data_7OA4 # _model_server_result.job_id FMD7qQ36QQ5zoLbJ54tzKg _model_server_result.datetime_utc '2024-11-28 06:16:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oa4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":204}' # _entry.id 7OA4 # _exptl.entry_id 7OA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OA4 _cell.length_a 124.79 _cell.length_b 124.79 _cell.length_c 295.74 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,W 1 1 B,J,K,L,M,X 2 1 C,N,O,P,Q,R,Y 3 1 D,S,T,U,V,Z 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 L N N ? 4 M N N ? 4 Q N N ? 4 R N N ? 4 U N N ? 4 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 AAA CYS 20 1_555 C SG CYS 21 DDD CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf2 B SG CYS 21 BBB CYS 20 1_555 D SG CYS 21 GGG CYS 20 10_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc1 A NE2 HIS 35 AAA HIS 34 1_555 H MN MN . AAA MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc2 A OD1 ASP 53 AAA ASP 52 1_555 I MN MN . AAA MN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc3 A OD2 ASP 80 AAA ASP 79 1_555 H MN MN . AAA MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 A OD1 ASP 80 AAA ASP 79 1_555 I MN MN . AAA MN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc5 A OD1 ASP 93 AAA ASP 92 1_555 H MN MN . AAA MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 A O TYR 94 AAA TYR 93 1_555 H MN MN . AAA MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc7 E O28 0N8 . AAA 0N8 201 1_555 H MN MN . AAA MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc8 E O25 0N8 . AAA 0N8 201 1_555 H MN MN . AAA MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc9 E O27 0N8 . AAA 0N8 201 1_555 I MN MN . AAA MN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc10 E O28 0N8 . AAA 0N8 201 1_555 I MN MN . AAA MN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc11 I MN MN . AAA MN 205 1_555 W O HOH . AAA HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc12 B NE2 HIS 35 BBB HIS 34 1_555 L MN MN . BBB MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc13 B OD1 ASP 53 BBB ASP 52 1_555 M MN MN . BBB MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc14 B OD2 ASP 80 BBB ASP 79 1_555 L MN MN . BBB MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc15 B OD1 ASP 80 BBB ASP 79 1_555 M MN MN . BBB MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc16 B OD1 ASP 93 BBB ASP 92 1_555 L MN MN . BBB MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc17 B O TYR 94 BBB TYR 93 1_555 L MN MN . BBB MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc18 J O28 0N8 . BBB 0N8 201 1_555 L MN MN . BBB MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc19 J O25 0N8 . BBB 0N8 201 1_555 L MN MN . BBB MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? metalc ? metalc20 J O27 0N8 . BBB 0N8 201 1_555 M MN MN . BBB MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc21 J O28 0N8 . BBB 0N8 201 1_555 M MN MN . BBB MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc22 M MN MN . BBB MN 204 1_555 X O HOH . BBB HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc23 M MN MN . BBB MN 204 1_555 X O HOH . BBB HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc24 C NE2 HIS 35 DDD HIS 34 1_555 Q MN MN . DDD MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc25 C OD1 ASP 53 DDD ASP 52 1_555 R MN MN . DDD MN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc26 C OD2 ASP 80 DDD ASP 79 1_555 Q MN MN . DDD MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc27 C OD1 ASP 80 DDD ASP 79 1_555 R MN MN . DDD MN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc28 C OD1 ASP 93 DDD ASP 92 1_555 Q MN MN . DDD MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc29 C O TYR 94 DDD TYR 93 1_555 Q MN MN . DDD MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc30 N O28 0N8 . DDD 0N8 201 1_555 Q MN MN . DDD MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc31 N O25 0N8 . DDD 0N8 201 1_555 Q MN MN . DDD MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc32 N O27 0N8 . DDD 0N8 201 1_555 R MN MN . DDD MN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc33 N O28 0N8 . DDD 0N8 201 1_555 R MN MN . DDD MN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc34 R MN MN . DDD MN 205 1_555 Y O HOH . DDD HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc35 R MN MN . DDD MN 205 1_555 Y O HOH . DDD HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc36 D NE2 HIS 35 GGG HIS 34 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc37 D OD1 ASP 53 GGG ASP 52 1_555 V MN MN . GGG MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc38 D OD2 ASP 80 GGG ASP 79 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc39 D OD1 ASP 80 GGG ASP 79 1_555 V MN MN . GGG MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc40 D OD2 ASP 93 GGG ASP 92 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc41 D O TYR 94 GGG TYR 93 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc42 S O28 0N8 . GGG 0N8 201 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc43 S O26 0N8 . GGG 0N8 201 1_555 U MN MN . GGG MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc44 S O27 0N8 . GGG 0N8 201 1_555 V MN MN . GGG MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc45 S O28 0N8 . GGG 0N8 201 1_555 V MN MN . GGG MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc46 V MN MN . GGG MN 204 1_555 Z O HOH . GGG HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc47 V MN MN . GGG MN 204 1_555 Z O HOH . GGG HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7OA4 _atom_sites.fract_transf_matrix[1][1] 0.008013 _atom_sites.fract_transf_matrix[1][2] 0.004627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 0N8 AAA 1 201 201 0N8 LIG . F 3 FMT AAA 1 202 203 FMT FMT . G 3 FMT AAA 1 203 204 FMT FMT . H 4 MN AAA 1 204 5 MN MN . I 4 MN AAA 1 205 6 MN MN . J 2 0N8 BBB 1 201 201 0N8 LIG . K 3 FMT BBB 1 202 202 FMT FMT . L 4 MN BBB 1 203 5 MN MN . M 4 MN BBB 1 204 6 MN MN . N 2 0N8 DDD 1 201 201 0N8 LIG . O 3 FMT DDD 1 202 203 FMT FMT . P 3 FMT DDD 1 203 204 FMT FMT . Q 4 MN DDD 1 204 5 MN MN . R 4 MN DDD 1 205 6 MN MN . S 2 0N8 GGG 1 201 201 0N8 LIG . T 3 FMT GGG 1 202 202 FMT FMT . U 4 MN GGG 1 203 5 MN MN . V 4 MN GGG 1 204 6 MN MN . W 5 HOH AAA 1 301 37 HOH HOH . W 5 HOH AAA 2 302 129 HOH HOH . W 5 HOH AAA 3 303 137 HOH HOH . W 5 HOH AAA 4 304 40 HOH HOH . W 5 HOH AAA 5 305 122 HOH HOH . W 5 HOH AAA 6 306 64 HOH HOH . W 5 HOH AAA 7 307 12 HOH HOH . W 5 HOH AAA 8 308 55 HOH HOH . W 5 HOH AAA 9 309 53 HOH HOH . W 5 HOH AAA 10 310 86 HOH HOH . W 5 HOH AAA 11 311 138 HOH HOH . W 5 HOH AAA 12 312 2 HOH HOH . W 5 HOH AAA 13 313 15 HOH HOH . W 5 HOH AAA 14 314 17 HOH HOH . W 5 HOH AAA 15 315 68 HOH HOH . W 5 HOH AAA 16 316 110 HOH HOH . W 5 HOH AAA 17 317 92 HOH HOH . W 5 HOH AAA 18 318 46 HOH HOH . W 5 HOH AAA 19 319 111 HOH HOH . W 5 HOH AAA 20 320 116 HOH HOH . W 5 HOH AAA 21 321 127 HOH HOH . W 5 HOH AAA 22 322 50 HOH HOH . W 5 HOH AAA 23 323 141 HOH HOH . W 5 HOH AAA 24 324 85 HOH HOH . W 5 HOH AAA 25 325 136 HOH HOH . W 5 HOH AAA 26 326 73 HOH HOH . W 5 HOH AAA 27 327 105 HOH HOH . W 5 HOH AAA 28 328 143 HOH HOH . X 5 HOH BBB 1 301 139 HOH HOH . X 5 HOH BBB 2 302 47 HOH HOH . X 5 HOH BBB 3 303 4 HOH HOH . X 5 HOH BBB 4 304 109 HOH HOH . X 5 HOH BBB 5 305 35 HOH HOH . X 5 HOH BBB 6 306 84 HOH HOH . X 5 HOH BBB 7 307 108 HOH HOH . X 5 HOH BBB 8 308 6 HOH HOH . X 5 HOH BBB 9 309 42 HOH HOH . X 5 HOH BBB 10 310 119 HOH HOH . X 5 HOH BBB 11 311 133 HOH HOH . X 5 HOH BBB 12 312 89 HOH HOH . X 5 HOH BBB 13 313 36 HOH HOH . X 5 HOH BBB 14 314 43 HOH HOH . X 5 HOH BBB 15 315 33 HOH HOH . X 5 HOH BBB 16 316 22 HOH HOH . X 5 HOH BBB 17 317 70 HOH HOH . X 5 HOH BBB 18 318 121 HOH HOH . X 5 HOH BBB 19 319 103 HOH HOH . X 5 HOH BBB 20 320 14 HOH HOH . X 5 HOH BBB 21 321 79 HOH HOH . X 5 HOH BBB 22 322 9 HOH HOH . X 5 HOH BBB 23 323 39 HOH HOH . X 5 HOH BBB 24 324 96 HOH HOH . X 5 HOH BBB 25 325 56 HOH HOH . X 5 HOH BBB 26 326 124 HOH HOH . X 5 HOH BBB 27 327 24 HOH HOH . X 5 HOH BBB 28 328 30 HOH HOH . X 5 HOH BBB 29 329 93 HOH HOH . X 5 HOH BBB 30 330 61 HOH HOH . X 5 HOH BBB 31 331 16 HOH HOH . X 5 HOH BBB 32 332 126 HOH HOH . Y 5 HOH DDD 1 301 118 HOH HOH . Y 5 HOH DDD 2 302 83 HOH HOH . Y 5 HOH DDD 3 303 88 HOH HOH . Y 5 HOH DDD 4 304 23 HOH HOH . Y 5 HOH DDD 5 305 114 HOH HOH . Y 5 HOH DDD 6 306 123 HOH HOH . Y 5 HOH DDD 7 307 25 HOH HOH . Y 5 HOH DDD 8 308 65 HOH HOH . Y 5 HOH DDD 9 309 19 HOH HOH . Y 5 HOH DDD 10 310 75 HOH HOH . Y 5 HOH DDD 11 311 48 HOH HOH . Y 5 HOH DDD 12 312 90 HOH HOH . Y 5 HOH DDD 13 313 1 HOH HOH . Y 5 HOH DDD 14 314 112 HOH HOH . Y 5 HOH DDD 15 315 29 HOH HOH . Y 5 HOH DDD 16 316 3 HOH HOH . Y 5 HOH DDD 17 317 140 HOH HOH . Y 5 HOH DDD 18 318 71 HOH HOH . Y 5 HOH DDD 19 319 102 HOH HOH . Y 5 HOH DDD 20 320 8 HOH HOH . Y 5 HOH DDD 21 321 20 HOH HOH . Y 5 HOH DDD 22 322 130 HOH HOH . Y 5 HOH DDD 23 323 28 HOH HOH . Y 5 HOH DDD 24 324 26 HOH HOH . Y 5 HOH DDD 25 325 125 HOH HOH . Y 5 HOH DDD 26 326 21 HOH HOH . Y 5 HOH DDD 27 327 59 HOH HOH . Y 5 HOH DDD 28 328 80 HOH HOH . Z 5 HOH GGG 1 301 72 HOH HOH . Z 5 HOH GGG 2 302 44 HOH HOH . Z 5 HOH GGG 3 303 58 HOH HOH . Z 5 HOH GGG 4 304 77 HOH HOH . Z 5 HOH GGG 5 305 100 HOH HOH . Z 5 HOH GGG 6 306 74 HOH HOH . Z 5 HOH GGG 7 307 115 HOH HOH . Z 5 HOH GGG 8 308 142 HOH HOH . Z 5 HOH GGG 9 309 31 HOH HOH . Z 5 HOH GGG 10 310 107 HOH HOH . Z 5 HOH GGG 11 311 54 HOH HOH . Z 5 HOH GGG 12 312 87 HOH HOH . Z 5 HOH GGG 13 313 95 HOH HOH . Z 5 HOH GGG 14 314 144 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x -83.014 _atom_site.Cartn_y 32.162 _atom_site.Cartn_z -19.958 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.37 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 204 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #