data_7OAS # _model_server_result.job_id ZI4GNslxq6oAgpmiTzs0XA _model_server_result.datetime_utc '2024-12-16 00:27:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oas # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7OAS # _exptl.entry_id 7OAS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OAS _cell.length_a 58.295 _cell.length_b 58.295 _cell.length_c 142.851 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 286 n n N HN1 SAH sing 287 n n N HN2 SAH sing 288 n n CA CB SAH sing 289 n n CA C SAH sing 290 n n CA HA SAH sing 291 n n CB CG SAH sing 292 n n CB HB1 SAH sing 293 n n CB HB2 SAH sing 294 n n CG SD SAH sing 295 n n CG HG1 SAH sing 296 n n CG HG2 SAH sing 297 n n SD C5' SAH sing 298 n n C O SAH doub 299 n n C OXT SAH sing 300 n n OXT HXT SAH sing 301 n n C5' C4' SAH sing 302 n n C5' "H5'1" SAH sing 303 n n C5' "H5'2" SAH sing 304 n n C4' O4' SAH sing 305 n n C4' C3' SAH sing 306 n n C4' H4' SAH sing 307 n n O4' C1' SAH sing 308 n n C3' O3' SAH sing 309 n n C3' C2' SAH sing 310 n n C3' H3' SAH sing 311 n n O3' HO3' SAH sing 312 n n C2' O2' SAH sing 313 n n C2' C1' SAH sing 314 n n C2' H2' SAH sing 315 n n O2' HO2' SAH sing 316 n n C1' N9 SAH sing 317 n n C1' H1' SAH sing 318 n n N9 C8 SAH sing 319 n y N9 C4 SAH sing 320 n y C8 N7 SAH doub 321 n y C8 H8 SAH sing 322 n n N7 C5 SAH sing 323 n y C5 C6 SAH sing 324 n y C5 C4 SAH doub 325 n y C6 N6 SAH sing 326 n n C6 N1 SAH doub 327 n y N6 HN61 SAH sing 328 n n N6 HN62 SAH sing 329 n n N1 C2 SAH sing 330 n y C2 N3 SAH doub 331 n y C2 H2 SAH sing 332 n n N3 C4 SAH sing 333 n y # _atom_sites.entry_id 7OAS _atom_sites.fract_transf_matrix[1][1] 0.017154 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017154 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 301 SAH SAH . C 3 EDO A 1 302 401 EDO EDO . D 4 HOH A 1 401 64 HOH HOH . D 4 HOH A 2 402 98 HOH HOH . D 4 HOH A 3 403 141 HOH HOH . D 4 HOH A 4 404 127 HOH HOH . D 4 HOH A 5 405 128 HOH HOH . D 4 HOH A 6 406 102 HOH HOH . D 4 HOH A 7 407 21 HOH HOH . D 4 HOH A 8 408 49 HOH HOH . D 4 HOH A 9 409 150 HOH HOH . D 4 HOH A 10 410 2 HOH HOH . D 4 HOH A 11 411 129 HOH HOH . D 4 HOH A 12 412 61 HOH HOH . D 4 HOH A 13 413 95 HOH HOH . D 4 HOH A 14 414 140 HOH HOH . D 4 HOH A 15 415 68 HOH HOH . D 4 HOH A 16 416 52 HOH HOH . D 4 HOH A 17 417 112 HOH HOH . D 4 HOH A 18 418 92 HOH HOH . D 4 HOH A 19 419 60 HOH HOH . D 4 HOH A 20 420 91 HOH HOH . D 4 HOH A 21 421 72 HOH HOH . D 4 HOH A 22 422 161 HOH HOH . D 4 HOH A 23 423 12 HOH HOH . D 4 HOH A 24 424 20 HOH HOH . D 4 HOH A 25 425 124 HOH HOH . D 4 HOH A 26 426 174 HOH HOH . D 4 HOH A 27 427 28 HOH HOH . D 4 HOH A 28 428 166 HOH HOH . D 4 HOH A 29 429 117 HOH HOH . D 4 HOH A 30 430 25 HOH HOH . D 4 HOH A 31 431 32 HOH HOH . D 4 HOH A 32 432 46 HOH HOH . D 4 HOH A 33 433 39 HOH HOH . D 4 HOH A 34 434 9 HOH HOH . D 4 HOH A 35 435 79 HOH HOH . D 4 HOH A 36 436 86 HOH HOH . D 4 HOH A 37 437 47 HOH HOH . D 4 HOH A 38 438 31 HOH HOH . D 4 HOH A 39 439 38 HOH HOH . D 4 HOH A 40 440 1 HOH HOH . D 4 HOH A 41 441 106 HOH HOH . D 4 HOH A 42 442 48 HOH HOH . D 4 HOH A 43 443 75 HOH HOH . D 4 HOH A 44 444 10 HOH HOH . D 4 HOH A 45 445 36 HOH HOH . D 4 HOH A 46 446 66 HOH HOH . D 4 HOH A 47 447 8 HOH HOH . D 4 HOH A 48 448 22 HOH HOH . D 4 HOH A 49 449 29 HOH HOH . D 4 HOH A 50 450 81 HOH HOH . D 4 HOH A 51 451 133 HOH HOH . D 4 HOH A 52 452 16 HOH HOH . D 4 HOH A 53 453 144 HOH HOH . D 4 HOH A 54 454 23 HOH HOH . D 4 HOH A 55 455 58 HOH HOH . D 4 HOH A 56 456 5 HOH HOH . D 4 HOH A 57 457 14 HOH HOH . D 4 HOH A 58 458 18 HOH HOH . D 4 HOH A 59 459 17 HOH HOH . D 4 HOH A 60 460 3 HOH HOH . D 4 HOH A 61 461 63 HOH HOH . D 4 HOH A 62 462 7 HOH HOH . D 4 HOH A 63 463 93 HOH HOH . D 4 HOH A 64 464 4 HOH HOH . D 4 HOH A 65 465 40 HOH HOH . D 4 HOH A 66 466 15 HOH HOH . D 4 HOH A 67 467 19 HOH HOH . D 4 HOH A 68 468 87 HOH HOH . D 4 HOH A 69 469 44 HOH HOH . D 4 HOH A 70 470 69 HOH HOH . D 4 HOH A 71 471 76 HOH HOH . D 4 HOH A 72 472 50 HOH HOH . D 4 HOH A 73 473 73 HOH HOH . D 4 HOH A 74 474 78 HOH HOH . D 4 HOH A 75 475 113 HOH HOH . D 4 HOH A 76 476 80 HOH HOH . D 4 HOH A 77 477 157 HOH HOH . D 4 HOH A 78 478 45 HOH HOH . D 4 HOH A 79 479 70 HOH HOH . D 4 HOH A 80 480 89 HOH HOH . D 4 HOH A 81 481 6 HOH HOH . D 4 HOH A 82 482 65 HOH HOH . D 4 HOH A 83 483 67 HOH HOH . D 4 HOH A 84 484 43 HOH HOH . D 4 HOH A 85 485 84 HOH HOH . D 4 HOH A 86 486 121 HOH HOH . D 4 HOH A 87 487 159 HOH HOH . D 4 HOH A 88 488 34 HOH HOH . D 4 HOH A 89 489 35 HOH HOH . D 4 HOH A 90 490 62 HOH HOH . D 4 HOH A 91 491 143 HOH HOH . D 4 HOH A 92 492 37 HOH HOH . D 4 HOH A 93 493 26 HOH HOH . D 4 HOH A 94 494 33 HOH HOH . D 4 HOH A 95 495 134 HOH HOH . D 4 HOH A 96 496 132 HOH HOH . D 4 HOH A 97 497 30 HOH HOH . D 4 HOH A 98 498 152 HOH HOH . D 4 HOH A 99 499 13 HOH HOH . D 4 HOH A 100 500 27 HOH HOH . D 4 HOH A 101 501 11 HOH HOH . D 4 HOH A 102 502 135 HOH HOH . D 4 HOH A 103 503 107 HOH HOH . D 4 HOH A 104 504 88 HOH HOH . D 4 HOH A 105 505 108 HOH HOH . D 4 HOH A 106 506 90 HOH HOH . D 4 HOH A 107 507 145 HOH HOH . D 4 HOH A 108 508 24 HOH HOH . D 4 HOH A 109 509 160 HOH HOH . D 4 HOH A 110 510 71 HOH HOH . D 4 HOH A 111 511 136 HOH HOH . D 4 HOH A 112 512 77 HOH HOH . D 4 HOH A 113 513 96 HOH HOH . D 4 HOH A 114 514 83 HOH HOH . D 4 HOH A 115 515 167 HOH HOH . D 4 HOH A 116 516 125 HOH HOH . D 4 HOH A 117 517 171 HOH HOH . D 4 HOH A 118 518 111 HOH HOH . D 4 HOH A 119 519 100 HOH HOH . D 4 HOH A 120 520 158 HOH HOH . D 4 HOH A 121 521 99 HOH HOH . D 4 HOH A 122 522 163 HOH HOH . D 4 HOH A 123 523 170 HOH HOH . D 4 HOH A 124 524 74 HOH HOH . D 4 HOH A 125 525 118 HOH HOH . D 4 HOH A 126 526 151 HOH HOH . D 4 HOH A 127 527 104 HOH HOH . D 4 HOH A 128 528 41 HOH HOH . D 4 HOH A 129 529 131 HOH HOH . D 4 HOH A 130 530 137 HOH HOH . D 4 HOH A 131 531 162 HOH HOH . D 4 HOH A 132 532 110 HOH HOH . D 4 HOH A 133 533 101 HOH HOH . D 4 HOH A 134 534 122 HOH HOH . D 4 HOH A 135 535 126 HOH HOH . D 4 HOH A 136 536 130 HOH HOH . D 4 HOH A 137 537 156 HOH HOH . D 4 HOH A 138 538 154 HOH HOH . D 4 HOH A 139 539 109 HOH HOH . D 4 HOH A 140 540 172 HOH HOH . D 4 HOH A 141 541 55 HOH HOH . D 4 HOH A 142 542 147 HOH HOH . D 4 HOH A 143 543 120 HOH HOH . D 4 HOH A 144 544 85 HOH HOH . D 4 HOH A 145 545 59 HOH HOH . D 4 HOH A 146 546 105 HOH HOH . D 4 HOH A 147 547 54 HOH HOH . D 4 HOH A 148 548 103 HOH HOH . D 4 HOH A 149 549 94 HOH HOH . D 4 HOH A 150 550 146 HOH HOH . D 4 HOH A 151 551 149 HOH HOH . D 4 HOH A 152 552 148 HOH HOH . D 4 HOH A 153 553 173 HOH HOH . D 4 HOH A 154 554 138 HOH HOH . D 4 HOH A 155 555 139 HOH HOH . D 4 HOH A 156 556 142 HOH HOH . D 4 HOH A 157 557 169 HOH HOH . D 4 HOH A 158 558 153 HOH HOH . D 4 HOH A 159 559 57 HOH HOH . D 4 HOH A 160 560 51 HOH HOH . D 4 HOH A 161 561 168 HOH HOH . D 4 HOH A 162 562 56 HOH HOH . D 4 HOH A 163 563 155 HOH HOH . D 4 HOH A 164 564 115 HOH HOH . D 4 HOH A 165 565 42 HOH HOH . D 4 HOH A 166 566 116 HOH HOH . D 4 HOH A 167 567 164 HOH HOH . D 4 HOH A 168 568 123 HOH HOH . D 4 HOH A 169 569 165 HOH HOH . D 4 HOH A 170 570 119 HOH HOH . D 4 HOH A 171 571 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -2.863 24.779 30.209 1 36.73 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . B 2 -2.937 23.412 30.725 1 32.97 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . B 2 -2.104 23.262 32.005 1 30.05 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . B 2 -2.385 24.274 33.12 1 39.5 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . B 2 -1.605 23.78 34.685 1 37.89 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . B 2 -4.377 23.021 30.998 1 41.19 ? C SAH 301 A 1 HETATM 7 O O SAH . . . B 2 -5.257 23.89 30.996 1 41.81 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . B 2 -4.677 21.851 31.241 1 35.19 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . B 2 -0.474 25.197 34.731 1 33.04 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . B 2 0.652 25.112 33.708 1 40.32 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . B 2 1.387 26.319 33.786 1 36.56 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . B 2 1.619 23.972 34.019 1 43.31 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . B 2 1.894 23.2 32.862 1 41.45 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . B 2 2.88 24.676 34.469 1 39.66 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . B 2 4.042 24.004 34.067 1 42.61 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . B 2 2.761 26.024 33.772 1 35.33 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . B 2 3.554 27.019 34.503 1 35.58 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . B 2 3.444 27.394 35.811 1 32.24 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . B 2 4.392 28.324 36.075 1 34.99 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . B 2 5.108 28.524 34.95 1 35.4 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . B 2 6.191 29.34 34.644 1 36.61 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . B 2 6.719 30.142 35.574 1 41.51 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . B 2 6.715 29.307 33.368 1 35.3 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . B 2 6.191 28.482 32.413 1 35.2 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . B 2 5.118 27.671 32.72 1 34.13 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . B 2 4.596 27.698 33.962 1 33.94 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 431 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #