 A 1 601 501 0O2 C1Z . 
D 2 0O2 B 1 601 502 0O2 C1Z . 
E 3 HOH A 1 701 65 HOH HOH . 
E 3 HOH A 2 702 66 HOH HOH . 
E 3 HOH A 3 703 28 HOH HOH . 
E 3 HOH A 4 704 58 HOH HOH . 
E 3 HOH A 5 705 53 HOH HOH . 
E 3 HOH A 6 706 42 HOH HOH . 
E 3 HOH A 7 707 54 HOH HOH . 
E 3 HOH A 8 708 99 HOH HOH . 
E 3 HOH A 9 709 16 HOH HOH . 
E 3 HOH A 10 710 67 HOH HOH . 
E 3 HOH A 11 711 38 HOH HOH . 
E 3 HOH A 12 712 86 HOH HOH . 
E 3 HOH A 13 713 24 HOH HOH . 
E 3 HOH A 14 714 56 HOH HOH . 
E 3 HOH A 15 715 82 HOH HOH . 
E 3 HOH A 16 716 87 HOH HOH . 
E 3 HOH A 17 717 8 HOH HOH . 
E 3 HOH A 18 718 46 HOH HOH . 
E 3 HOH A 19 719 62 HOH HOH . 
E 3 HOH A 20 720 15 HOH HOH . 
E 3 HOH A 21 721 4 HOH HOH . 
E 3 HOH A 22 722 7 HOH HOH . 
E 3 HOH A 23 723 21 HOH HOH . 
E 3 HOH A 24 724 17 HOH HOH . 
E 3 HOH A 25 725 18 HOH HOH . 
E 3 HOH A 26 726 69 HOH HOH . 
E 3 HOH A 27 727 9 HOH HOH . 
E 3 HOH A 28 728 94 HOH HOH . 
E 3 HOH A 29 729 55 HOH HOH . 
E 3 HOH A 30 730 40 HOH HOH . 
E 3 HOH A 31 731 14 HOH HOH . 
E 3 HOH A 32 732 90 HOH HOH . 
E 3 HOH A 33 733 103 HOH HOH . 
E 3 HOH A 34 734 23 HOH HOH . 
E 3 HOH A 35 735 45 HOH HOH . 
E 3 HOH A 36 736 37 HOH HOH . 
E 3 HOH A 37 737 33 HOH HOH . 
E 3 HOH A 38 738 32 HOH HOH . 
E 3 HOH A 39 739 98 HOH HOH . 
E 3 HOH A 40 740 51 HOH HOH . 
E 3 HOH A 41 741 85 HOH HOH . 
E 3 HOH A 42 742 75 HOH HOH . 
E 3 HOH A 43 743 95 HOH HOH . 
E 3 HOH A 44 744 79 HOH HOH . 
E 3 HOH A 45 745 48 HOH HOH . 
E 3 HOH A 46 746 76 HOH HOH . 
E 3 HOH A 47 747 77 HOH HOH . 
E 3 HOH A 48 748 92 HOH HOH . 
E 3 HOH A 49 749 63 HOH HOH . 
F 3 HOH B 1 701 35 HOH HOH . 
F 3 HOH B 2 702 20 HOH HOH . 
F 3 HOH B 3 703 5 HOH HOH . 
F 3 HOH B 4 704 11 HOH HOH . 
F 3 HOH B 5 705 84 HOH HOH . 
F 3 HOH B 6 706 81 HOH HOH . 
F 3 HOH B 7 707 13 HOH HOH . 
F 3 HOH B 8 708 29 HOH HOH . 
F 3 HOH B 9 709 64 HOH HOH . 
F 3 HOH B 10 710 83 HOH HOH . 
F 3 HOH B 11 711 6 HOH HOH . 
F 3 HOH B 12 712 2 HOH HOH . 
F 3 HOH B 13 713 19 HOH HOH . 
F 3 HOH B 14 714 3 HOH HOH . 
F 3 HOH B 15 715 41 HOH HOH . 
F 3 HOH B 16 716 97 HOH HOH . 
F 3 HOH B 17 717 68 HOH HOH . 
F 3 HOH B 18 718 12 HOH HOH . 
F 3 HOH B 19 719 31 HOH HOH . 
F 3 HOH B 20 720 43 HOH HOH . 
F 3 HOH B 21 721 10 HOH HOH . 
F 3 HOH B 22 722 88 HOH HOH . 
F 3 HOH B 23 723 50 HOH HOH . 
F 3 HOH B 24 724 1 HOH HOH . 
F 3 HOH B 25 725 30 HOH HOH . 
F 3 HOH B 26 726 27 HOH HOH . 
F 3 HOH B 27 727 25 HOH HOH . 
F 3 HOH B 28 728 26 HOH HOH . 
F 3 HOH B 29 729 60 HOH HOH . 
F 3 HOH B 30 730 47 HOH HOH . 
F 3 HOH B 31 731 44 HOH HOH . 
F 3 HOH B 32 732 59 HOH HOH . 
F 3 HOH B 33 733 71 HOH HOH . 
F 3 HOH B 34 734 39 HOH HOH . 
F 3 HOH B 35 735 80 HOH HOH . 
F 3 HOH B 36 736 96 HOH HOH . 
F 3 HOH B 37 737 70 HOH HOH . 
F 3 HOH B 38 738 91 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PD 0O2 . . . D 2 39.987 -30.044 5.239 1 127.05 ? PD 0O2 601 B 1 
HETATM 2 O O1D 0O2 . . . D 2 39.741 -30.687 6.581 1 135.16 ? O1D 0O2 601 B 1 
HETATM 3 O O2D 0O2 . . . D 2 38.895 -30.335 4.238 1 96.36 ? O2D 0O2 601 B 1 
HETATM 4 O O3D 0O2 . . . D 2 40.3 -28.574 5.347 1 95.37 ? O3D 0O2 601 B 1 
HETATM 5 P PG 0O2 . . . D 2 41.015 -41.615 1.073 1 104.87 ? PG 0O2 601 B 1 
HETATM 6 O O1G 0O2 . . . D 2 40.66 -42.658 0.048 1 51.19 ? O1G 0O2 601 B 1 
HETATM 7 O O2G 0O2 . . . D 2 39.821 -41.12 1.841 1 49.41 ? O2G 0O2 601 B 1 
HETATM 8 O O3G 0O2 . . . D 2 42.108 -42.088 1.989 1 59.66 ? O3G 0O2 601 B 1 
HETATM 9 P PB 0O2 . . . D 2 42.885 -39.509 0.163 1 44.26 ? PB 0O2 601 B 1 
HETATM 10 O O1B 0O2 . . . D 2 43.612 -39.93 1.363 1 50.42 ? O1B 0O2 601 B 1 
HETATM 11 O O2B 0O2 . . . D 2 43.562 -39.676 -1.137 1 45.39 ? O2B 0O2 601 B 1 
HETATM 12 O O3B 0O2 . . . D 2 41.513 -40.329 0.203 1 52.44 ? O3B 0O2 601 B 1 
HETATM 13 O O3A 0O2 . . . D 2 42.463 -37.978 0.363 1 45.96 ? O3A 0O2 601 B 1 
HETATM 14 P PA 0O2 . . . D 2 41.082 -37.182 0.501 1 45.42 ? PA 0O2 601 B 1 
HETATM 15 O O1A 0O2 . . . D 2 40.298 -37.403 -0.737 1 43.78 ? O1A 0O2 601 B 1 
HETATM 16 O O2A 0O2 . . . D 2 40.431 -37.536 1.79 1 50.85 ? O2A 0O2 601 B 1 
HETATM 17 O O5' 0O2 . . . D 2 41.547 -35.656 0.535 1 53.95 ? O5' 0O2 601 B 1 
HETATM 18 C C5' 0O2 . . . D 2 42.716 -35.233 1.271 1 53.68 ? C5' 0O2 601 B 1 
HETATM 19 C C4' 0O2 . . . D 2 42.787 -33.725 1.281 1 55.69 ? C4' 0O2 601 B 1 
HETATM 20 O O4' 0O2 . . . D 2 43.062 -33.238 -0.055 1 56.92 ? O4' 0O2 601 B 1 
HETATM 21 C C3' 0O2 . . . D 2 41.531 -32.986 1.745 1 64.37 ? C3' 0O2 601 B 1 
HETATM 22 O O3' 0O2 . . . D 2 41.901 -31.915 2.6 1 74.16 ? O3' 0O2 601 B 1 
HETATM 23 C C2' 0O2 . . . D 2 40.993 -32.35 0.461 1 60.27 ? C2' 0O2 601 B 1 
HETATM 24 O O2' 0O2 . . . D 2 40.282 -31.157 0.702 1 66.44 ? O2' 0O2 601 B 1 
HETATM 25 C C1' 0O2 . . . D 2 42.299 -32.073 -0.269 1 56.45 ? C1' 0O2 601 B 1 
HETATM 26 N N9 0O2 . . . D 2 42.171 -31.849 -1.708 1 50.18 ? N9 0O2 601 B 1 
HETATM 27 C C8 0O2 . . . D 2 41.801 -32.763 -2.669 1 47.46 ? C8 0O2 601 B 1 
HETATM 28 N N7 0O2 . . . D 2 41.793 -32.256 -3.879 1 47.22 ? N7 0O2 601 B 1 
HETATM 29 C C5 0O2 . . . D 2 42.198 -30.931 -3.728 1 45.33 ? C5 0O2 601 B 1 
HETATM 30 C C6 0O2 . . . D 2 42.385 -29.918 -4.648 1 43.94 ? C6 0O2 601 B 1 
HETATM 31 O O6 0O2 . . . D 2 42.201 -30.071 -5.859 1 45.83 ? O6 0O2 601 B 1 
HETATM 32 N N1 0O2 . . . D 2 42.801 -28.689 -4.232 1 42.26 ? N1 0O2 601 B 1 
HETATM 33 C C2 0O2 . . . D 2 43.016 -28.474 -2.939 1 44.3 ? C2 0O2 601 B 1 
HETATM 34 N N2 0O2 . . . D 2 43.42 -27.277 -2.522 1 48.52 ? N2 0O2 601 B 1 
HETATM 35 N N3 0O2 . . . D 2 42.839 -29.449 -2.004 1 44.31 ? N3 0O2 601 B 1 
HETATM 36 C C4 0O2 . . . D 2 42.432 -30.676 -2.388 1 46.12 ? C4 0O2 601 B 1 
HETATM 37 P PC 0O2 . . . D 2 41.618 -32.22 4.145 1 84.55 ? PC 0O2 601 B 1 
HETATM 38 O O1C 0O2 . . . D 2 42.87 -32.719 4.781 1 78.49 ? O1C 0O2 601 B 1 
HETATM 39 O O2C 0O2 . . . D 2 40.386 -33.046 4.287 1 78.83 ? O2C 0O2 601 B 1 
HETATM 40 O O3C 0O2 . . . D 2 41.319 -30.742 4.672 1 88.06 ? O3C 0O2 601 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#